Wall clock time and date at job start Wed Apr 1 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99673 * 2 1 4 4 C 1.53003 * 109.46792 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47074 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46977 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00286 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99924 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00094 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.57433 * 325.15711 * 9 8 6 11 11 C 1.53124 * 109.55495 * 85.29912 * 9 8 6 12 12 C 1.53035 * 109.30822 * 177.51870 * 11 9 8 13 13 N 1.46853 * 109.52528 * 300.84363 * 12 11 9 14 14 C 1.46896 * 111.00131 * 185.84074 * 13 12 11 15 15 C 1.50700 * 109.47118 * 169.43194 * 14 13 12 16 16 O 1.21287 * 119.99820 * 353.78113 * 15 14 13 17 17 N 1.34777 * 119.99778 * 173.78397 * 15 14 13 18 18 C 1.37101 * 119.99750 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99855 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99939 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00084 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00026 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47025 * 90.00548 * 22 20 18 24 24 H 1.48501 * 109.47167 * 210.00292 * 22 20 18 25 25 H 1.48494 * 109.47121 * 330.00273 * 22 20 18 26 26 C 1.46848 * 111.19923 * 61.73811 * 13 12 11 27 27 C 1.53041 * 109.52455 * 298.26102 * 26 13 12 28 28 H 1.08995 * 109.50254 * 299.19774 * 27 26 13 29 29 O 1.42900 * 109.50150 * 179.11560 * 27 26 13 30 30 H 1.09009 * 109.47264 * 300.00004 * 1 2 3 31 31 H 1.08999 * 109.47454 * 59.99766 * 1 2 3 32 32 H 1.08998 * 109.47106 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47529 * 60.00464 * 3 2 1 34 34 H 1.09000 * 109.46866 * 299.99199 * 3 2 1 35 35 H 1.08996 * 109.47408 * 59.99417 * 4 3 2 36 36 H 1.09003 * 109.47032 * 299.99812 * 4 3 2 37 37 H 1.09002 * 109.46854 * 60.00075 * 5 4 3 38 38 H 1.08994 * 109.47255 * 299.99624 * 5 4 3 39 39 H 0.96998 * 120.00281 * 0.02562 * 8 6 5 40 40 H 1.08998 * 109.47180 * 57.58317 * 11 9 8 41 41 H 1.08993 * 109.53598 * 297.49791 * 11 9 8 42 42 H 1.08999 * 109.46481 * 180.82426 * 12 11 9 43 43 H 1.09003 * 109.45275 * 60.84636 * 12 11 9 44 44 H 1.08999 * 109.46746 * 289.42746 * 14 13 12 45 45 H 1.08996 * 109.47475 * 49.42801 * 14 13 12 46 46 H 0.97000 * 120.00656 * 359.97438 * 17 15 14 47 47 H 0.97003 * 119.99760 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46333 * 178.24185 * 26 13 12 49 49 H 1.09000 * 109.45679 * 58.27541 * 26 13 12 50 50 H 0.96703 * 113.99663 * 60.08334 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 5.6600 2.4634 -0.0013 7 8 6.1816 1.3685 -0.0004 8 7 6.4239 3.5738 -0.0023 9 6 7.8844 3.4581 -0.0029 10 1 8.1822 2.5894 0.5843 11 6 8.3854 3.2989 -1.4411 12 6 9.9146 3.2408 -1.4407 13 7 10.4525 4.4728 -0.8496 14 6 11.9168 4.5132 -0.9582 15 6 12.4106 5.8870 -0.5841 16 8 11.6172 6.7786 -0.3686 17 7 13.7338 6.1247 -0.4891 18 6 14.1830 7.3743 -0.1483 19 1 13.4765 8.1683 0.0437 20 6 15.5471 7.6193 -0.0498 21 7 15.9777 8.8173 0.2765 22 14 16.7691 6.2458 -0.3812 23 1 17.1266 6.2384 -1.8225 24 1 17.9927 6.4651 0.4312 25 1 16.1594 4.9420 -0.0157 26 6 10.0240 4.6227 0.5470 27 6 8.4979 4.7221 0.6060 28 1 8.1681 5.5946 0.0423 29 8 8.0803 4.8472 1.9668 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8901 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6437 0.8892 37 1 3.8364 3.1236 0.8887 38 1 3.8358 3.1231 -0.8912 39 1 6.0068 4.4495 -0.0027 40 1 8.0537 4.1487 -2.0376 41 1 7.9863 2.3780 -1.8661 42 1 10.2746 3.1421 -2.4648 43 1 10.2452 2.3828 -0.8553 44 1 12.3516 3.7749 -0.2845 45 1 12.2115 4.2878 -1.9831 46 1 14.3684 5.4115 -0.6612 47 1 16.9301 8.9882 0.3455 48 1 10.4634 5.5277 0.9666 49 1 10.3542 3.7581 1.1229 50 1 8.4333 5.6272 2.4164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099704028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:36 Heat of formation + Delta-G solvation = -164.153750 kcal Electronic energy + Delta-G solvation = -30046.356105 eV Core-core repulsion = 25687.705122 eV Total energy + Delta-G solvation = -4358.650983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39824 -39.24750 -38.33636 -37.97235 -36.10063 -34.88974 -33.96877 -33.94145 -31.80208 -31.51539 -29.69472 -28.48336 -27.27629 -26.01633 -24.49985 -23.32054 -22.71689 -21.92549 -20.56395 -19.97507 -19.40441 -18.33250 -17.55143 -17.28269 -16.74659 -16.69680 -16.48985 -16.04277 -15.55017 -15.44806 -15.25407 -15.07696 -14.79288 -14.19516 -14.05861 -13.90292 -13.82480 -13.64843 -13.13935 -13.02774 -12.83670 -12.53523 -12.44887 -12.41509 -12.31901 -12.11395 -11.89552 -11.67982 -11.43192 -11.38994 -11.28966 -11.21545 -11.11466 -10.62784 -10.54821 -10.14239 -10.09578 -10.01900 -9.88143 -9.58188 -9.19053 -8.64402 -8.22455 -8.06829 -6.35211 -3.86827 2.48315 2.85704 2.99876 3.04278 3.12819 3.43483 3.68802 3.69581 4.06049 4.08318 4.40250 4.55169 4.62036 4.68476 4.76326 4.86971 4.87948 4.95167 4.98485 5.00745 5.02144 5.07443 5.10164 5.17921 5.20018 5.22316 5.26565 5.43542 5.53346 5.56599 5.67312 5.73711 5.75257 5.86275 5.86470 5.89200 5.90671 6.09010 6.16327 6.34708 6.73483 7.02005 7.14732 7.34119 7.54193 7.58628 8.07201 8.09649 8.55803 8.90726 9.38182 9.78319 10.77754 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.038160 B = 0.001672 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.579408 B =16739.138591 C =17110.530917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.515 3.485 7 O -0.541 6.541 8 N -0.717 5.717 9 C 0.154 3.846 10 H 0.090 0.910 11 C -0.122 4.122 12 C 0.055 3.945 13 N -0.512 5.512 14 C 0.044 3.956 15 C 0.451 3.549 16 O -0.561 6.561 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.043 3.957 21 N -0.880 5.880 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.270 1.270 26 C 0.027 3.973 27 C 0.105 3.895 28 H 0.072 0.928 29 O -0.566 6.566 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.401 0.599 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.035 0.965 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.105 0.895 49 H 0.035 0.965 50 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.306 -14.097 -1.757 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.301 3.699 7 O -0.418 6.418 8 N -0.368 5.368 9 C 0.049 3.951 10 H 0.108 0.892 11 C -0.161 4.161 12 C -0.074 4.074 13 N -0.238 5.238 14 C -0.088 4.088 15 C 0.237 3.763 16 O -0.443 6.443 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.160 4.160 21 N -0.520 5.520 22 Si 0.705 3.295 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.102 4.102 27 C 0.046 3.954 28 H 0.090 0.910 29 O -0.372 6.372 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.236 0.764 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.123 0.877 49 H 0.053 0.947 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -24.688 -14.452 -1.953 28.673 hybrid contribution 1.486 -0.362 0.324 1.564 sum -23.201 -14.814 -1.629 27.576 Atomic orbital electron populations 1.22749 0.80960 1.02848 0.99966 1.87895 1.19734 1.28009 1.95413 1.22560 0.94112 0.84731 1.00188 1.21216 0.92085 0.95857 1.05047 1.21541 0.92181 0.99396 1.04671 1.20549 0.89379 0.84286 0.75684 1.90716 1.75093 1.26596 1.49412 1.45942 1.06637 1.09032 1.75144 1.21031 0.79211 0.98439 0.96425 0.89165 1.21920 0.95136 1.03141 0.95862 1.22124 0.94434 0.90531 1.00314 1.61447 1.09051 1.35654 1.17620 1.21893 0.87806 0.96786 1.02298 1.19628 0.82760 0.89504 0.84402 1.90527 1.54254 1.45960 1.53564 1.42232 1.05587 1.12016 1.63117 1.19415 0.92837 0.87299 1.43891 0.86265 1.25031 0.96924 0.96616 0.97473 1.69620 1.15361 1.20122 1.46929 0.86683 0.81858 0.81691 0.79224 1.19567 1.20161 1.19533 1.22849 0.95002 1.03090 0.89241 1.21973 0.93276 0.97222 0.82978 0.90969 1.86463 1.74791 1.51040 1.24877 0.94053 0.94050 0.89581 0.93204 0.93223 0.90252 0.90242 0.88631 0.88675 0.76444 0.90412 0.90361 0.89965 0.94633 0.93291 0.88802 0.79692 0.91580 0.87692 0.94692 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.54 10.70 -35.23 -0.38 -3.92 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.10 -0.86 4.87 -26.73 -0.13 -1.00 16 5 C -0.14 -0.94 5.70 -27.88 -0.16 -1.10 16 6 C 0.51 5.51 7.80 -10.99 -0.09 5.43 16 7 O -0.54 -8.00 15.65 5.55 0.09 -7.91 16 8 N -0.72 -7.07 4.99 -53.68 -0.27 -7.34 16 9 C 0.15 1.83 2.20 -67.80 -0.15 1.68 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 11 C -0.12 -1.37 5.67 -26.65 -0.15 -1.52 16 12 C 0.05 0.66 5.46 -3.83 -0.02 0.64 16 13 N -0.51 -7.70 4.35 -236.11 -1.03 -8.73 16 14 C 0.04 0.70 5.45 -4.98 -0.03 0.67 16 15 C 0.45 9.80 7.31 -10.99 -0.08 9.72 16 16 O -0.56 -14.16 14.28 5.55 0.08 -14.08 16 17 N -0.59 -13.62 5.09 -10.97 -0.06 -13.68 16 18 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 19 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.28 13.96 55.50 0.77 -24.50 16 22 Si 0.88 19.04 27.74 -169.99 -4.71 14.32 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 26 C 0.03 0.40 4.74 -3.83 -0.02 0.38 16 27 C 0.11 1.31 3.14 -26.65 -0.08 1.23 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 O -0.57 -6.77 13.23 -35.23 -0.47 -7.23 16 30 H 0.04 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.40 3.02 8.61 -40.82 -0.35 2.67 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.09 1.31 7.98 -51.93 -0.41 0.90 16 46 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.10 1.85 6.05 -51.93 -0.31 1.54 16 49 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.38 3.51 9.08 45.56 0.41 3.92 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -35.31 406.46 -7.26 -42.58 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -7.60 Total: 13.83 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 0.18 Total: 10.54 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.58 Total: -54.24 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.68 Total: -33.15 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.31 -7.26 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.576 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds