Wall clock time and date at job start Wed Apr 1 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99673 * 2 1 4 4 C 1.53003 * 109.46792 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47074 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46977 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00286 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99924 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00094 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.57433 * 325.15711 * 9 8 6 11 11 C 1.53124 * 109.55495 * 85.29912 * 9 8 6 12 12 C 1.53035 * 109.30822 * 177.51870 * 11 9 8 13 13 N 1.46853 * 109.52528 * 300.84363 * 12 11 9 14 14 C 1.46896 * 111.00131 * 185.84074 * 13 12 11 15 15 C 1.50700 * 109.47118 * 169.43194 * 14 13 12 16 16 O 1.21287 * 119.99820 * 353.78113 * 15 14 13 17 17 N 1.34777 * 119.99778 * 173.78397 * 15 14 13 18 18 C 1.37101 * 119.99750 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99855 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99939 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00084 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00026 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47025 * 90.00548 * 22 20 18 24 24 H 1.48501 * 109.47167 * 210.00292 * 22 20 18 25 25 H 1.48494 * 109.47121 * 330.00273 * 22 20 18 26 26 C 1.46848 * 111.19923 * 61.73811 * 13 12 11 27 27 C 1.53041 * 109.52455 * 298.26102 * 26 13 12 28 28 H 1.08995 * 109.50254 * 299.19774 * 27 26 13 29 29 O 1.42900 * 109.50150 * 179.11560 * 27 26 13 30 30 H 1.09009 * 109.47264 * 300.00004 * 1 2 3 31 31 H 1.08999 * 109.47454 * 59.99766 * 1 2 3 32 32 H 1.08998 * 109.47106 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47529 * 60.00464 * 3 2 1 34 34 H 1.09000 * 109.46866 * 299.99199 * 3 2 1 35 35 H 1.08996 * 109.47408 * 59.99417 * 4 3 2 36 36 H 1.09003 * 109.47032 * 299.99812 * 4 3 2 37 37 H 1.09002 * 109.46854 * 60.00075 * 5 4 3 38 38 H 1.08994 * 109.47255 * 299.99624 * 5 4 3 39 39 H 0.96998 * 120.00281 * 0.02562 * 8 6 5 40 40 H 1.08998 * 109.47180 * 57.58317 * 11 9 8 41 41 H 1.08993 * 109.53598 * 297.49791 * 11 9 8 42 42 H 1.08999 * 109.46481 * 180.82426 * 12 11 9 43 43 H 1.09003 * 109.45275 * 60.84636 * 12 11 9 44 44 H 1.08999 * 109.46746 * 289.42746 * 14 13 12 45 45 H 1.08996 * 109.47475 * 49.42801 * 14 13 12 46 46 H 0.97000 * 120.00656 * 359.97438 * 17 15 14 47 47 H 0.97003 * 119.99760 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46333 * 178.24185 * 26 13 12 49 49 H 1.09000 * 109.45679 * 58.27541 * 26 13 12 50 50 H 0.96703 * 113.99663 * 60.08334 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 5.6600 2.4634 -0.0013 7 8 6.1816 1.3685 -0.0004 8 7 6.4239 3.5738 -0.0023 9 6 7.8844 3.4581 -0.0029 10 1 8.1822 2.5894 0.5843 11 6 8.3854 3.2989 -1.4411 12 6 9.9146 3.2408 -1.4407 13 7 10.4525 4.4728 -0.8496 14 6 11.9168 4.5132 -0.9582 15 6 12.4106 5.8870 -0.5841 16 8 11.6172 6.7786 -0.3686 17 7 13.7338 6.1247 -0.4891 18 6 14.1830 7.3743 -0.1483 19 1 13.4765 8.1683 0.0437 20 6 15.5471 7.6193 -0.0498 21 7 15.9777 8.8173 0.2765 22 14 16.7691 6.2458 -0.3812 23 1 17.1266 6.2384 -1.8225 24 1 17.9927 6.4651 0.4312 25 1 16.1594 4.9420 -0.0157 26 6 10.0240 4.6227 0.5470 27 6 8.4979 4.7221 0.6060 28 1 8.1681 5.5946 0.0423 29 8 8.0803 4.8472 1.9668 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8901 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6437 0.8892 37 1 3.8364 3.1236 0.8887 38 1 3.8358 3.1231 -0.8912 39 1 6.0068 4.4495 -0.0027 40 1 8.0537 4.1487 -2.0376 41 1 7.9863 2.3780 -1.8661 42 1 10.2746 3.1421 -2.4648 43 1 10.2452 2.3828 -0.8553 44 1 12.3516 3.7749 -0.2845 45 1 12.2115 4.2878 -1.9831 46 1 14.3684 5.4115 -0.6612 47 1 16.9301 8.9882 0.3455 48 1 10.4634 5.5277 0.9666 49 1 10.3542 3.7581 1.1229 50 1 8.4333 5.6272 2.4164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099704028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:36 Heat of formation + Delta-G solvation = -196.351668 kcal Electronic energy + Delta-G solvation = -30047.752312 eV Core-core repulsion = 25687.705122 eV Total energy + Delta-G solvation = -4360.047190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37575 -40.51549 -39.48156 -38.80982 -37.20777 -36.06294 -35.67577 -34.62536 -33.74452 -32.62003 -30.74621 -29.33153 -28.35750 -26.75644 -26.01639 -24.43627 -23.71380 -22.68815 -21.44562 -21.25653 -20.90422 -20.20186 -18.40594 -18.21326 -17.77562 -17.53992 -17.29077 -17.12661 -16.83844 -16.57730 -16.24338 -16.12209 -15.77087 -15.50446 -15.33367 -15.08142 -14.81791 -14.70224 -14.60318 -14.23287 -14.08039 -13.88490 -13.74351 -13.27266 -13.04426 -12.99857 -12.97839 -12.72681 -12.60839 -12.41943 -12.34988 -12.19923 -11.98068 -11.96433 -11.87596 -11.62398 -11.43852 -11.13494 -10.83192 -10.59751 -10.36849 -10.22264 -10.08270 -9.30469 -8.40376 -6.00599 1.30790 1.35575 1.44185 1.66866 1.96775 2.09888 2.23197 2.50846 2.90840 2.98724 3.16290 3.26071 3.67859 3.76309 3.90653 3.96494 4.01329 4.10048 4.17253 4.17826 4.23120 4.30811 4.37629 4.46996 4.49046 4.50355 4.53221 4.57174 4.59746 4.64196 4.73059 4.77275 4.79790 4.87520 4.89792 4.95281 5.13210 5.19349 5.25574 5.47606 5.53472 5.84095 5.97276 6.08172 6.26919 6.57377 6.60882 6.70206 6.89678 7.28128 7.41478 7.97662 8.77026 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.038160 B = 0.001672 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.579408 B =16739.138591 C =17110.530917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.127 4.127 6 C 0.510 3.490 7 O -0.587 6.587 8 N -0.709 5.709 9 C 0.159 3.841 10 H 0.066 0.934 11 C -0.113 4.113 12 C 0.056 3.944 13 N -0.526 5.526 14 C 0.053 3.947 15 C 0.453 3.547 16 O -0.602 6.602 17 N -0.593 5.593 18 C -0.325 4.325 19 H 0.058 0.942 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.961 3.039 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.233 1.233 26 C 0.030 3.970 27 C 0.116 3.884 28 H 0.072 0.928 29 O -0.572 6.572 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.415 0.585 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.126 0.874 46 H 0.388 0.612 47 H 0.278 0.722 48 H 0.071 0.929 49 H 0.035 0.965 50 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.123 -16.265 -2.970 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.166 4.166 6 C 0.298 3.702 7 O -0.468 6.468 8 N -0.359 5.359 9 C 0.053 3.947 10 H 0.084 0.916 11 C -0.152 4.152 12 C -0.072 4.072 13 N -0.253 5.253 14 C -0.078 4.078 15 C 0.241 3.759 16 O -0.486 6.486 17 N -0.235 5.235 18 C -0.454 4.454 19 H 0.076 0.924 20 C -0.212 4.212 21 N -0.575 5.575 22 Si 0.781 3.219 23 H -0.182 1.182 24 H -0.202 1.202 25 H -0.157 1.157 26 C -0.099 4.099 27 C 0.056 3.944 28 H 0.090 0.910 29 O -0.379 6.379 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.251 0.749 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.144 0.856 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.054 0.946 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -25.548 -16.610 -3.167 30.637 hybrid contribution 1.599 0.394 0.749 1.809 sum -23.950 -16.215 -2.418 29.024 Atomic orbital electron populations 1.22917 0.79384 1.03678 1.01052 1.87848 1.21617 1.29394 1.95675 1.22613 0.92725 0.84343 1.01801 1.21149 0.93549 0.96369 1.02878 1.21543 0.88844 0.98966 1.07258 1.21258 0.90980 0.83513 0.74426 1.90699 1.76187 1.28321 1.51562 1.45861 1.05799 1.09741 1.74546 1.20850 0.80508 0.96848 0.96504 0.91568 1.21850 0.94704 1.03426 0.95250 1.22211 0.94701 0.89127 1.01140 1.61424 1.08530 1.37713 1.17605 1.21851 0.88608 0.92803 1.04556 1.20794 0.81890 0.91426 0.81835 1.90513 1.55313 1.48206 1.54532 1.42066 1.06624 1.10865 1.63958 1.18999 0.92562 0.88154 1.45731 0.92351 1.26045 0.98857 0.99871 0.96378 1.69799 1.16216 1.23168 1.48322 0.85417 0.78019 0.78857 0.79566 1.18151 1.20223 1.15688 1.22739 0.96449 1.01301 0.89365 1.21825 0.91768 0.97508 0.83280 0.91032 1.86440 1.74805 1.51917 1.24775 0.93000 0.92858 0.89049 0.91659 0.91355 0.92233 0.92719 0.86231 0.85584 0.74861 0.89912 0.90071 0.87991 0.94089 0.90798 0.85588 0.77635 0.91226 0.91109 0.94647 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.31 10.70 -148.98 -1.59 -8.91 16 3 C 0.06 0.74 5.94 71.98 0.43 1.16 16 4 C -0.10 -1.60 4.87 30.60 0.15 -1.45 16 5 C -0.13 -1.43 5.70 29.85 0.17 -1.26 16 6 C 0.51 10.30 7.80 87.66 0.68 10.98 16 7 O -0.59 -17.37 15.65 -3.04 -0.05 -17.42 16 8 N -0.71 -12.84 4.99 -442.13 -2.21 -15.05 16 9 C 0.16 3.60 2.20 45.07 0.10 3.70 16 10 H 0.07 1.86 7.58 -2.39 -0.02 1.85 16 11 C -0.11 -2.33 5.67 30.65 0.17 -2.15 16 12 C 0.06 1.20 5.46 86.32 0.47 1.67 16 13 N -0.53 -14.92 4.35 -900.92 -3.92 -18.84 16 14 C 0.05 1.56 5.45 85.56 0.47 2.03 16 15 C 0.45 19.55 7.31 87.66 0.64 20.19 16 16 O -0.60 -31.39 14.28 -3.05 -0.04 -31.44 16 17 N -0.59 -27.14 5.09 -306.99 -1.56 -28.70 16 18 C -0.33 -18.58 10.16 84.04 0.85 -17.73 16 19 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 20 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 21 N -0.93 -55.56 13.96 21.66 0.30 -55.25 16 22 Si 0.96 38.27 27.74 68.60 1.90 40.17 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 26 C 0.03 0.89 4.74 86.33 0.41 1.30 16 27 C 0.12 2.82 3.14 30.65 0.10 2.92 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 O -0.57 -13.37 13.23 -148.98 -1.97 -15.34 16 30 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.41 5.31 8.61 -92.71 -0.80 4.51 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.10 1.82 8.01 -2.39 -0.02 1.80 16 43 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 45 H 0.13 2.99 7.98 -2.39 -0.02 2.97 16 46 H 0.39 14.79 5.76 -92.71 -0.53 14.26 16 47 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 48 H 0.07 2.57 6.05 -2.39 -0.01 2.55 16 49 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.39 7.19 9.08 -74.06 -0.67 6.52 16 Total: -1.00 -83.08 406.46 -3.88 -86.96 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -1.10 Total: 41.21 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 6.36 Total: 22.62 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -7.38 Total: -117.85 kcal Atomic # 8 Polarization: -69.45 SS G_CDS: -3.66 Total: -73.10 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -83.08 -3.88 -86.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.396 kcal (2) G-P(sol) polarization free energy of solvation -83.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds