Wall clock time and date at job start Wed Apr 1 2020 02:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47148 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47025 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99860 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99452 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99229 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.52829 * 35.13086 * 9 8 6 11 11 C 1.53119 * 109.52097 * 275.00116 * 9 8 6 12 12 C 1.53039 * 109.27548 * 182.44396 * 11 9 8 13 13 N 1.46848 * 109.52253 * 59.18091 * 12 11 9 14 14 C 1.46904 * 111.00219 * 174.15775 * 13 12 11 15 15 C 1.50703 * 109.46613 * 66.04618 * 14 13 12 16 16 O 1.21285 * 120.00473 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99426 * 180.02562 * 15 14 13 18 18 C 1.37106 * 119.99453 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99968 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99436 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00668 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99519 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47042 * 90.00336 * 22 20 18 24 24 H 1.48502 * 109.46787 * 210.00072 * 22 20 18 25 25 H 1.48497 * 109.47256 * 329.99968 * 22 20 18 26 26 C 1.46846 * 111.20007 * 298.25782 * 13 12 11 27 27 C 1.53034 * 109.52250 * 61.74142 * 26 13 12 28 28 H 1.08998 * 109.50239 * 60.76387 * 27 26 13 29 29 O 1.42906 * 109.50205 * 180.88241 * 27 26 13 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 33 33 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 34 34 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 35 35 H 1.09004 * 109.46775 * 299.99875 * 4 3 2 36 36 H 1.09003 * 109.47385 * 59.99763 * 4 3 2 37 37 H 1.09000 * 109.46622 * 300.00120 * 5 4 3 38 38 H 1.08999 * 109.46719 * 59.99657 * 5 4 3 39 39 H 0.96991 * 120.00413 * 0.02562 * 8 6 5 40 40 H 1.08995 * 109.50507 * 302.38324 * 11 9 8 41 41 H 1.09000 * 109.50593 * 62.51031 * 11 9 8 42 42 H 1.09002 * 109.46429 * 179.19290 * 12 11 9 43 43 H 1.08998 * 109.46609 * 299.17530 * 12 11 9 44 44 H 1.08993 * 109.47218 * 186.04485 * 14 13 12 45 45 H 1.09002 * 109.47159 * 306.05251 * 14 13 12 46 46 H 0.97001 * 120.00663 * 359.97438 * 17 15 14 47 47 H 0.97001 * 120.00348 * 180.02562 * 21 20 18 48 48 H 1.09006 * 109.46391 * 181.75982 * 26 13 12 49 49 H 1.09002 * 109.46151 * 301.73621 * 26 13 12 50 50 H 0.96696 * 113.99942 * 299.79781 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5823 0.0000 6 6 5.6602 2.4632 0.0000 7 8 6.1816 1.3682 -0.0009 8 7 6.4241 3.5736 0.0000 9 6 7.8846 3.4578 -0.0006 10 1 8.1811 2.5916 -0.5920 11 6 8.3852 3.2915 1.4369 12 6 9.9144 3.2323 1.4356 13 7 10.4528 4.4669 0.8504 14 6 11.9174 4.5058 0.9587 15 6 12.5131 3.4153 0.1060 16 8 11.7891 2.6786 -0.5297 17 7 13.8506 3.2588 0.0498 18 6 14.3926 2.2663 -0.7255 19 1 13.7478 1.6104 -1.2915 20 6 15.7715 2.1053 -0.7838 21 7 16.5561 2.9037 -0.0955 22 14 16.5100 0.7536 -1.8408 23 1 16.7627 1.2763 -3.2076 24 1 17.7899 0.2992 -1.2402 25 1 15.5646 -0.3892 -1.9148 26 6 10.0239 4.6241 -0.5452 27 6 8.4980 4.7248 -0.6030 28 1 8.1689 5.5944 -0.0342 29 8 8.0798 4.8571 -1.9631 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 3.8574 0.6435 0.8892 36 1 3.8568 0.6437 -0.8908 37 1 3.8359 3.1237 -0.8895 38 1 3.8365 3.1226 0.8904 39 1 6.0070 4.4492 0.0004 40 1 8.0543 4.1386 2.0377 41 1 7.9857 2.3684 1.8569 42 1 10.2748 3.1284 2.4591 43 1 10.2443 2.3771 0.8458 44 1 12.2814 5.4744 0.6164 45 1 12.2090 4.3545 1.9980 46 1 14.4297 3.8481 0.5579 47 1 17.5187 2.7915 -0.1366 48 1 10.4638 5.5309 -0.9604 49 1 10.3531 3.7621 -1.1256 50 1 8.4317 5.6400 -2.4084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099704029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:40 Heat of formation + Delta-G solvation = -169.077626 kcal Electronic energy + Delta-G solvation = -30455.767566 eV Core-core repulsion = 26096.903067 eV Total energy + Delta-G solvation = -4358.864499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.28613 -39.27890 -38.25934 -37.74677 -35.83789 -34.75213 -33.86295 -33.83659 -31.58858 -31.17941 -29.49999 -28.35714 -27.01650 -25.90354 -24.54908 -23.15241 -22.63053 -21.81611 -20.40917 -19.90099 -19.26670 -17.94677 -17.40804 -17.22441 -16.66486 -16.54541 -16.34599 -16.04811 -15.47588 -15.21065 -15.10428 -14.89548 -14.61802 -14.09348 -13.90231 -13.85844 -13.76732 -13.51225 -13.38847 -12.84002 -12.64562 -12.36169 -12.26886 -12.16479 -12.02757 -11.91853 -11.52706 -11.34901 -11.23655 -11.20254 -11.18838 -10.94967 -10.73156 -10.44857 -10.39482 -10.27298 -10.02914 -10.02720 -9.72549 -9.48889 -9.27840 -9.01747 -8.03238 -7.48976 -6.48387 -3.89708 2.63746 2.98694 3.13200 3.23365 3.29641 3.52481 3.78097 3.97671 4.13053 4.34971 4.52942 4.63774 4.75663 4.83008 4.93722 4.94560 4.95502 5.05858 5.07007 5.13312 5.15857 5.17924 5.24318 5.26641 5.33709 5.39483 5.46863 5.65072 5.74960 5.83544 5.88282 5.97079 6.01549 6.08314 6.10301 6.17683 6.20759 6.48672 6.54756 6.68650 6.80817 7.21895 7.29360 7.48692 7.49015 7.65682 7.98108 8.23621 8.52277 9.10213 9.45425 9.95865 10.67983 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.001947 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.867526 B =14380.746326 C =15250.459224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.062 3.938 4 C -0.105 4.105 5 C -0.136 4.136 6 C 0.512 3.488 7 O -0.535 6.535 8 N -0.719 5.719 9 C 0.155 3.845 10 H 0.096 0.904 11 C -0.117 4.117 12 C 0.041 3.959 13 N -0.511 5.511 14 C 0.042 3.958 15 C 0.403 3.597 16 O -0.592 6.592 17 N -0.554 5.554 18 C -0.303 4.303 19 H 0.103 0.897 20 C 0.025 3.975 21 N -0.898 5.898 22 Si 0.930 3.070 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.003 3.997 27 C 0.107 3.893 28 H 0.060 0.940 29 O -0.563 6.563 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.398 0.602 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.068 0.932 49 H 0.098 0.902 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.129 7.242 3.130 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.143 4.143 5 C -0.177 4.177 6 C 0.298 3.702 7 O -0.412 6.412 8 N -0.369 5.369 9 C 0.050 3.950 10 H 0.114 0.886 11 C -0.156 4.156 12 C -0.088 4.088 13 N -0.235 5.235 14 C -0.090 4.090 15 C 0.189 3.811 16 O -0.479 6.479 17 N -0.189 5.189 18 C -0.433 4.433 19 H 0.121 0.879 20 C -0.177 4.177 21 N -0.538 5.538 22 Si 0.756 3.244 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.194 1.194 26 C -0.125 4.125 27 C 0.047 3.953 28 H 0.078 0.922 29 O -0.367 6.367 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.226 0.774 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.116 0.884 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -25.418 5.628 3.125 26.220 hybrid contribution 1.183 0.431 -0.738 1.459 sum -24.235 6.058 2.387 25.094 Atomic orbital electron populations 1.22746 0.81039 1.02834 0.99890 1.87907 1.19662 1.28019 1.95393 1.22556 0.94176 0.84705 1.00069 1.21227 0.91984 0.95933 1.05185 1.21532 0.92358 0.99324 1.04437 1.20538 0.89294 0.84421 0.75995 1.90751 1.75000 1.26527 1.48881 1.45963 1.06858 1.08743 1.75380 1.21018 0.78551 0.98645 0.96754 0.88592 1.21880 0.95945 1.02402 0.95367 1.22234 0.93201 0.93218 1.00127 1.62437 1.07947 1.35999 1.17112 1.22035 0.87731 0.98610 1.00609 1.21072 0.83449 0.88913 0.87683 1.90413 1.59280 1.48828 1.49364 1.42051 1.05178 1.30244 1.41467 1.19733 0.90566 1.09777 1.23200 0.87908 1.25286 0.96112 0.98526 0.97807 1.69606 1.04987 1.38175 1.41076 0.85864 0.78339 0.80697 0.79461 1.20344 1.20832 1.19365 1.23071 0.93729 1.04247 0.91482 1.21977 0.94045 0.96730 0.82537 0.92234 1.86542 1.74558 1.50340 1.25280 0.89590 0.94095 0.94102 0.93273 0.93290 0.90198 0.90160 0.88769 0.88847 0.76874 0.91400 0.90675 0.90991 0.90858 0.89232 0.89128 0.77371 0.91743 0.91313 0.88427 0.77549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.91 10.70 -35.23 -0.38 -4.28 16 3 C 0.06 0.48 5.94 37.16 0.22 0.70 16 4 C -0.11 -1.01 4.87 -26.73 -0.13 -1.14 16 5 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 6 C 0.51 6.39 7.80 -10.98 -0.09 6.30 16 7 O -0.54 -9.29 15.65 5.56 0.09 -9.20 16 8 N -0.72 -8.10 5.00 -53.68 -0.27 -8.37 16 9 C 0.15 2.20 2.20 -67.80 -0.15 2.05 16 10 H 0.10 1.78 7.58 -51.93 -0.39 1.39 16 11 C -0.12 -1.61 5.67 -26.65 -0.15 -1.76 16 12 C 0.04 0.66 5.10 -3.83 -0.02 0.64 16 13 N -0.51 -8.02 4.86 -236.11 -1.15 -9.16 16 14 C 0.04 0.71 5.86 -4.97 -0.03 0.68 16 15 C 0.40 9.03 7.20 -10.98 -0.08 8.95 16 16 O -0.59 -15.02 11.20 5.55 0.06 -14.96 16 17 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 22 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.00 0.05 4.60 -3.84 -0.02 0.03 16 27 C 0.11 1.38 3.14 -26.65 -0.08 1.30 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 O -0.56 -7.05 13.23 -35.23 -0.47 -7.52 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 3.24 8.60 -40.82 -0.35 2.89 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 43 H 0.07 1.48 6.00 -51.93 -0.31 1.17 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 46 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 49 H 0.10 1.99 5.36 -51.93 -0.28 1.71 16 50 H 0.38 3.18 9.08 45.56 0.41 3.59 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -34.33 404.11 -7.69 -42.02 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -7.50 Total: 16.53 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 0.19 Total: 9.92 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.75 Total: -54.57 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.69 Total: -35.96 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.33 -7.69 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.056 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds