Wall clock time and date at job start Wed Apr 1 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47597 * 2 1 4 4 O 1.42902 * 109.46909 * 120.00435 * 2 1 3 5 5 C 1.42901 * 114.00346 * 89.99965 * 4 2 1 6 6 C 1.50695 * 109.47075 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00511 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99417 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99522 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.57556 * 325.15540 * 9 8 6 11 11 C 1.53117 * 109.52511 * 85.31269 * 9 8 6 12 12 C 1.53040 * 109.28027 * 177.55696 * 11 9 8 13 13 N 1.46847 * 109.52342 * 300.82813 * 12 11 9 14 14 C 1.46903 * 111.00060 * 185.84030 * 13 12 11 15 15 C 1.50698 * 109.47200 * 169.43290 * 14 13 12 16 16 O 1.21296 * 120.00182 * 353.77483 * 15 14 13 17 17 N 1.34779 * 120.00093 * 173.78279 * 15 14 13 18 18 C 1.37094 * 120.00067 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00100 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99765 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99789 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00308 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47364 * 89.99746 * 22 20 18 24 24 H 1.48503 * 109.47188 * 210.00104 * 22 20 18 25 25 H 1.48498 * 109.46992 * 329.99637 * 22 20 18 26 26 C 1.46839 * 111.20224 * 61.73655 * 13 12 11 27 27 C 1.53036 * 109.52667 * 298.25992 * 26 13 12 28 28 H 1.09005 * 109.50539 * 299.23817 * 27 26 13 29 29 O 1.42899 * 109.53731 * 179.13792 * 27 26 13 30 30 H 1.09003 * 109.47115 * 299.99894 * 1 2 3 31 31 H 1.09000 * 109.47176 * 59.99609 * 1 2 3 32 32 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47115 * 240.00106 * 2 1 3 34 34 H 1.08996 * 109.47453 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47177 * 300.00391 * 3 2 1 36 36 H 1.09003 * 109.46801 * 59.99914 * 3 2 1 37 37 H 1.08999 * 109.46961 * 59.99402 * 5 4 2 38 38 H 1.09001 * 109.46979 * 299.99904 * 5 4 2 39 39 H 0.96994 * 120.00274 * 359.97438 * 8 6 5 40 40 H 1.08990 * 109.50655 * 297.50107 * 11 9 8 41 41 H 1.09004 * 109.50166 * 57.61889 * 11 9 8 42 42 H 1.08991 * 109.46465 * 180.80578 * 12 11 9 43 43 H 1.09003 * 109.46316 * 60.83442 * 12 11 9 44 44 H 1.09003 * 109.46706 * 289.42822 * 14 13 12 45 45 H 1.08994 * 109.47133 * 49.42546 * 14 13 12 46 46 H 0.97004 * 119.99555 * 359.97438 * 17 15 14 47 47 H 0.97001 * 119.99873 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.46768 * 178.24174 * 26 13 12 49 49 H 1.09004 * 109.46312 * 58.27946 * 26 13 12 50 50 H 0.96700 * 114.00179 * 60.18290 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0783 0.9886 6 6 2.7013 -2.6833 2.2745 7 8 2.8760 -1.9809 3.2476 8 7 2.9555 -4.0052 2.3431 9 6 3.4423 -4.5935 3.5933 10 1 4.0951 -3.8834 4.1013 11 6 2.2533 -4.9320 4.4966 12 6 2.7640 -5.6016 5.7745 13 7 3.5015 -6.8231 5.4274 14 6 3.8879 -7.5658 6.6346 15 6 4.4063 -8.9256 6.2434 16 8 4.3452 -9.2886 5.0876 17 7 4.9377 -9.7387 7.1778 18 6 5.4088 -10.9760 6.8220 19 1 5.3538 -11.2994 5.7930 20 6 5.9571 -11.8139 7.7852 21 7 6.4083 -13.0002 7.4443 22 14 6.0517 -11.2549 9.5650 23 1 4.8124 -11.6578 10.2770 24 1 7.2261 -11.8850 10.2201 25 1 6.1920 -9.7773 9.6130 26 6 4.6750 -6.5177 4.5993 27 6 4.2214 -5.8755 3.2863 28 1 3.5798 -6.5701 2.7440 29 8 5.3643 -5.5598 2.4888 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.9318 -2.2468 0.1986 38 1 1.2537 -2.5434 0.7124 39 1 2.8155 -4.5670 1.5649 40 1 1.7194 -4.0173 4.7536 41 1 1.5807 -5.6118 3.9734 42 1 1.9187 -5.8569 6.4135 43 1 3.4256 -4.9162 6.3042 44 1 4.6677 -7.0182 7.1639 45 1 3.0200 -7.6807 7.2838 46 1 4.9868 -9.4483 8.1020 47 1 6.7914 -13.5850 8.1166 48 1 5.2178 -7.4383 4.3847 49 1 5.3277 -5.8279 5.1345 50 1 5.9054 -6.3267 2.2560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099724795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:36 Heat of formation + Delta-G solvation = -157.949632 kcal Electronic energy + Delta-G solvation = -30387.790447 eV Core-core repulsion = 26029.408494 eV Total energy + Delta-G solvation = -4358.381953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.41001 -39.35502 -38.42646 -37.81814 -36.10166 -34.83366 -33.95030 -33.17755 -31.84399 -31.58386 -29.71240 -28.50240 -27.62584 -26.84710 -24.47734 -23.28476 -22.50074 -21.72987 -20.74029 -20.11374 -19.40200 -18.33177 -17.54981 -17.43801 -17.24889 -16.45175 -16.23791 -15.93572 -15.46066 -15.28033 -15.02493 -14.75668 -14.56788 -14.12461 -13.99046 -13.81276 -13.65535 -13.32670 -13.16661 -13.06328 -12.93343 -12.67423 -12.58914 -12.50408 -12.36295 -12.32222 -11.89535 -11.84830 -11.68075 -11.39484 -11.22661 -11.14166 -11.11472 -10.62562 -10.54327 -10.12723 -10.05452 -10.01662 -9.83807 -9.57981 -9.21373 -8.64166 -8.22256 -8.06607 -6.35054 -3.86597 2.44067 2.53384 3.00064 3.04459 3.12979 3.61854 3.69016 3.69596 4.06004 4.08183 4.37383 4.54177 4.57494 4.65886 4.72789 4.75978 4.77087 4.86063 4.96337 5.00400 5.09677 5.17713 5.18045 5.22232 5.28177 5.37211 5.41758 5.42466 5.53421 5.56697 5.67473 5.74987 5.75998 5.80164 5.86159 5.86435 5.89584 6.07933 6.16206 6.30967 6.73304 7.02130 7.14843 7.31772 7.54353 7.58618 8.05567 8.09840 8.55961 8.90909 9.38361 9.78543 10.77898 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.034739 B = 0.001790 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.809318 B =15639.520744 C =15935.763216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.045 3.955 6 C 0.515 3.485 7 O -0.521 6.521 8 N -0.716 5.716 9 C 0.156 3.844 10 H 0.091 0.909 11 C -0.122 4.122 12 C 0.055 3.945 13 N -0.512 5.512 14 C 0.044 3.956 15 C 0.451 3.549 16 O -0.561 6.561 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.880 5.880 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.270 1.270 26 C 0.027 3.973 27 C 0.106 3.894 28 H 0.073 0.927 29 O -0.566 6.566 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.401 0.599 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.105 0.895 49 H 0.035 0.965 50 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 23.119 -12.111 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.300 3.700 7 O -0.396 6.396 8 N -0.368 5.368 9 C 0.052 3.948 10 H 0.109 0.891 11 C -0.161 4.161 12 C -0.074 4.074 13 N -0.238 5.238 14 C -0.088 4.088 15 C 0.237 3.763 16 O -0.443 6.443 17 N -0.229 5.229 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.520 5.520 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.102 4.102 27 C 0.046 3.954 28 H 0.091 0.909 29 O -0.372 6.372 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.236 0.764 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.123 0.877 49 H 0.053 0.947 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.060 23.607 -12.179 28.405 hybrid contribution 0.772 -0.354 1.357 1.601 sum -9.288 23.253 -10.822 27.278 Atomic orbital electron populations 1.22317 0.95800 1.02446 1.02823 1.22179 0.93805 0.94077 0.87861 1.21853 1.01997 0.94216 1.02633 1.88072 1.86592 1.17699 1.35225 1.22226 1.01175 0.84185 0.95973 1.20211 0.77964 0.82145 0.89686 1.90729 1.50731 1.60503 1.37640 1.45800 1.67969 1.08020 1.15020 1.21042 0.94886 0.94135 0.84767 0.89062 1.21932 0.97505 1.00915 0.95777 1.22122 0.98314 0.90382 0.96576 1.61445 1.23816 1.20396 1.18124 1.21893 1.00588 0.94468 0.91822 1.19633 0.83822 0.86313 0.86543 1.90529 1.59446 1.75592 1.18744 1.42230 1.55623 1.16345 1.08738 1.19413 1.36120 0.89370 0.98523 0.86266 1.25036 0.97140 0.95480 0.98431 1.69620 1.39851 1.08007 1.34542 0.86678 0.78934 0.78744 0.85070 1.19578 1.20169 1.19527 1.22846 0.92271 1.01435 0.93625 1.21972 0.87222 0.94548 0.91692 0.90902 1.86464 1.40242 1.38434 1.72022 0.91543 0.91502 0.92463 0.92025 0.91843 0.91130 0.91580 0.90245 0.90374 0.76448 0.90305 0.90339 0.89926 0.94595 0.93277 0.88794 0.79694 0.91584 0.87655 0.94652 0.76753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.53 37.16 0.35 -0.70 16 2 C 0.08 0.56 3.34 -26.73 -0.09 0.47 16 3 C -0.15 -0.96 9.56 37.16 0.36 -0.60 16 4 O -0.36 -3.82 9.52 -55.14 -0.52 -4.35 16 5 C 0.04 0.38 6.23 36.00 0.22 0.60 16 6 C 0.51 6.11 7.88 -10.98 -0.09 6.02 16 7 O -0.52 -8.55 16.16 -14.35 -0.23 -8.78 16 8 N -0.72 -7.31 4.99 -53.68 -0.27 -7.57 16 9 C 0.16 1.89 2.20 -67.81 -0.15 1.74 16 10 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 11 C -0.12 -1.39 5.67 -26.65 -0.15 -1.54 16 12 C 0.05 0.66 5.46 -3.83 -0.02 0.64 16 13 N -0.51 -7.70 4.35 -236.12 -1.03 -8.73 16 14 C 0.04 0.70 5.45 -4.98 -0.03 0.67 16 15 C 0.45 9.79 7.31 -10.99 -0.08 9.71 16 16 O -0.56 -14.14 14.28 5.54 0.08 -14.07 16 17 N -0.59 -13.61 5.09 -10.96 -0.06 -13.67 16 18 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 19 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.28 13.96 55.50 0.77 -24.50 16 22 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 26 C 0.03 0.40 4.74 -3.84 -0.02 0.38 16 27 C 0.11 1.31 3.14 -26.65 -0.08 1.23 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 O -0.57 -6.76 13.23 -35.23 -0.47 -7.23 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 33 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.08 0.47 7.87 -51.93 -0.41 0.06 16 39 H 0.40 3.05 8.61 -40.82 -0.35 2.70 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.09 1.31 7.98 -51.93 -0.41 0.90 16 46 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.11 1.85 6.05 -51.93 -0.31 1.54 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.38 3.48 9.08 45.56 0.41 3.90 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -35.73 406.14 -7.89 -43.62 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -7.56 Total: 13.73 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.02 Total: 11.09 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.58 Total: -54.47 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.14 Total: -34.42 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.73 -7.89 -43.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099724795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.327 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds