Wall clock time and date at job start Wed Apr 1 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46880 * 2 1 4 4 O 1.42899 * 109.46870 * 119.99625 * 2 1 3 5 5 C 1.42904 * 113.99734 * 150.00127 * 4 2 1 6 6 C 1.50702 * 109.47198 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99744 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99898 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99817 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.57476 * 35.16075 * 9 8 6 11 11 C 1.53123 * 109.52509 * 275.00196 * 9 8 6 12 12 C 1.53036 * 109.27788 * 182.44210 * 11 9 8 13 13 N 1.46846 * 109.52384 * 59.18000 * 12 11 9 14 14 C 1.46903 * 110.99717 * 174.15896 * 13 12 11 15 15 C 1.50695 * 109.47089 * 66.04674 * 14 13 12 16 16 O 1.21300 * 120.00132 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00085 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00159 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00100 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99985 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99853 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00001 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47393 * 90.00181 * 22 20 18 24 24 H 1.48498 * 109.47293 * 210.00473 * 22 20 18 25 25 H 1.48503 * 109.46973 * 330.00140 * 22 20 18 26 26 C 1.46842 * 111.19700 * 298.25435 * 13 12 11 27 27 C 1.53041 * 109.52407 * 61.74724 * 26 13 12 28 28 H 1.08992 * 109.50537 * 60.79770 * 27 26 13 29 29 O 1.42900 * 109.50505 * 180.87834 * 27 26 13 30 30 H 1.08999 * 109.46558 * 299.99990 * 1 2 3 31 31 H 1.08996 * 109.47149 * 60.00343 * 1 2 3 32 32 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47110 * 239.99887 * 2 1 3 34 34 H 1.09001 * 109.46903 * 60.00166 * 3 2 1 35 35 H 1.08999 * 109.46620 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.46949 * 299.99779 * 3 2 1 37 37 H 1.08997 * 109.47221 * 60.00070 * 5 4 2 38 38 H 1.08998 * 109.47072 * 300.00242 * 5 4 2 39 39 H 0.96998 * 120.00183 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.50367 * 62.49755 * 11 9 8 41 41 H 1.09006 * 109.50264 * 302.38094 * 11 9 8 42 42 H 1.08999 * 109.46075 * 179.19317 * 12 11 9 43 43 H 1.08994 * 109.46383 * 299.17045 * 12 11 9 44 44 H 1.09007 * 109.46443 * 186.04380 * 14 13 12 45 45 H 1.08994 * 109.47048 * 306.04358 * 14 13 12 46 46 H 0.97003 * 119.99880 * 359.97438 * 17 15 14 47 47 H 0.97000 * 119.99528 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.46447 * 181.75636 * 26 13 12 49 49 H 1.08994 * 109.46873 * 301.72670 * 26 13 12 50 50 H 0.96696 * 113.99846 * 299.99875 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6694 -1.9988 2.2747 7 8 2.9488 -1.9292 3.2477 8 7 4.8303 -2.6799 2.3431 9 6 5.2227 -3.3350 3.5933 10 1 4.3361 -3.7178 4.0989 11 6 5.9324 -2.3250 4.4994 12 6 6.3935 -3.0295 5.7773 13 7 7.3044 -4.1279 5.4308 14 6 7.8755 -4.7389 6.6385 15 6 6.7819 -5.4146 7.4249 16 8 5.6390 -5.3893 7.0195 17 7 7.0738 -6.0471 8.5787 18 6 6.0790 -6.6623 9.2938 19 1 5.0615 -6.6404 8.9324 20 6 6.3800 -7.3148 10.4831 21 7 5.4265 -7.9049 11.1683 22 14 8.1402 -7.3545 11.1071 23 1 8.3825 -6.1782 11.9804 24 1 8.3625 -8.6011 11.8828 25 1 9.0751 -7.3158 9.9539 26 6 6.6309 -5.1342 4.6001 27 6 6.1769 -4.4926 3.2869 28 1 7.0453 -4.1159 2.7467 29 8 5.5036 -5.4671 2.4875 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 4.0200 -0.5873 0.7126 38 1 3.1810 -2.0706 0.1987 39 1 5.4064 -2.7358 1.5647 40 1 5.2441 -1.5197 4.7559 41 1 6.7970 -1.9135 3.9785 42 1 6.9118 -2.3164 6.4183 43 1 5.5272 -3.4289 6.3046 44 1 8.6260 -5.4760 6.3525 45 1 8.3399 -3.9666 7.2516 46 1 7.9878 -6.0677 8.9027 47 1 5.6367 -8.3608 11.9983 48 1 7.3217 -5.9498 4.3859 49 1 5.7635 -5.5236 5.1329 50 1 6.0488 -6.2319 2.2576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099724796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:40 Heat of formation + Delta-G solvation = -155.443281 kcal Electronic energy + Delta-G solvation = -30831.627502 eV Core-core repulsion = 26473.354233 eV Total energy + Delta-G solvation = -4358.273269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33878 -39.44961 -38.40387 -37.66510 -35.91394 -34.73207 -33.90101 -33.09234 -31.86461 -31.51112 -29.57265 -28.40931 -27.54714 -26.70998 -24.43250 -23.12737 -22.40298 -21.65331 -20.60248 -20.03918 -19.48554 -18.35282 -17.41800 -17.35436 -17.20729 -16.33027 -16.06712 -15.99843 -15.30392 -15.21740 -14.95042 -14.73768 -14.40823 -14.14340 -13.89004 -13.73507 -13.65433 -13.22953 -13.13376 -12.98734 -12.80937 -12.55248 -12.50978 -12.32600 -12.28629 -12.23025 -11.82921 -11.76214 -11.36175 -11.29326 -11.07214 -11.03302 -10.81730 -10.63868 -10.43435 -10.06340 -10.05435 -9.97053 -9.70189 -9.54807 -9.38020 -9.06078 -8.24070 -7.59334 -6.37752 -3.89236 2.58420 2.65320 2.97546 3.02409 3.11148 3.60212 3.71923 3.91930 4.04285 4.27728 4.46739 4.60618 4.63018 4.68770 4.78193 4.82575 4.82967 4.93988 5.08854 5.11591 5.18783 5.24135 5.32901 5.35440 5.41823 5.44119 5.50193 5.58249 5.64571 5.76436 5.82887 5.83095 5.85883 5.88362 6.02189 6.08796 6.13515 6.41946 6.48504 6.60707 6.82812 7.11619 7.20583 7.44680 7.49216 7.62377 8.08549 8.21012 8.50345 8.87768 9.34923 9.72632 10.74932 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002040 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.904605 B =13725.228906 C =14182.957547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.356 6.356 5 C 0.046 3.954 6 C 0.512 3.488 7 O -0.514 6.514 8 N -0.718 5.718 9 C 0.157 3.843 10 H 0.098 0.902 11 C -0.118 4.118 12 C 0.040 3.960 13 N -0.510 5.510 14 C 0.039 3.961 15 C 0.412 3.588 16 O -0.574 6.574 17 N -0.581 5.581 18 C -0.308 4.308 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.876 5.876 22 Si 0.881 3.119 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.002 3.998 27 C 0.108 3.892 28 H 0.061 0.939 29 O -0.562 6.562 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.398 0.602 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.371 0.629 47 H 0.274 0.726 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 13.737 -23.930 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.275 6.275 5 C -0.034 4.034 6 C 0.296 3.704 7 O -0.388 6.388 8 N -0.370 5.370 9 C 0.052 3.948 10 H 0.116 0.884 11 C -0.157 4.157 12 C -0.089 4.089 13 N -0.234 5.234 14 C -0.093 4.093 15 C 0.198 3.802 16 O -0.459 6.459 17 N -0.219 5.219 18 C -0.437 4.437 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.516 5.516 22 Si 0.707 3.293 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.194 1.194 26 C -0.126 4.126 27 C 0.048 3.952 28 H 0.079 0.921 29 O -0.366 6.366 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.204 0.796 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.116 0.884 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.620 14.307 -23.346 27.506 hybrid contribution 1.780 -0.984 0.520 2.100 sum 4.400 13.323 -22.826 26.793 Atomic orbital electron populations 1.21857 0.93250 1.03010 1.02619 1.22175 0.95432 0.92450 0.87869 1.22317 1.01454 0.96776 1.02816 1.88094 1.34610 1.69653 1.35110 1.22222 0.88180 0.96990 0.96048 1.20208 0.81240 0.79243 0.89690 1.90770 1.51468 1.59061 1.37530 1.45809 1.22004 1.54238 1.14951 1.21026 0.98558 0.90784 0.84390 0.88424 1.21890 0.99936 0.97897 0.95938 1.22252 0.97306 0.92992 0.96306 1.62442 1.34796 1.09873 1.16332 1.22082 0.96496 0.99312 0.91363 1.21028 0.90725 0.84888 0.83604 1.90462 1.21989 1.64170 1.69239 1.42395 1.09631 1.48812 1.21098 1.19464 0.91921 1.29531 1.02809 0.86287 1.25093 0.98025 0.96736 0.96290 1.69629 1.32132 1.34220 1.15592 0.86655 0.84132 0.78934 0.79573 1.19542 1.20114 1.19427 1.23093 1.01309 0.94457 0.93783 1.21964 0.93413 0.88346 0.91499 0.92143 1.86553 1.43662 1.34545 1.71873 0.91516 0.91190 0.91805 0.92107 0.91498 0.92532 0.91557 0.90551 0.90378 0.76875 0.90527 0.91311 0.90867 0.90758 0.89092 0.88976 0.79598 0.91504 0.91173 0.88366 0.77498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.56 37.16 0.36 -0.76 16 2 C 0.08 0.63 3.34 -26.72 -0.09 0.54 16 3 C -0.18 -1.19 9.53 37.16 0.35 -0.83 16 4 O -0.36 -4.27 9.52 -55.14 -0.52 -4.79 16 5 C 0.05 0.44 6.23 36.01 0.22 0.66 16 6 C 0.51 6.92 7.87 -10.98 -0.09 6.83 16 7 O -0.51 -9.73 16.17 -14.35 -0.23 -9.96 16 8 N -0.72 -8.19 5.00 -53.68 -0.27 -8.46 16 9 C 0.16 2.21 2.20 -67.80 -0.15 2.06 16 10 H 0.10 1.81 7.59 -51.93 -0.39 1.42 16 11 C -0.12 -1.59 5.67 -26.65 -0.15 -1.74 16 12 C 0.04 0.62 5.09 -3.83 -0.02 0.60 16 13 N -0.51 -7.61 4.86 -236.12 -1.15 -8.76 16 14 C 0.04 0.62 5.86 -4.98 -0.03 0.59 16 15 C 0.41 8.85 7.20 -10.99 -0.08 8.77 16 16 O -0.57 -14.42 11.20 5.54 0.06 -14.35 16 17 N -0.58 -13.41 5.09 -10.96 -0.06 -13.47 16 18 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 22 Si 0.88 19.06 27.74 -169.99 -4.71 14.34 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.25 6.52 56.52 0.37 -4.89 16 26 C 0.00 0.03 4.60 -3.83 -0.02 0.01 16 27 C 0.11 1.35 3.14 -26.65 -0.08 1.26 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 O -0.56 -6.90 13.23 -35.23 -0.47 -7.36 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 38 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.40 3.17 8.60 -40.82 -0.35 2.82 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 43 H 0.07 1.47 6.00 -51.93 -0.31 1.16 16 44 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 46 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 49 H 0.10 1.95 5.36 -51.93 -0.28 1.68 16 50 H 0.38 3.06 9.08 45.56 0.41 3.47 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -36.36 400.66 -7.97 -44.33 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -7.42 Total: 16.82 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.02 Total: 10.31 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.70 Total: -55.36 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.16 Total: -36.47 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.36 -7.97 -44.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099724796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.115 kcal (2) G-P(sol) polarization free energy of solvation -36.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds