Wall clock time and date at job start Wed Apr 1 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46880 * 2 1 4 4 O 1.42899 * 109.46870 * 119.99625 * 2 1 3 5 5 C 1.42904 * 113.99734 * 150.00127 * 4 2 1 6 6 C 1.50702 * 109.47198 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99744 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99898 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99817 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.57476 * 35.16075 * 9 8 6 11 11 C 1.53123 * 109.52509 * 275.00196 * 9 8 6 12 12 C 1.53036 * 109.27788 * 182.44210 * 11 9 8 13 13 N 1.46846 * 109.52384 * 59.18000 * 12 11 9 14 14 C 1.46903 * 110.99717 * 174.15896 * 13 12 11 15 15 C 1.50695 * 109.47089 * 66.04674 * 14 13 12 16 16 O 1.21300 * 120.00132 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00085 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00159 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00100 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99985 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99853 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00001 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47393 * 90.00181 * 22 20 18 24 24 H 1.48498 * 109.47293 * 210.00473 * 22 20 18 25 25 H 1.48503 * 109.46973 * 330.00140 * 22 20 18 26 26 C 1.46842 * 111.19700 * 298.25435 * 13 12 11 27 27 C 1.53041 * 109.52407 * 61.74724 * 26 13 12 28 28 H 1.08992 * 109.50537 * 60.79770 * 27 26 13 29 29 O 1.42900 * 109.50505 * 180.87834 * 27 26 13 30 30 H 1.08999 * 109.46558 * 299.99990 * 1 2 3 31 31 H 1.08996 * 109.47149 * 60.00343 * 1 2 3 32 32 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47110 * 239.99887 * 2 1 3 34 34 H 1.09001 * 109.46903 * 60.00166 * 3 2 1 35 35 H 1.08999 * 109.46620 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.46949 * 299.99779 * 3 2 1 37 37 H 1.08997 * 109.47221 * 60.00070 * 5 4 2 38 38 H 1.08998 * 109.47072 * 300.00242 * 5 4 2 39 39 H 0.96998 * 120.00183 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.50367 * 62.49755 * 11 9 8 41 41 H 1.09006 * 109.50264 * 302.38094 * 11 9 8 42 42 H 1.08999 * 109.46075 * 179.19317 * 12 11 9 43 43 H 1.08994 * 109.46383 * 299.17045 * 12 11 9 44 44 H 1.09007 * 109.46443 * 186.04380 * 14 13 12 45 45 H 1.08994 * 109.47048 * 306.04358 * 14 13 12 46 46 H 0.97003 * 119.99880 * 359.97438 * 17 15 14 47 47 H 0.97000 * 119.99528 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.46447 * 181.75636 * 26 13 12 49 49 H 1.08994 * 109.46873 * 301.72670 * 26 13 12 50 50 H 0.96696 * 113.99846 * 299.99875 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6694 -1.9988 2.2747 7 8 2.9488 -1.9292 3.2477 8 7 4.8303 -2.6799 2.3431 9 6 5.2227 -3.3350 3.5933 10 1 4.3361 -3.7178 4.0989 11 6 5.9324 -2.3250 4.4994 12 6 6.3935 -3.0295 5.7773 13 7 7.3044 -4.1279 5.4308 14 6 7.8755 -4.7389 6.6385 15 6 6.7819 -5.4146 7.4249 16 8 5.6390 -5.3893 7.0195 17 7 7.0738 -6.0471 8.5787 18 6 6.0790 -6.6623 9.2938 19 1 5.0615 -6.6404 8.9324 20 6 6.3800 -7.3148 10.4831 21 7 5.4265 -7.9049 11.1683 22 14 8.1402 -7.3545 11.1071 23 1 8.3825 -6.1782 11.9804 24 1 8.3625 -8.6011 11.8828 25 1 9.0751 -7.3158 9.9539 26 6 6.6309 -5.1342 4.6001 27 6 6.1769 -4.4926 3.2869 28 1 7.0453 -4.1159 2.7467 29 8 5.5036 -5.4671 2.4875 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 4.0200 -0.5873 0.7126 38 1 3.1810 -2.0706 0.1987 39 1 5.4064 -2.7358 1.5647 40 1 5.2441 -1.5197 4.7559 41 1 6.7970 -1.9135 3.9785 42 1 6.9118 -2.3164 6.4183 43 1 5.5272 -3.4289 6.3046 44 1 8.6260 -5.4760 6.3525 45 1 8.3399 -3.9666 7.2516 46 1 7.9878 -6.0677 8.9027 47 1 5.6367 -8.3608 11.9983 48 1 7.3217 -5.9498 4.3859 49 1 5.7635 -5.5236 5.1329 50 1 6.0488 -6.2319 2.2576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099724796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:39 Heat of formation + Delta-G solvation = -189.434666 kcal Electronic energy + Delta-G solvation = -30833.101479 eV Core-core repulsion = 26473.354233 eV Total energy + Delta-G solvation = -4359.747246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.53827 -40.75228 -39.51917 -38.77663 -37.14209 -36.08736 -35.62629 -33.83856 -33.75346 -32.74825 -30.73813 -29.48825 -28.24504 -27.88275 -26.13000 -24.31985 -23.65530 -22.25162 -21.68730 -21.39124 -21.21209 -20.17030 -18.44066 -18.32905 -18.09730 -17.75088 -17.25918 -16.98934 -16.79825 -16.42439 -16.23545 -15.78212 -15.60303 -15.54907 -15.23642 -15.02516 -14.82298 -14.63551 -14.28827 -14.10185 -13.90402 -13.71981 -13.52320 -13.47692 -13.32194 -13.07097 -13.00901 -12.88604 -12.48221 -12.44118 -12.36254 -12.24687 -12.13940 -11.99513 -11.66822 -11.57047 -11.47934 -11.09733 -11.01938 -10.79476 -10.64297 -10.24812 -10.15101 -9.12348 -8.44878 -6.06031 1.28122 1.33976 1.43342 1.55262 1.77254 1.89582 2.20820 2.77804 2.93328 2.99107 3.11899 3.19652 3.65090 3.74335 3.99550 4.00043 4.01687 4.09959 4.13513 4.18192 4.20799 4.28396 4.32643 4.36637 4.42138 4.48041 4.63325 4.69631 4.75060 4.80734 4.84048 4.86656 4.91569 4.93378 4.95722 5.15187 5.26951 5.28432 5.33451 5.42015 5.49736 5.82386 5.93050 5.95367 6.17168 6.54295 6.56477 6.85007 6.85830 7.24866 7.35602 7.93510 8.72985 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002040 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.904605 B =13725.228906 C =14182.957547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.399 6.399 5 C 0.051 3.949 6 C 0.503 3.497 7 O -0.583 6.583 8 N -0.698 5.698 9 C 0.156 3.844 10 H 0.035 0.965 11 C -0.105 4.105 12 C 0.040 3.960 13 N -0.486 5.486 14 C 0.047 3.953 15 C 0.412 3.588 16 O -0.616 6.616 17 N -0.586 5.586 18 C -0.330 4.330 19 H 0.048 0.952 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.226 1.226 26 C 0.001 3.999 27 C 0.122 3.878 28 H 0.105 0.895 29 O -0.577 6.577 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.420 0.580 40 H 0.058 0.942 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.018 0.982 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.391 0.609 47 H 0.279 0.721 48 H 0.094 0.906 49 H 0.041 0.959 50 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 15.144 -27.074 32.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 C -0.230 4.230 4 O -0.318 6.318 5 C -0.028 4.028 6 C 0.290 3.710 7 O -0.462 6.462 8 N -0.351 5.351 9 C 0.050 3.950 10 H 0.054 0.946 11 C -0.144 4.144 12 C -0.088 4.088 13 N -0.210 5.210 14 C -0.085 4.085 15 C 0.200 3.800 16 O -0.502 6.502 17 N -0.227 5.227 18 C -0.459 4.459 19 H 0.067 0.933 20 C -0.217 4.217 21 N -0.576 5.576 22 Si 0.788 3.212 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.149 1.149 26 C -0.128 4.128 27 C 0.062 3.938 28 H 0.122 0.878 29 O -0.385 6.385 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.258 0.742 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.037 0.963 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.227 0.773 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.059 0.941 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.867 15.716 -26.579 31.865 hybrid contribution -0.026 -1.414 1.379 1.976 sum 7.840 14.302 -25.200 30.018 Atomic orbital electron populations 1.21910 0.93498 1.02475 1.03035 1.22434 0.95412 0.93154 0.87562 1.22300 1.01935 0.95881 1.02925 1.88061 1.35805 1.70415 1.37547 1.22340 0.88432 0.98285 0.93740 1.21141 0.80769 0.78605 0.90462 1.90747 1.53556 1.61615 1.40250 1.45589 1.21855 1.52880 1.14782 1.20819 0.96692 0.92070 0.85376 0.94613 1.21770 1.00641 0.96910 0.95092 1.22219 0.95669 0.93630 0.97320 1.62563 1.33645 1.09213 1.15537 1.22348 0.94608 1.00612 0.90948 1.22473 0.91723 0.82959 0.82845 1.90515 1.24847 1.64788 1.70042 1.42218 1.09427 1.49544 1.21532 1.18977 0.90607 1.31889 1.04442 0.93333 1.26226 1.04540 0.95268 0.95663 1.69826 1.35719 1.35611 1.16442 0.85310 0.76704 0.79095 0.80040 1.18222 1.20123 1.14875 1.23089 0.99663 0.95453 0.94611 1.21846 0.93814 0.87526 0.90578 0.87766 1.86523 1.44928 1.35573 1.71475 0.93298 0.88555 0.92817 0.89512 0.93395 0.91722 0.89418 0.86849 0.87413 0.74189 0.92307 0.87538 0.88940 0.96318 0.85247 0.85608 0.77341 0.91152 0.88763 0.94079 0.75180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.56 71.99 0.69 -1.51 16 2 C 0.07 1.03 3.34 30.60 0.10 1.14 16 3 C -0.17 -2.01 9.53 71.98 0.69 -1.32 16 4 O -0.40 -9.43 9.52 -129.94 -1.24 -10.66 16 5 C 0.05 0.88 6.23 71.24 0.44 1.32 16 6 C 0.50 13.70 7.87 87.66 0.69 14.39 16 7 O -0.58 -23.76 16.17 16.02 0.26 -23.50 16 8 N -0.70 -15.09 5.00 -442.15 -2.21 -17.30 16 9 C 0.16 4.45 2.20 45.07 0.10 4.55 16 10 H 0.04 1.47 7.59 -2.39 -0.02 1.45 16 11 C -0.11 -2.78 5.67 30.65 0.17 -2.60 16 12 C 0.04 1.25 5.09 86.33 0.44 1.69 16 13 N -0.49 -13.36 4.86 -900.95 -4.38 -17.74 16 14 C 0.05 1.31 5.86 85.55 0.50 1.81 16 15 C 0.41 17.96 7.20 87.66 0.63 18.59 16 16 O -0.62 -33.35 11.20 -3.09 -0.03 -33.38 16 17 N -0.59 -27.16 5.09 -306.99 -1.56 -28.72 16 18 C -0.33 -19.46 10.16 84.04 0.85 -18.60 16 19 H 0.05 3.47 7.39 -2.91 -0.02 3.44 16 20 C -0.02 -1.03 5.50 84.93 0.47 -0.57 16 21 N -0.94 -57.29 13.96 21.66 0.30 -56.99 16 22 Si 0.97 38.61 27.74 68.60 1.90 40.52 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.23 -7.36 6.52 99.48 0.65 -6.72 16 26 C 0.00 0.02 4.60 86.33 0.40 0.42 16 27 C 0.12 2.82 3.14 30.65 0.10 2.91 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 O -0.58 -13.34 13.23 -148.98 -1.97 -15.31 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.79 7.79 -2.39 -0.02 0.77 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.64 7.87 -2.39 -0.02 0.62 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.11 1.10 7.87 -2.39 -0.02 1.08 16 38 H 0.11 1.20 8.08 -2.39 -0.02 1.18 16 39 H 0.42 5.23 8.60 -92.71 -0.80 4.43 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.09 2.48 8.06 -2.39 -0.02 2.46 16 43 H 0.02 0.80 6.00 -2.39 -0.01 0.78 16 44 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 45 H 0.13 2.83 8.06 -2.39 -0.02 2.81 16 46 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 47 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 48 H 0.09 2.28 8.12 -2.38 -0.02 2.26 16 49 H 0.04 1.73 5.36 -2.39 -0.01 1.72 16 50 H 0.40 5.47 9.08 -74.06 -0.67 4.80 16 Total: -1.00 -94.35 400.66 -3.75 -98.10 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -1.09 Total: 42.78 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 6.27 Total: 22.21 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -7.85 Total: -120.75 kcal Atomic # 8 Polarization: -79.87 SS G_CDS: -2.98 Total: -82.86 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.52 kcal Total: -94.35 -3.75 -98.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099724796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.338 kcal (2) G-P(sol) polarization free energy of solvation -94.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds