Wall clock time and date at job start Wed Apr 1 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47041 * 2 1 4 4 O 1.42900 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.42894 * 114.00088 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47331 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99656 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00240 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00119 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.52440 * 34.86685 * 9 8 6 11 11 C 1.53099 * 109.52641 * 274.67066 * 9 8 6 12 12 C 1.53034 * 109.29509 * 182.43578 * 11 9 8 13 13 N 1.46847 * 109.51345 * 59.18740 * 12 11 9 14 14 C 1.46898 * 110.99897 * 174.16738 * 13 12 11 15 15 C 1.50700 * 109.47111 * 293.95217 * 14 13 12 16 16 O 1.21292 * 119.99952 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99634 * 180.02562 * 15 14 13 18 18 C 1.37105 * 119.99732 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99698 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99736 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00411 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99392 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46990 * 90.00446 * 22 20 18 24 24 H 1.48497 * 109.46875 * 209.99887 * 22 20 18 25 25 H 1.48500 * 109.47508 * 330.00336 * 22 20 18 26 26 C 1.46854 * 111.19790 * 298.26320 * 13 12 11 27 27 C 1.53039 * 109.52227 * 61.74204 * 26 13 12 28 28 H 1.09000 * 109.50337 * 180.88158 * 27 26 13 29 29 O 1.42897 * 109.50469 * 60.80204 * 27 26 13 30 30 H 1.09006 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47490 * 300.00350 * 1 2 3 32 32 H 1.08998 * 109.47095 * 60.00519 * 1 2 3 33 33 H 1.09001 * 109.47490 * 239.99649 * 2 1 3 34 34 H 1.09008 * 109.47164 * 119.99445 * 2 1 3 35 35 H 1.08992 * 109.47076 * 59.99619 * 3 2 1 36 36 H 1.08998 * 109.46752 * 299.99691 * 3 2 1 37 37 H 1.09001 * 109.47251 * 59.99738 * 5 4 3 38 38 H 1.09007 * 109.46952 * 299.99677 * 5 4 3 39 39 H 0.97008 * 119.99825 * 359.97438 * 8 6 5 40 40 H 1.09007 * 109.48839 * 62.49221 * 11 9 8 41 41 H 1.09009 * 109.50682 * 302.39007 * 11 9 8 42 42 H 1.09002 * 109.46271 * 299.17460 * 12 11 9 43 43 H 1.08994 * 109.46242 * 179.19760 * 12 11 9 44 44 H 1.09000 * 109.47095 * 53.95538 * 14 13 12 45 45 H 1.09006 * 109.47048 * 173.94984 * 14 13 12 46 46 H 0.96993 * 120.00518 * 0.02562 * 17 15 14 47 47 H 0.97000 * 120.00109 * 179.97438 * 21 20 18 48 48 H 1.08993 * 109.46229 * 181.76227 * 26 13 12 49 49 H 1.09008 * 109.45822 * 301.73281 * 26 13 12 50 50 H 0.96704 * 113.99477 * 59.99502 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5524 2.6291 -0.0012 7 8 6.0740 1.5341 -0.0002 8 7 6.3163 3.7394 -0.0012 9 6 7.7767 3.6238 -0.0018 10 1 8.0731 2.7549 -0.5893 11 6 8.2781 3.4660 1.4362 12 6 9.8072 3.4067 1.4349 13 7 10.3453 4.6380 0.8426 14 6 11.8098 4.6775 0.9500 15 6 12.2046 4.7755 2.4011 16 8 11.3499 4.8097 3.2611 17 7 13.5072 4.8263 2.7431 18 6 13.8664 4.9161 4.0632 19 1 13.1054 4.9456 4.8290 20 6 15.2094 4.9679 4.4158 21 7 16.1353 4.9315 3.4841 22 14 15.6986 5.0894 6.2145 23 1 15.8597 3.7245 6.7770 24 1 16.9824 5.8269 6.3295 25 1 14.6427 5.8134 6.9670 26 6 9.9159 4.7871 -0.5538 27 6 8.3899 4.8874 -0.6117 28 1 8.0705 4.9824 -1.6495 29 8 7.9586 6.0322 0.1269 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.7289 3.2892 0.8887 38 1 3.7282 3.2886 -0.8913 39 1 5.8991 4.6152 -0.0016 40 1 7.8785 2.5453 1.8616 41 1 7.9473 4.3165 2.0324 42 1 10.1370 2.5480 0.8500 43 1 10.1677 3.3087 2.4588 44 1 12.2304 3.7686 0.5197 45 1 12.1905 5.5448 0.4105 46 1 14.1907 4.8002 2.0553 47 1 17.0728 4.9680 3.7303 48 1 10.3555 5.6915 -0.9743 49 1 10.2451 3.9219 -1.1294 50 1 8.3121 6.8694 -0.2036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099731807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:43 Heat of formation + Delta-G solvation = -163.747932 kcal Electronic energy + Delta-G solvation = -30174.228011 eV Core-core repulsion = 25815.594625 eV Total energy + Delta-G solvation = -4358.633386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36599 -39.22965 -38.16482 -37.69048 -35.63929 -34.73582 -34.05057 -33.81616 -31.70619 -31.12196 -29.86900 -28.76524 -26.99698 -25.87045 -24.47296 -23.14406 -22.61045 -21.97030 -20.58456 -19.99106 -19.18295 -17.84937 -17.49286 -17.25651 -16.97905 -16.85575 -16.07425 -15.89472 -15.41314 -15.28853 -14.98463 -14.82077 -14.51569 -14.29792 -13.94758 -13.91146 -13.77003 -13.49768 -13.32406 -12.86355 -12.71916 -12.52154 -12.50548 -12.36891 -12.10293 -11.78848 -11.59301 -11.48378 -11.33543 -11.28892 -11.18529 -11.07171 -10.77248 -10.51763 -10.37082 -10.20284 -10.06640 -10.05372 -9.84483 -9.46115 -9.10459 -8.39639 -7.95101 -7.81194 -6.39665 -3.80220 2.45088 2.55580 3.19511 3.28047 3.34025 3.61922 3.86552 3.93504 4.17856 4.28957 4.48002 4.53115 4.59286 4.65973 4.75397 4.82354 4.87577 4.89604 4.90676 5.04222 5.06381 5.08742 5.26157 5.27561 5.30130 5.48832 5.50946 5.58104 5.58517 5.67782 5.71543 5.76060 5.80778 5.81741 5.95278 6.08422 6.25471 6.31372 6.55295 6.59528 6.70791 7.27882 7.36061 7.39589 7.57379 7.62910 8.08600 8.08922 8.64399 9.20670 9.56988 10.09095 10.78154 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.001781 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.550000 B =15714.260001 C =16537.656199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.046 3.954 6 C 0.511 3.489 7 O -0.520 6.520 8 N -0.717 5.717 9 C 0.155 3.845 10 H 0.094 0.906 11 C -0.117 4.117 12 C 0.056 3.944 13 N -0.504 5.504 14 C 0.045 3.955 15 C 0.444 3.556 16 O -0.574 6.574 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.023 3.977 27 C 0.108 3.892 28 H 0.061 0.939 29 O -0.548 6.548 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.406 0.594 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.022 0.978 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.081 0.919 49 H 0.040 0.960 50 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 -1.341 -13.909 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.034 4.034 6 C 0.296 3.704 7 O -0.395 6.395 8 N -0.371 5.371 9 C 0.051 3.949 10 H 0.112 0.888 11 C -0.156 4.156 12 C -0.072 4.072 13 N -0.228 5.228 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.458 6.458 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.106 4.106 27 C 0.047 3.953 28 H 0.079 0.921 29 O -0.353 6.353 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.240 0.760 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.041 0.959 43 H 0.126 0.874 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.058 0.942 50 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -24.880 -2.359 -12.696 28.031 hybrid contribution 1.175 0.548 -0.439 1.369 sum -23.705 -1.811 -13.135 27.161 Atomic orbital electron populations 1.21697 0.94653 1.02352 1.01969 1.21455 0.95597 0.95394 1.03746 1.22640 0.80489 0.98338 1.00236 1.88013 1.19556 1.25232 1.95431 1.22176 0.91741 0.86948 1.02573 1.20251 0.88608 0.84748 0.76777 1.90747 1.74524 1.26457 1.47741 1.45848 1.06778 1.08819 1.75629 1.21127 0.78658 0.96585 0.98549 0.88816 1.21849 0.95413 1.02920 0.95423 1.22233 0.93883 0.88544 1.02584 1.61468 1.08621 1.38237 1.14501 1.21857 0.88004 1.01314 0.97404 1.19720 0.83441 0.84430 0.89457 1.90499 1.49480 1.54927 1.50914 1.41864 1.05228 1.64362 1.08744 1.19701 0.92183 1.47183 0.83682 0.87918 1.25243 0.95409 0.97407 0.99862 1.69609 1.01002 1.50737 1.33075 0.85867 0.77934 0.78358 0.82187 1.20457 1.20964 1.19423 1.22800 0.95446 1.01637 0.90737 1.22000 0.92744 0.86631 0.93879 0.92142 1.86480 1.73386 1.16234 1.59245 0.91925 0.92493 0.92557 0.90975 0.90883 0.93096 0.93214 0.90172 0.90396 0.75965 0.91476 0.89736 0.95940 0.87426 0.93528 0.89431 0.77548 0.91928 0.90021 0.94200 0.77305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.87 6.30 -26.73 -0.17 -1.04 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 O -0.36 -4.07 9.88 -55.14 -0.54 -4.62 16 5 C 0.05 0.40 6.42 36.00 0.23 0.63 16 6 C 0.51 6.22 7.88 -10.99 -0.09 6.14 16 7 O -0.52 -8.80 16.16 -14.36 -0.23 -9.03 16 8 N -0.72 -7.47 5.05 -53.70 -0.27 -7.74 16 9 C 0.16 1.90 2.31 -67.82 -0.16 1.74 16 10 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 11 C -0.12 -1.78 5.52 -26.66 -0.15 -1.93 16 12 C 0.06 0.95 5.11 -3.84 -0.02 0.93 16 13 N -0.50 -8.17 4.28 -236.11 -1.01 -9.18 16 14 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 15 C 0.44 10.44 7.46 -10.98 -0.08 10.36 16 16 O -0.57 -15.45 13.92 5.55 0.08 -15.37 16 17 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 22 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.02 0.27 5.12 -3.83 -0.02 0.25 16 27 C 0.11 1.10 3.42 -26.65 -0.09 1.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 O -0.55 -5.76 12.06 -35.23 -0.42 -6.19 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.41 3.27 8.12 -40.82 -0.33 2.94 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.42 7.80 -51.92 -0.40 1.01 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 2.24 5.80 -51.93 -0.30 1.94 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.09 1.36 7.98 -51.93 -0.41 0.95 16 46 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 49 H 0.04 0.45 8.14 -51.92 -0.42 0.02 16 50 H 0.38 2.73 9.08 45.56 0.41 3.15 16 LS Contribution 408.28 15.07 6.15 6.15 Total: -1.00 -35.63 408.28 -8.43 -44.06 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -7.60 Total: 12.78 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -0.22 Total: 11.20 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.61 Total: -55.15 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.12 Total: -35.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.63 -8.43 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099731807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.688 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds