Wall clock time and date at job start Wed Apr 1 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 O 1.42907 * 109.46670 * 180.02562 * 3 2 1 5 5 C 1.42902 * 113.99609 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47125 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99807 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00255 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00159 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.57381 * 34.83987 * 9 8 6 11 11 C 1.53120 * 109.52015 * 274.67840 * 9 8 6 12 12 C 1.53036 * 109.27615 * 182.43609 * 11 9 8 13 13 N 1.46856 * 109.52038 * 59.18242 * 12 11 9 14 14 C 1.46897 * 110.99685 * 174.15425 * 13 12 11 15 15 C 1.50694 * 109.47717 * 294.21022 * 14 13 12 16 16 O 1.21294 * 119.99832 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00324 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99881 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00357 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99737 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00184 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47401 * 60.00085 * 22 20 18 24 24 H 1.48509 * 109.47111 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47266 * 299.99668 * 22 20 18 26 26 C 1.46846 * 111.19881 * 298.25730 * 13 12 11 27 27 C 1.53033 * 109.52164 * 61.73890 * 26 13 12 28 28 H 1.09001 * 109.50753 * 60.80574 * 27 26 13 29 29 O 1.42903 * 109.50133 * 180.87698 * 27 26 13 30 30 H 1.09000 * 109.46953 * 60.00143 * 1 2 3 31 31 H 1.09002 * 109.47456 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47520 * 300.00279 * 1 2 3 33 33 H 1.09002 * 109.46948 * 239.99302 * 2 1 3 34 34 H 1.09000 * 109.46953 * 119.99856 * 2 1 3 35 35 H 1.08996 * 109.47319 * 60.00299 * 3 2 1 36 36 H 1.09000 * 109.47137 * 299.99744 * 3 2 1 37 37 H 1.08998 * 109.47685 * 59.99331 * 5 4 3 38 38 H 1.09004 * 109.46692 * 299.99579 * 5 4 3 39 39 H 0.97003 * 120.00258 * 359.97438 * 8 6 5 40 40 H 1.09004 * 109.50336 * 62.49960 * 11 9 8 41 41 H 1.08996 * 109.53445 * 302.40476 * 11 9 8 42 42 H 1.08993 * 109.46807 * 299.16816 * 12 11 9 43 43 H 1.08999 * 109.46287 * 179.19324 * 12 11 9 44 44 H 1.08996 * 109.46986 * 54.21673 * 14 13 12 45 45 H 1.09001 * 109.46628 * 174.21176 * 14 13 12 46 46 H 0.96991 * 119.99263 * 359.97438 * 17 15 14 47 47 H 0.97000 * 120.00052 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.45879 * 301.72618 * 26 13 12 49 49 H 1.08991 * 109.46207 * 181.75781 * 26 13 12 50 50 H 0.96700 * 114.00311 * 300.00583 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0502 2.7479 -0.0001 6 6 5.5525 2.6289 -0.0014 7 8 6.0741 1.5339 -0.0022 8 7 6.3165 3.7391 -0.0007 9 6 7.7770 3.6234 -0.0014 10 1 8.0742 2.7549 -0.5891 11 6 8.2783 3.4643 1.4366 12 6 9.8075 3.4051 1.4349 13 7 10.3457 4.6368 0.8433 14 6 11.8102 4.6761 0.9508 15 6 12.2052 4.7667 2.4022 16 8 11.3508 4.7952 3.2626 17 7 13.5080 4.8161 2.7442 18 6 13.8673 4.8980 4.0647 19 1 13.1065 4.9233 4.8308 20 6 15.2103 4.9483 4.4173 21 7 16.1361 4.9170 3.4852 22 14 15.7000 5.0592 6.2166 23 1 15.1823 3.8729 6.9446 24 1 17.1806 5.0998 6.3251 25 1 15.1267 6.2936 6.8105 26 6 9.9161 4.7871 -0.5528 27 6 8.3901 4.8874 -0.6104 28 1 8.0612 5.7602 -0.0463 29 8 7.9712 5.0131 -1.9708 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7290 3.2884 0.8903 38 1 3.7282 3.2892 -0.8897 39 1 5.8994 4.6149 0.0004 40 1 7.8790 2.5433 1.8614 41 1 7.9476 4.3139 2.0340 42 1 10.1371 2.5469 0.8493 43 1 10.1683 3.3062 2.4586 44 1 12.2309 3.7697 0.5156 45 1 12.1904 5.5464 0.4158 46 1 14.1912 4.7929 2.0562 47 1 17.0737 4.9525 3.7314 48 1 10.2451 3.9224 -1.1291 49 1 10.3556 5.6917 -0.9727 50 1 8.3254 5.7922 -2.4210 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099731810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:54 Heat of formation + Delta-G solvation = -166.140744 kcal Electronic energy + Delta-G solvation = -30037.090779 eV Core-core repulsion = 25678.353633 eV Total energy + Delta-G solvation = -4358.737146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.35946 -39.22579 -38.19265 -37.69922 -36.06032 -34.81702 -34.04018 -33.86324 -31.79330 -31.16535 -29.69183 -28.77628 -27.00967 -25.86621 -24.50491 -23.20679 -22.56965 -21.96110 -20.66792 -20.05603 -19.23640 -17.92176 -17.51423 -17.34354 -17.23542 -16.84204 -16.09628 -16.06579 -15.40945 -15.26822 -14.97395 -14.71198 -14.56313 -14.17080 -14.06838 -13.92590 -13.76624 -13.54337 -13.38502 -12.96466 -12.83912 -12.49651 -12.42021 -12.40927 -12.35953 -11.94312 -11.56442 -11.39377 -11.33259 -11.28702 -11.25938 -11.09162 -10.78423 -10.55594 -10.44491 -10.29378 -10.21911 -10.05276 -9.83248 -9.48516 -9.14887 -8.48328 -8.00622 -7.90784 -6.42617 -3.83514 2.48935 2.55664 3.19531 3.25517 3.29589 3.63223 3.68676 3.88441 4.06836 4.23929 4.48161 4.54127 4.61564 4.67262 4.77568 4.84133 4.86145 4.90932 4.97768 5.03938 5.05398 5.07200 5.23907 5.24949 5.31022 5.34747 5.47291 5.58969 5.60077 5.68485 5.72534 5.74060 5.81430 5.81886 5.89823 6.01990 6.21775 6.26866 6.39209 6.47969 6.71289 7.17656 7.22676 7.34993 7.45607 7.54204 8.04849 8.10079 8.60389 9.16891 9.52970 10.04525 10.74945 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.001785 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.030296 B =15682.390453 C =16788.104063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.046 3.954 6 C 0.514 3.486 7 O -0.519 6.519 8 N -0.716 5.716 9 C 0.157 3.843 10 H 0.091 0.909 11 C -0.120 4.120 12 C 0.052 3.948 13 N -0.512 5.512 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.577 6.577 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.027 3.973 27 C 0.103 3.897 28 H 0.072 0.928 29 O -0.564 6.564 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.400 0.600 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.028 0.972 43 H 0.112 0.888 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.041 0.959 49 H 0.081 0.919 50 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.244 -0.726 -12.212 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.034 4.034 6 C 0.299 3.701 7 O -0.393 6.393 8 N -0.369 5.369 9 C 0.052 3.948 10 H 0.109 0.891 11 C -0.159 4.159 12 C -0.076 4.076 13 N -0.238 5.238 14 C -0.084 4.084 15 C 0.228 3.772 16 O -0.462 6.462 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.103 4.103 27 C 0.044 3.956 28 H 0.090 0.910 29 O -0.368 6.368 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.234 0.766 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.046 0.954 43 H 0.130 0.870 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -24.636 -1.858 -11.217 27.133 hybrid contribution 1.143 0.721 -0.219 1.369 sum -23.493 -1.137 -11.436 26.153 Atomic orbital electron populations 1.21696 0.94659 1.02348 1.01960 1.21453 0.95590 0.95403 1.03755 1.22639 0.80504 0.98336 1.00218 1.88019 1.19541 1.25229 1.95427 1.22175 0.91746 0.86962 1.02530 1.20192 0.88543 0.84703 0.76664 1.90744 1.74510 1.26437 1.47635 1.45780 1.06691 1.08597 1.75801 1.21074 0.78575 0.98014 0.97129 0.89071 1.21921 0.95795 1.03332 0.94804 1.22290 0.93565 0.88889 1.02894 1.61503 1.09356 1.38280 1.14652 1.21838 0.87542 1.01587 0.97465 1.19693 0.83482 0.84607 0.89392 1.90485 1.49512 1.55265 1.50907 1.41851 1.05222 1.64098 1.08745 1.19649 0.92185 1.47518 0.83602 0.87932 1.25255 0.95404 0.97278 0.99913 1.69603 1.01092 1.50402 1.33180 0.85920 0.77145 0.79076 0.82084 1.19912 1.20988 1.19907 1.22750 0.95113 1.01830 0.90581 1.22016 0.93190 0.97760 0.82680 0.90979 1.86549 1.74602 1.50726 1.24967 0.92557 0.91928 0.92505 0.90956 0.90893 0.93126 0.93200 0.90255 0.90331 0.76606 0.90438 0.90344 0.95429 0.87045 0.93253 0.89268 0.77488 0.91814 0.94033 0.90085 0.77341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.89 6.30 -26.73 -0.17 -1.06 16 3 C 0.06 0.45 5.94 37.16 0.22 0.67 16 4 O -0.36 -4.16 9.88 -55.14 -0.54 -4.70 16 5 C 0.05 0.41 6.42 36.00 0.23 0.64 16 6 C 0.51 6.44 7.88 -10.99 -0.09 6.35 16 7 O -0.52 -9.03 16.16 -14.35 -0.23 -9.27 16 8 N -0.72 -7.54 4.99 -53.69 -0.27 -7.81 16 9 C 0.16 1.96 2.20 -67.80 -0.15 1.81 16 10 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 11 C -0.12 -1.69 5.67 -26.65 -0.15 -1.84 16 12 C 0.05 0.85 5.11 -3.83 -0.02 0.83 16 13 N -0.51 -8.11 4.40 -236.13 -1.04 -9.15 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 15 C 0.44 10.18 7.46 -10.99 -0.08 10.09 16 16 O -0.58 -15.08 13.90 5.55 0.08 -15.00 16 17 N -0.56 -14.00 5.29 -10.97 -0.06 -14.06 16 18 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 22 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.03 0.32 5.08 -3.84 -0.02 0.30 16 27 C 0.10 1.11 3.14 -26.66 -0.08 1.02 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 O -0.56 -5.35 13.23 -35.23 -0.47 -5.82 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.40 2.98 8.61 -40.82 -0.35 2.63 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.11 2.21 5.78 -51.93 -0.30 1.91 16 44 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 45 H 0.09 1.36 7.99 -51.93 -0.41 0.95 16 46 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 50 H 0.38 2.01 9.08 45.56 0.41 2.43 16 LS Contribution 410.03 15.07 6.18 6.18 Total: -1.00 -35.26 410.03 -8.49 -43.75 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -7.64 Total: 12.21 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -0.21 Total: 11.35 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.64 Total: -54.59 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.17 Total: -34.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.26 -8.49 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099731810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.390 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds