Wall clock time and date at job start Wed Apr 1 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 O 1.42907 * 109.46670 * 180.02562 * 3 2 1 5 5 C 1.42902 * 113.99609 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47125 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99807 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00255 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00159 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.57381 * 34.83987 * 9 8 6 11 11 C 1.53120 * 109.52015 * 274.67840 * 9 8 6 12 12 C 1.53036 * 109.27615 * 182.43609 * 11 9 8 13 13 N 1.46856 * 109.52038 * 59.18242 * 12 11 9 14 14 C 1.46897 * 110.99685 * 174.15425 * 13 12 11 15 15 C 1.50694 * 109.47717 * 294.21022 * 14 13 12 16 16 O 1.21294 * 119.99832 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00324 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99881 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00357 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99737 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00184 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47401 * 60.00085 * 22 20 18 24 24 H 1.48509 * 109.47111 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47266 * 299.99668 * 22 20 18 26 26 C 1.46846 * 111.19881 * 298.25730 * 13 12 11 27 27 C 1.53033 * 109.52164 * 61.73890 * 26 13 12 28 28 H 1.09001 * 109.50753 * 60.80574 * 27 26 13 29 29 O 1.42903 * 109.50133 * 180.87698 * 27 26 13 30 30 H 1.09000 * 109.46953 * 60.00143 * 1 2 3 31 31 H 1.09002 * 109.47456 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47520 * 300.00279 * 1 2 3 33 33 H 1.09002 * 109.46948 * 239.99302 * 2 1 3 34 34 H 1.09000 * 109.46953 * 119.99856 * 2 1 3 35 35 H 1.08996 * 109.47319 * 60.00299 * 3 2 1 36 36 H 1.09000 * 109.47137 * 299.99744 * 3 2 1 37 37 H 1.08998 * 109.47685 * 59.99331 * 5 4 3 38 38 H 1.09004 * 109.46692 * 299.99579 * 5 4 3 39 39 H 0.97003 * 120.00258 * 359.97438 * 8 6 5 40 40 H 1.09004 * 109.50336 * 62.49960 * 11 9 8 41 41 H 1.08996 * 109.53445 * 302.40476 * 11 9 8 42 42 H 1.08993 * 109.46807 * 299.16816 * 12 11 9 43 43 H 1.08999 * 109.46287 * 179.19324 * 12 11 9 44 44 H 1.08996 * 109.46986 * 54.21673 * 14 13 12 45 45 H 1.09001 * 109.46628 * 174.21176 * 14 13 12 46 46 H 0.96991 * 119.99263 * 359.97438 * 17 15 14 47 47 H 0.97000 * 120.00052 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.45879 * 301.72618 * 26 13 12 49 49 H 1.08991 * 109.46207 * 181.75781 * 26 13 12 50 50 H 0.96700 * 114.00311 * 300.00583 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0502 2.7479 -0.0001 6 6 5.5525 2.6289 -0.0014 7 8 6.0741 1.5339 -0.0022 8 7 6.3165 3.7391 -0.0007 9 6 7.7770 3.6234 -0.0014 10 1 8.0742 2.7549 -0.5891 11 6 8.2783 3.4643 1.4366 12 6 9.8075 3.4051 1.4349 13 7 10.3457 4.6368 0.8433 14 6 11.8102 4.6761 0.9508 15 6 12.2052 4.7667 2.4022 16 8 11.3508 4.7952 3.2626 17 7 13.5080 4.8161 2.7442 18 6 13.8673 4.8980 4.0647 19 1 13.1065 4.9233 4.8308 20 6 15.2103 4.9483 4.4173 21 7 16.1361 4.9170 3.4852 22 14 15.7000 5.0592 6.2166 23 1 15.1823 3.8729 6.9446 24 1 17.1806 5.0998 6.3251 25 1 15.1267 6.2936 6.8105 26 6 9.9161 4.7871 -0.5528 27 6 8.3901 4.8874 -0.6104 28 1 8.0612 5.7602 -0.0463 29 8 7.9712 5.0131 -1.9708 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7290 3.2884 0.8903 38 1 3.7282 3.2892 -0.8897 39 1 5.8994 4.6149 0.0004 40 1 7.8790 2.5433 1.8614 41 1 7.9476 4.3139 2.0340 42 1 10.1371 2.5469 0.8493 43 1 10.1683 3.3062 2.4586 44 1 12.2309 3.7697 0.5156 45 1 12.1904 5.5464 0.4158 46 1 14.1912 4.7929 2.0562 47 1 17.0737 4.9525 3.7314 48 1 10.2451 3.9224 -1.1291 49 1 10.3556 5.6917 -0.9727 50 1 8.3254 5.7922 -2.4210 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099731810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:53 Heat of formation + Delta-G solvation = -196.349591 kcal Electronic energy + Delta-G solvation = -30038.400733 eV Core-core repulsion = 25678.353633 eV Total energy + Delta-G solvation = -4360.047100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39225 -40.47722 -39.52933 -38.62400 -37.14579 -35.97310 -35.71515 -34.59158 -33.33861 -32.77452 -30.73766 -29.70289 -28.27027 -26.67155 -26.09648 -24.29075 -23.78391 -22.50699 -21.64062 -21.15268 -20.97910 -19.87118 -18.40087 -18.26499 -18.07153 -17.69396 -17.48891 -16.98169 -16.61617 -16.43363 -16.29262 -16.02473 -15.74658 -15.56860 -15.33807 -15.17075 -14.75167 -14.68617 -14.40890 -14.10357 -13.93898 -13.73124 -13.47428 -13.26761 -13.07301 -13.03710 -12.91512 -12.88571 -12.59553 -12.52356 -12.40837 -12.16126 -12.09293 -11.84361 -11.79548 -11.59698 -11.43647 -11.12778 -10.84568 -10.68401 -10.28756 -10.12750 -9.97581 -9.30147 -8.45134 -5.93462 1.40238 1.42219 1.52740 1.54845 1.75867 2.07029 2.28053 2.60115 2.94683 3.13840 3.21674 3.37283 3.64801 3.75338 3.90900 3.96034 4.03091 4.10097 4.12285 4.20593 4.22802 4.28952 4.32177 4.39555 4.41569 4.48565 4.52298 4.56805 4.63421 4.64798 4.68468 4.76646 4.84316 4.91393 5.01861 5.16060 5.17469 5.22653 5.34606 5.39565 5.42278 5.82211 6.02134 6.09540 6.12166 6.53624 6.62247 6.87382 7.14603 7.21611 7.58352 8.14107 8.71958 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.001785 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.030296 B =15682.390453 C =16788.104063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.056 3.944 4 O -0.404 6.404 5 C 0.049 3.951 6 C 0.507 3.493 7 O -0.578 6.578 8 N -0.701 5.701 9 C 0.160 3.840 10 H 0.064 0.936 11 C -0.108 4.108 12 C 0.056 3.944 13 N -0.521 5.521 14 C 0.058 3.942 15 C 0.441 3.559 16 O -0.612 6.612 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.026 3.974 27 C 0.118 3.882 28 H 0.087 0.913 29 O -0.568 6.568 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.419 0.581 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.119 0.881 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.040 0.960 49 H 0.109 0.891 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.597 1.154 -13.517 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.323 6.323 5 C -0.030 4.030 6 C 0.294 3.706 7 O -0.457 6.457 8 N -0.354 5.354 9 C 0.055 3.945 10 H 0.083 0.917 11 C -0.147 4.147 12 C -0.073 4.073 13 N -0.247 5.247 14 C -0.073 4.073 15 C 0.228 3.772 16 O -0.498 6.498 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.102 4.102 27 C 0.058 3.942 28 H 0.105 0.895 29 O -0.376 6.376 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.256 0.744 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.128 0.872 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -26.008 0.083 -12.565 28.885 hybrid contribution 1.507 0.129 0.132 1.518 sum -24.502 0.212 -12.433 27.476 Atomic orbital electron populations 1.21663 0.92808 1.02846 1.02786 1.21495 0.97167 0.95402 1.02471 1.22829 0.78759 0.98600 1.01815 1.87976 1.21653 1.26904 1.95803 1.22306 0.88642 0.86673 1.05384 1.21003 0.90357 0.84030 0.75215 1.90719 1.75828 1.28671 1.50462 1.45626 1.05799 1.09286 1.74645 1.20841 0.79938 0.98329 0.95434 0.91735 1.21746 0.94196 1.02513 0.96246 1.22097 0.95007 0.89544 1.00619 1.61458 1.08320 1.37591 1.17369 1.21738 0.88827 1.03580 0.93199 1.20733 0.82423 0.82267 0.91742 1.90466 1.50335 1.56133 1.52895 1.41916 1.06140 1.65047 1.08035 1.19620 0.92398 1.49637 0.84564 0.90266 1.25997 0.94895 0.96388 1.03881 1.69664 1.01401 1.50359 1.34713 0.85016 0.77322 0.78880 0.77277 1.19945 1.19572 1.19631 1.22898 0.96237 1.03097 0.87993 1.21748 0.91921 0.96836 0.83655 0.89540 1.86519 1.74609 1.52344 1.24121 0.91596 0.91668 0.91738 0.92167 0.92345 0.91553 0.91365 0.87275 0.87135 0.74392 0.92046 0.90254 0.95582 0.91093 0.91822 0.86292 0.77047 0.91365 0.94172 0.87242 0.74822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.13 -1.78 6.30 30.59 0.19 -1.59 16 3 C 0.06 0.76 5.94 71.98 0.43 1.18 16 4 O -0.40 -8.93 9.88 -129.94 -1.28 -10.21 16 5 C 0.05 0.77 6.42 71.24 0.46 1.23 16 6 C 0.51 12.41 7.88 87.66 0.69 13.10 16 7 O -0.58 -20.86 16.16 16.01 0.26 -20.60 16 8 N -0.70 -13.72 4.99 -442.16 -2.21 -15.93 16 9 C 0.16 3.90 2.20 45.07 0.10 3.99 16 10 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 11 C -0.11 -3.12 5.67 30.65 0.17 -2.94 16 12 C 0.06 1.88 5.11 86.32 0.44 2.32 16 13 N -0.52 -15.95 4.40 -900.97 -3.96 -19.91 16 14 C 0.06 1.92 5.45 85.56 0.47 2.39 16 15 C 0.44 20.58 7.46 87.65 0.65 21.23 16 16 O -0.61 -33.03 13.90 -3.07 -0.04 -33.07 16 17 N -0.57 -29.11 5.29 -306.99 -1.62 -30.73 16 18 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -49.50 13.05 21.66 0.28 -49.21 16 22 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 C 0.03 0.56 5.08 86.32 0.44 1.00 16 27 C 0.12 2.23 3.14 30.64 0.10 2.32 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 O -0.57 -8.84 13.23 -148.98 -1.97 -10.81 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.42 5.04 8.61 -92.71 -0.80 4.25 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 2.98 5.78 -2.39 -0.01 2.97 16 44 H 0.06 1.97 8.12 -2.39 -0.02 1.96 16 45 H 0.12 3.30 7.99 -2.39 -0.02 3.28 16 46 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 47 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 48 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.11 1.78 8.01 -2.39 -0.02 1.76 16 50 H 0.40 2.55 9.08 -74.06 -0.67 1.87 16 Total: -1.00 -80.40 410.03 -3.62 -84.03 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -1.23 Total: 35.90 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 6.13 Total: 25.59 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -7.51 Total: -115.79 kcal Atomic # 8 Polarization: -71.65 SS G_CDS: -3.04 Total: -74.69 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -80.40 -3.62 -84.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099731810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.321 kcal (2) G-P(sol) polarization free energy of solvation -80.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds