Wall clock time and date at job start Wed Apr 1 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00299 * 2 1 4 4 C 1.52994 * 109.47240 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.46970 * 64.99931 * 4 3 2 6 6 C 1.42899 * 114.00097 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47490 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46900 * 113.61428 * 219.93557 * 13 12 11 15 15 C 1.46895 * 110.99924 * 203.46824 * 14 13 12 16 16 C 1.50700 * 109.47106 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00188 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00693 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99366 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00595 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47173 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47263 * 119.99758 * 23 21 19 26 26 H 1.48500 * 109.46973 * 239.99409 * 23 21 19 27 27 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 28 28 H 1.08999 * 109.47582 * 60.00051 * 1 2 3 29 29 H 1.09001 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47060 * 300.00083 * 1 2 3 31 31 H 1.08995 * 109.46816 * 59.99925 * 3 2 1 32 32 H 1.09002 * 109.46644 * 300.00173 * 3 2 1 33 33 H 1.08994 * 109.47548 * 305.00115 * 4 3 2 34 34 H 1.09000 * 109.47489 * 184.99433 * 4 3 2 35 35 H 1.09005 * 109.47557 * 59.99302 * 6 5 4 36 36 H 1.09006 * 109.46925 * 300.00023 * 6 5 4 37 37 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 39 39 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 40 40 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 41 41 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 42 42 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 43 43 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 44 44 H 1.00902 * 110.99925 * 79.51829 * 14 13 12 45 45 H 1.08994 * 109.47448 * 300.00310 * 15 14 13 46 46 H 1.09001 * 109.47145 * 60.00387 * 15 14 13 47 47 H 0.97006 * 119.99894 * 359.97438 * 18 16 15 48 48 H 0.97005 * 120.00057 * 179.97438 * 22 21 19 49 49 H 1.08992 * 113.61675 * 140.02412 * 27 13 12 50 50 H 1.09000 * 113.60973 * 270.92699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3821 0.4185 -1.3216 7 6 5.7214 -0.2264 -2.6407 8 8 4.8373 -0.5192 -3.4177 9 7 7.0072 -0.4768 -2.9574 10 6 7.3370 -1.1033 -4.2400 11 6 8.8535 -1.2754 -4.3486 12 6 9.2985 -2.0364 -5.6086 13 6 10.4608 -1.0344 -5.7077 14 7 10.7549 -0.6084 -7.0825 15 6 12.1402 -0.1345 -7.2018 16 6 12.4041 0.2935 -8.6225 17 8 11.5245 0.2123 -9.4537 18 7 13.6174 0.7665 -8.9694 19 6 13.8575 1.1564 -10.2617 20 1 13.0742 1.0841 -11.0018 21 6 15.1082 1.6446 -10.6193 22 7 16.0610 1.7330 -9.7186 23 14 15.4353 2.1751 -12.3803 24 1 14.2084 1.9767 -13.1930 25 1 15.8174 3.6100 -12.4021 26 1 16.5403 1.3600 -12.9457 27 6 9.5740 -0.0454 -4.9327 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9785 2.1765 0.0901 35 1 5.7354 -0.2137 -0.5070 36 1 5.8638 1.3943 -1.2593 37 1 7.7143 -0.2424 -2.3362 38 1 6.9836 -0.4712 -5.0546 39 1 6.8555 -2.0792 -4.3022 40 1 9.3036 -1.6512 -3.4298 41 1 8.5900 -1.9663 -6.4340 42 1 9.6194 -3.0591 -5.4105 43 1 11.3515 -1.3433 -5.1607 44 1 10.1033 0.0984 -7.3892 45 1 12.2934 0.7124 -6.5332 46 1 12.8240 -0.9392 -6.9315 47 1 14.3208 0.8318 -8.3046 48 1 16.9344 2.0735 -9.9683 49 1 10.1171 0.5381 -4.1894 50 1 8.9407 0.5679 -5.5737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100198060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:51 Heat of formation + Delta-G solvation = -141.072869 kcal Electronic energy + Delta-G solvation = -28296.786497 eV Core-core repulsion = 23939.136376 eV Total energy + Delta-G solvation = -4357.650121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.25045 -39.38705 -38.63332 -38.03768 -37.36656 -35.08210 -34.03851 -33.18566 -31.25246 -31.17604 -29.23696 -27.31366 -26.63272 -25.90644 -25.73340 -24.00124 -23.05674 -21.64650 -21.04426 -19.88106 -19.06838 -17.86802 -17.63968 -17.53355 -17.32632 -16.36141 -16.31848 -16.05156 -15.77223 -15.59537 -15.33653 -15.24418 -14.84236 -14.50929 -14.31470 -14.19325 -13.81178 -13.68803 -13.22080 -13.03027 -12.87279 -12.60182 -12.53209 -12.45014 -12.33381 -11.89703 -11.78662 -11.57390 -11.54943 -11.51126 -11.09269 -11.03101 -10.67482 -10.47312 -10.33736 -10.22122 -10.21526 -10.14008 -9.98859 -9.51599 -9.34175 -8.43741 -8.00570 -7.94098 -6.41557 -3.82185 2.33629 2.43288 3.16740 3.27356 3.29275 3.34923 3.51805 3.91612 4.10245 4.28734 4.30132 4.38055 4.46390 4.55736 4.63039 4.65063 4.71308 4.73030 4.81531 4.86956 4.87783 4.94774 4.98880 4.99935 5.19341 5.19936 5.27112 5.27372 5.28581 5.47735 5.61608 5.68003 5.71208 5.80819 5.87873 5.99142 6.02508 6.15180 6.22204 6.34386 6.51955 6.70720 7.17157 7.28848 7.55877 7.68385 7.93924 8.07293 8.61850 9.18609 9.54951 10.06519 10.76323 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.001237 C = 0.001222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.571921 B =22636.319212 C =22901.601485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.044 3.956 7 C 0.511 3.489 8 O -0.516 6.516 9 N -0.728 5.728 10 C 0.132 3.868 11 C -0.124 4.124 12 C -0.116 4.116 13 C 0.069 3.931 14 N -0.658 5.658 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.166 4.166 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.352 0.648 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.066 0.934 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.476 -1.491 26.669 33.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.273 6.273 6 C -0.036 4.036 7 C 0.295 3.705 8 O -0.391 6.391 9 N -0.382 5.382 10 C 0.009 3.991 11 C -0.144 4.144 12 C -0.155 4.155 13 C -0.043 4.043 14 N -0.289 5.289 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.205 4.205 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.172 0.828 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.403 -2.544 25.098 33.083 hybrid contribution 1.102 1.686 0.652 2.117 sum -20.301 -0.858 25.750 32.801 Atomic orbital electron populations 1.22757 0.80893 1.03001 0.99894 1.87970 1.19757 1.27123 1.95375 1.22541 0.92044 0.85745 1.01076 1.22612 0.93852 0.97617 0.87442 1.88097 1.19309 1.82059 1.37835 1.22197 0.84414 1.00853 0.96159 1.20230 0.82822 0.79283 0.88133 1.90763 1.46876 1.50535 1.50890 1.45899 1.07294 1.63860 1.21142 1.21410 0.94598 0.98239 0.84818 1.22715 0.93512 0.98789 0.99346 1.23051 0.97987 0.98394 0.96100 1.22993 0.96702 0.95777 0.88784 1.60004 1.03432 1.45624 1.19801 1.21706 0.91137 0.99106 0.96276 1.19858 0.84022 0.84137 0.89449 1.90528 1.45008 1.59245 1.51940 1.41873 1.10874 1.56028 1.11333 1.19764 0.97898 1.38549 0.86624 0.87874 1.25250 0.95279 0.97549 0.99833 1.69618 1.03941 1.46754 1.34084 0.85808 0.78557 0.78049 0.81992 1.19191 1.20787 1.20737 1.23907 0.99453 0.96673 1.00490 0.93866 0.89489 0.94199 0.91614 0.92137 0.92123 0.91431 0.90219 0.90256 0.76598 0.91020 0.91192 0.88662 0.89096 0.91026 0.88592 0.82775 0.93897 0.89653 0.77489 0.91951 0.91531 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.59 10.67 -40.08 -0.43 -4.02 16 3 C 0.06 0.41 6.32 37.15 0.23 0.65 16 4 C 0.06 0.39 6.32 37.15 0.23 0.62 16 5 O -0.35 -3.64 9.84 -59.73 -0.59 -4.23 16 6 C 0.04 0.31 6.42 36.00 0.23 0.54 16 7 C 0.51 5.32 7.91 -10.99 -0.09 5.23 16 8 O -0.52 -8.12 16.50 -14.36 -0.24 -8.35 16 9 N -0.73 -5.54 5.56 -60.29 -0.33 -5.87 16 10 C 0.13 1.18 5.51 -4.04 -0.02 1.16 16 11 C -0.12 -0.96 3.76 -89.67 -0.34 -1.30 16 12 C -0.12 -1.15 7.44 -25.92 -0.19 -1.34 16 13 C 0.07 0.77 4.16 -66.90 -0.28 0.49 16 14 N -0.66 -10.35 6.24 -107.13 -0.67 -11.02 16 15 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 16 C 0.44 10.40 7.82 -10.99 -0.09 10.32 16 17 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 18 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.17 -1.51 7.27 -25.77 -0.19 -1.70 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.17 8.14 -51.92 -0.42 -0.26 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 1.76 8.47 -40.82 -0.35 1.42 16 38 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.00 7.88 -51.93 -0.41 0.60 16 44 H 0.35 5.79 7.91 -39.29 -0.31 5.48 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.37 8.13 -51.93 -0.42 0.94 16 47 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.88 7.59 -51.93 -0.39 0.48 16 LS Contribution 422.21 15.07 6.36 6.36 Total: -1.00 -37.22 422.21 -8.27 -45.49 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.46 Total: 10.83 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 0.35 Total: 8.80 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.34 Total: -55.07 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -1.16 Total: -32.48 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -37.22 -8.27 -45.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100198060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.584 kcal (2) G-P(sol) polarization free energy of solvation -37.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds