Wall clock time and date at job start Wed Apr 1 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00299 * 2 1 4 4 C 1.52994 * 109.47240 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.46970 * 64.99931 * 4 3 2 6 6 C 1.42899 * 114.00097 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47490 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46900 * 113.61428 * 219.93557 * 13 12 11 15 15 C 1.46895 * 110.99924 * 203.46824 * 14 13 12 16 16 C 1.50700 * 109.47106 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00188 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00693 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99366 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00595 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47173 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47263 * 119.99758 * 23 21 19 26 26 H 1.48500 * 109.46973 * 239.99409 * 23 21 19 27 27 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 28 28 H 1.08999 * 109.47582 * 60.00051 * 1 2 3 29 29 H 1.09001 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47060 * 300.00083 * 1 2 3 31 31 H 1.08995 * 109.46816 * 59.99925 * 3 2 1 32 32 H 1.09002 * 109.46644 * 300.00173 * 3 2 1 33 33 H 1.08994 * 109.47548 * 305.00115 * 4 3 2 34 34 H 1.09000 * 109.47489 * 184.99433 * 4 3 2 35 35 H 1.09005 * 109.47557 * 59.99302 * 6 5 4 36 36 H 1.09006 * 109.46925 * 300.00023 * 6 5 4 37 37 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 39 39 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 40 40 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 41 41 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 42 42 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 43 43 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 44 44 H 1.00902 * 110.99925 * 79.51829 * 14 13 12 45 45 H 1.08994 * 109.47448 * 300.00310 * 15 14 13 46 46 H 1.09001 * 109.47145 * 60.00387 * 15 14 13 47 47 H 0.97006 * 119.99894 * 359.97438 * 18 16 15 48 48 H 0.97005 * 120.00057 * 179.97438 * 22 21 19 49 49 H 1.08992 * 113.61675 * 140.02412 * 27 13 12 50 50 H 1.09000 * 113.60973 * 270.92699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3821 0.4185 -1.3216 7 6 5.7214 -0.2264 -2.6407 8 8 4.8373 -0.5192 -3.4177 9 7 7.0072 -0.4768 -2.9574 10 6 7.3370 -1.1033 -4.2400 11 6 8.8535 -1.2754 -4.3486 12 6 9.2985 -2.0364 -5.6086 13 6 10.4608 -1.0344 -5.7077 14 7 10.7549 -0.6084 -7.0825 15 6 12.1402 -0.1345 -7.2018 16 6 12.4041 0.2935 -8.6225 17 8 11.5245 0.2123 -9.4537 18 7 13.6174 0.7665 -8.9694 19 6 13.8575 1.1564 -10.2617 20 1 13.0742 1.0841 -11.0018 21 6 15.1082 1.6446 -10.6193 22 7 16.0610 1.7330 -9.7186 23 14 15.4353 2.1751 -12.3803 24 1 14.2084 1.9767 -13.1930 25 1 15.8174 3.6100 -12.4021 26 1 16.5403 1.3600 -12.9457 27 6 9.5740 -0.0454 -4.9327 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9785 2.1765 0.0901 35 1 5.7354 -0.2137 -0.5070 36 1 5.8638 1.3943 -1.2593 37 1 7.7143 -0.2424 -2.3362 38 1 6.9836 -0.4712 -5.0546 39 1 6.8555 -2.0792 -4.3022 40 1 9.3036 -1.6512 -3.4298 41 1 8.5900 -1.9663 -6.4340 42 1 9.6194 -3.0591 -5.4105 43 1 11.3515 -1.3433 -5.1607 44 1 10.1033 0.0984 -7.3892 45 1 12.2934 0.7124 -6.5332 46 1 12.8240 -0.9392 -6.9315 47 1 14.3208 0.8318 -8.3046 48 1 16.9344 2.0735 -9.9683 49 1 10.1171 0.5381 -4.1894 50 1 8.9407 0.5679 -5.5737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100198060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:50 Heat of formation + Delta-G solvation = -171.827042 kcal Electronic energy + Delta-G solvation = -28298.120098 eV Core-core repulsion = 23939.136376 eV Total energy + Delta-G solvation = -4358.983722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04145 -40.37842 -39.74995 -39.18748 -37.96936 -36.21688 -35.79383 -34.42380 -33.23519 -31.73046 -30.01329 -28.44640 -27.31915 -26.91374 -26.52574 -25.65028 -23.51524 -22.53084 -21.81293 -21.23212 -20.40155 -19.84948 -18.28118 -18.18334 -17.83244 -17.69247 -16.98723 -16.95711 -16.85733 -16.41750 -16.34154 -16.14753 -15.94722 -15.86974 -15.58012 -15.39766 -14.95055 -14.78482 -14.37273 -14.04507 -13.67336 -13.53639 -13.52206 -13.35862 -13.31757 -12.98567 -12.96138 -12.82285 -12.61757 -12.41125 -12.36877 -12.12602 -12.03506 -11.86242 -11.52714 -11.48807 -11.26543 -10.84411 -10.71812 -10.63144 -10.32382 -10.10735 -10.01193 -9.18479 -8.47007 -5.95569 1.36420 1.41920 1.55998 1.57605 1.83316 2.05767 2.29560 2.86290 2.95262 3.02689 3.20550 3.51649 3.60586 3.64727 3.82699 3.96745 4.07343 4.09104 4.21512 4.24754 4.29288 4.31728 4.36526 4.43622 4.46223 4.46922 4.53777 4.56078 4.58295 4.61842 4.73700 4.76847 4.84496 4.87898 4.90686 4.95325 5.15323 5.24013 5.37514 5.41235 5.51822 5.95320 6.04654 6.22466 6.24931 6.44295 6.57863 6.60834 7.13087 7.25282 7.56725 8.12590 8.70603 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.001237 C = 0.001222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.571921 B =22636.319212 C =22901.601485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.054 3.946 4 C 0.057 3.943 5 O -0.399 6.399 6 C 0.046 3.954 7 C 0.503 3.497 8 O -0.582 6.582 9 N -0.709 5.709 10 C 0.134 3.866 11 C -0.099 4.099 12 C -0.121 4.121 13 C 0.061 3.939 14 N -0.677 5.677 15 C 0.067 3.933 16 C 0.435 3.565 17 O -0.627 6.627 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.159 4.159 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.420 0.580 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.126 0.874 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.343 0.657 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.086 0.914 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.240 -0.918 29.380 35.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.022 4.022 4 C -0.019 4.019 5 O -0.319 6.319 6 C -0.033 4.033 7 C 0.290 3.710 8 O -0.461 6.461 9 N -0.364 5.364 10 C 0.011 3.989 11 C -0.118 4.118 12 C -0.160 4.160 13 C -0.048 4.048 14 N -0.308 5.308 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.094 0.906 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.198 4.198 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.144 0.856 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.132 0.868 44 H 0.162 0.838 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.108 -1.966 27.883 34.433 hybrid contribution 0.684 1.486 -0.166 1.644 sum -19.424 -0.480 27.717 33.849 Atomic orbital electron populations 1.22892 0.79734 1.03569 1.00825 1.87917 1.21321 1.28956 1.95599 1.22782 0.92554 0.84921 1.01932 1.22856 0.93602 0.99104 0.86348 1.88046 1.21066 1.82883 1.39861 1.22359 0.83602 1.02773 0.94591 1.21010 0.82715 0.78418 0.88870 1.90733 1.48796 1.53459 1.53108 1.45738 1.07251 1.62568 1.20798 1.21269 0.95443 0.97315 0.84921 1.22590 0.92271 0.97385 0.99528 1.23049 0.97248 0.99003 0.96693 1.23215 0.97924 0.96885 0.86825 1.60025 1.02292 1.45338 1.23118 1.21568 0.92611 1.00574 0.91801 1.21027 0.82704 0.82254 0.91791 1.90495 1.46154 1.60556 1.54128 1.41933 1.11760 1.56601 1.10692 1.19698 0.98139 1.40988 0.87664 0.90551 1.25996 0.94539 0.96821 1.03658 1.69668 1.04280 1.46510 1.35574 0.84899 0.78154 0.78248 0.77208 1.19964 1.19487 1.19547 1.23806 0.98862 0.96771 1.00332 0.93971 0.89231 0.92178 0.88734 0.93172 0.91107 0.88536 0.87222 0.86936 0.74228 0.93302 0.92281 0.85568 0.91118 0.90070 0.86810 0.83762 0.91368 0.87702 0.76896 0.91269 0.89514 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.80 10.67 -144.34 -1.54 -9.34 16 3 C 0.05 0.67 6.32 71.98 0.45 1.13 16 4 C 0.06 0.62 6.32 71.98 0.45 1.07 16 5 O -0.40 -7.89 9.84 -125.55 -1.24 -9.13 16 6 C 0.05 0.55 6.42 71.23 0.46 1.01 16 7 C 0.50 10.15 7.91 87.66 0.69 10.84 16 8 O -0.58 -19.08 16.50 16.00 0.26 -18.82 16 9 N -0.71 -9.53 5.56 -463.06 -2.57 -12.10 16 10 C 0.13 2.31 5.51 86.38 0.48 2.79 16 11 C -0.10 -1.28 3.76 -10.18 -0.04 -1.32 16 12 C -0.12 -2.24 7.44 31.12 0.23 -2.01 16 13 C 0.06 1.25 4.16 45.44 0.19 1.44 16 14 N -0.68 -20.84 6.24 -492.86 -3.07 -23.92 16 15 C 0.07 2.22 6.02 85.56 0.52 2.74 16 16 C 0.43 20.79 7.82 87.66 0.69 21.48 16 17 O -0.63 -35.42 15.78 -3.07 -0.05 -35.47 16 18 N -0.57 -29.42 5.29 -306.99 -1.62 -31.05 16 19 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 23 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 C -0.16 -2.53 7.27 31.21 0.23 -2.30 16 28 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.11 0.58 8.14 -2.38 -0.02 0.57 16 37 H 0.42 2.23 8.47 -92.71 -0.79 1.45 16 38 H 0.05 1.08 7.85 -2.39 -0.02 1.06 16 39 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.11 1.96 7.88 -2.39 -0.02 1.94 16 44 H 0.34 11.45 7.91 -89.69 -0.71 10.74 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.10 3.11 8.13 -2.39 -0.02 3.09 16 47 H 0.40 19.18 7.90 -92.70 -0.73 18.45 16 48 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 49 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.07 1.39 7.59 -2.39 -0.02 1.37 16 Total: -1.00 -85.30 422.21 -1.91 -87.21 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -1.26 Total: 36.65 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 6.87 Total: 19.93 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -6.99 Total: -116.15 kcal Atomic # 8 Polarization: -70.19 SS G_CDS: -2.56 Total: -72.75 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -85.30 -1.91 -87.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100198060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.613 kcal (2) G-P(sol) polarization free energy of solvation -85.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds