Wall clock time and date at job start Wed Apr 1 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.47152 * 2 1 4 4 C 1.42901 * 113.99945 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47400 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99727 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00023 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99686 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46924 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.50706 * 59.91461 * 9 8 7 11 11 C 1.53096 * 109.50779 * 180.02562 * 9 8 7 12 12 N 1.47013 * 109.25897 * 176.82081 * 11 9 8 13 13 C 1.46900 * 110.99867 * 177.60686 * 12 11 9 14 14 C 1.50698 * 109.46777 * 190.00269 * 13 12 11 15 15 O 1.21296 * 120.00659 * 6.28256 * 14 13 12 16 16 N 1.34785 * 119.99810 * 186.27998 * 14 13 12 17 17 C 1.37094 * 119.99826 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00330 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99844 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99790 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99892 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46915 * 89.99988 * 21 19 17 23 23 H 1.48498 * 109.46972 * 209.99665 * 21 19 17 24 24 H 1.48492 * 109.47084 * 329.99542 * 21 19 17 25 25 C 1.47010 * 110.75838 * 301.38888 * 12 11 9 26 26 C 1.53102 * 109.25505 * 58.61027 * 25 12 11 27 27 O 1.43011 * 109.26194 * 303.15276 * 26 25 12 28 28 H 1.08997 * 109.47135 * 59.99972 * 1 2 3 29 29 H 1.08996 * 109.47000 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46665 * 299.99968 * 1 2 3 31 31 H 1.09001 * 109.46966 * 239.99584 * 2 1 3 32 32 H 1.08997 * 109.46865 * 120.00507 * 2 1 3 33 33 H 1.09005 * 109.47323 * 59.99759 * 4 3 2 34 34 H 1.08996 * 109.47289 * 300.00464 * 4 3 2 35 35 H 0.96995 * 120.00386 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.46962 * 60.00437 * 8 7 5 37 37 H 1.08998 * 109.47094 * 299.99919 * 8 7 5 38 38 H 1.08998 * 109.47261 * 180.09065 * 10 9 8 39 39 H 1.09010 * 109.47195 * 300.08473 * 10 9 8 40 40 H 1.08992 * 109.47268 * 60.08768 * 10 9 8 41 41 H 1.09007 * 109.50291 * 56.89434 * 11 9 8 42 42 H 1.08996 * 109.54182 * 296.78406 * 11 9 8 43 43 H 1.09002 * 109.47024 * 310.00153 * 13 12 11 44 44 H 1.08999 * 109.46850 * 70.00382 * 13 12 11 45 45 H 0.96995 * 119.99619 * 0.02562 * 16 14 13 46 46 H 0.97003 * 119.99674 * 180.02562 * 20 19 17 47 47 H 1.08990 * 109.50642 * 178.54654 * 25 12 11 48 48 H 1.09000 * 109.50234 * 298.68267 * 25 12 11 49 49 H 1.08999 * 109.50413 * 63.09539 * 26 25 12 50 50 H 1.09006 * 109.50411 * 183.21575 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9160 -0.0012 6 8 2.9611 3.7728 -0.0016 7 7 5.1211 3.2661 -0.0023 8 6 5.4989 4.6816 -0.0034 9 6 7.0241 4.8023 -0.0052 10 6 7.5891 4.1213 -1.2534 11 6 7.4199 6.2812 -0.0058 12 7 8.8840 6.3915 0.0695 13 6 9.3096 7.7963 0.0142 14 6 10.8058 7.8616 -0.1538 15 8 11.4408 6.8441 -0.3351 16 7 11.4385 9.0506 -0.1026 17 6 12.7995 9.1100 -0.2559 18 1 13.3648 8.2041 -0.4173 19 6 13.4518 10.3358 -0.2026 20 7 12.7640 11.4380 -0.0057 21 14 15.3064 10.4166 -0.4108 22 1 15.6361 10.5843 -1.8490 23 1 15.8409 11.5697 0.3572 24 1 15.9164 9.1604 0.0938 25 6 9.3944 5.7335 1.2810 26 6 8.9788 4.2600 1.2686 27 8 7.5552 4.1723 1.1637 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8334 0.9766 -0.8908 34 1 3.8341 0.9763 0.8891 35 1 5.8077 2.5809 -0.0031 36 1 5.0968 5.1656 0.8866 37 1 5.0955 5.1645 -0.8934 38 1 8.6757 4.2063 -1.2533 39 1 7.3070 3.0684 -1.2520 40 1 7.1870 4.6040 -2.1441 41 1 6.9728 6.7779 0.8555 42 1 7.0659 6.7530 -0.9223 43 1 8.8274 8.2892 -0.8300 44 1 9.0256 8.2986 0.9389 45 1 10.9308 9.8642 0.0428 46 1 13.2193 12.2938 0.0312 47 1 10.4818 5.8048 1.3032 48 1 8.9788 6.2214 2.1626 49 1 9.4382 3.7595 0.4162 50 1 9.3060 3.7818 2.1918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107713524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:48 Heat of formation + Delta-G solvation = -178.055300 kcal Electronic energy + Delta-G solvation = -30319.234555 eV Core-core repulsion = 25959.980755 eV Total energy + Delta-G solvation = -4359.253800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50760 -40.65080 -39.87575 -38.60021 -36.85918 -36.00243 -35.74265 -33.43819 -33.27175 -32.34856 -30.61054 -29.32360 -28.82100 -27.12277 -26.41858 -25.13544 -23.67111 -23.27983 -21.64201 -21.00623 -20.34102 -19.87936 -18.46989 -18.14629 -17.81341 -17.46531 -17.25691 -16.91871 -16.62455 -16.52152 -16.43477 -15.96851 -15.80431 -15.67945 -15.41601 -15.22088 -14.73996 -14.71093 -14.35690 -14.01727 -13.94361 -13.81792 -13.48870 -13.47689 -13.22651 -13.06898 -12.95179 -12.83701 -12.58553 -12.41319 -12.29717 -12.23542 -12.21799 -12.15418 -12.12332 -11.49782 -11.36295 -10.91381 -10.73984 -10.64926 -10.22807 -10.13814 -9.99614 -9.29681 -8.46233 -5.94777 1.38073 1.42049 1.54341 1.56985 1.78321 2.05462 2.27664 2.57231 2.67936 3.06833 3.20820 3.34622 3.68066 3.72138 3.82898 3.88647 4.02723 4.16510 4.18078 4.20850 4.28693 4.33044 4.37517 4.40061 4.46212 4.50358 4.52769 4.54661 4.61639 4.63432 4.68893 4.84052 4.85785 4.91377 4.95164 5.04594 5.06606 5.28133 5.33031 5.41158 5.41395 5.78238 5.97718 6.06304 6.11490 6.17056 6.53725 6.60587 7.13312 7.20868 7.56876 8.12036 8.71140 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.042760 B = 0.001659 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.665559 B =16872.541673 C =17154.949549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.046 3.954 5 C 0.509 3.491 6 O -0.577 6.577 7 N -0.706 5.706 8 C 0.144 3.856 9 C 0.116 3.884 10 C -0.165 4.165 11 C 0.029 3.971 12 N -0.519 5.519 13 C 0.056 3.944 14 C 0.443 3.557 15 O -0.611 6.611 16 N -0.575 5.575 17 C -0.331 4.331 18 H 0.081 0.919 19 C -0.013 4.013 20 N -0.921 5.921 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.272 1.272 25 C 0.017 3.983 26 C 0.074 3.926 27 O -0.378 6.378 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.417 0.583 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.063 0.937 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.073 0.927 48 H 0.034 0.966 49 H 0.063 0.937 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.634 -21.018 0.624 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.323 6.323 4 C -0.033 4.033 5 C 0.296 3.704 6 O -0.456 6.456 7 N -0.360 5.360 8 C 0.020 3.980 9 C 0.076 3.924 10 C -0.222 4.222 11 C -0.099 4.099 12 N -0.244 5.244 13 C -0.075 4.075 14 C 0.231 3.769 15 O -0.497 6.497 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.099 0.901 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.111 4.111 26 C -0.002 4.002 27 O -0.298 6.298 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.081 0.919 45 H 0.228 0.772 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.805 -21.067 0.252 28.240 hybrid contribution 1.182 1.193 0.592 1.781 sum -17.622 -19.874 0.844 26.575 Atomic orbital electron populations 1.21785 0.93469 1.03423 1.02362 1.22769 0.96074 0.82004 1.01794 1.87980 1.19830 1.28734 1.95802 1.22308 0.83393 0.92252 1.05331 1.20889 0.82284 0.91770 0.75482 1.90719 1.50823 1.53470 1.50584 1.45635 1.06919 1.08691 1.74762 1.21188 0.91087 0.82786 1.02953 1.21664 0.92326 0.91473 0.86945 1.22240 1.02300 1.01097 0.96594 1.22781 0.87142 0.96911 1.03056 1.61737 1.10075 1.13486 1.39094 1.21763 0.92264 0.90347 1.03105 1.20651 0.90384 0.83422 0.82475 1.90470 1.68819 1.35207 1.55207 1.41945 1.07554 1.07831 1.63886 1.19661 0.83593 0.94493 1.48352 0.90144 1.26021 1.04713 0.94091 0.96407 1.69677 1.38193 0.98724 1.49644 0.84938 0.76994 0.77950 0.78534 1.19703 1.19734 1.19674 1.22826 1.01396 0.96700 0.90174 1.22642 0.80528 0.93760 1.03294 1.87975 1.21347 1.77276 1.43158 0.92763 0.88629 0.92860 0.91423 0.91576 0.87179 0.87533 0.74495 0.91825 0.89261 0.92135 0.90576 0.90781 0.93578 0.87976 0.86933 0.91895 0.77150 0.91380 0.90872 0.94733 0.91870 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.54 6.66 71.98 0.48 1.02 16 3 O -0.40 -7.76 9.88 -129.94 -1.28 -9.04 16 4 C 0.05 0.60 6.42 71.23 0.46 1.06 16 5 C 0.51 10.41 7.91 87.66 0.69 11.11 16 6 O -0.58 -17.98 16.50 15.99 0.26 -17.72 16 7 N -0.71 -11.34 5.15 -463.05 -2.39 -13.73 16 8 C 0.14 2.72 4.82 86.38 0.42 3.14 16 9 C 0.12 2.31 0.76 -10.76 -0.01 2.30 16 10 C -0.16 -3.06 8.00 71.98 0.58 -2.49 16 11 C 0.03 0.68 4.34 86.31 0.37 1.06 16 12 N -0.52 -15.76 3.79 -899.80 -3.41 -19.17 16 13 C 0.06 1.89 5.45 85.56 0.47 2.36 16 14 C 0.44 20.46 7.35 87.66 0.64 21.11 16 15 O -0.61 -32.35 14.25 -3.08 -0.04 -32.40 16 16 N -0.57 -28.98 5.29 -306.97 -1.62 -30.60 16 17 C -0.33 -18.52 9.68 84.04 0.81 -17.70 16 18 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 20 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 21 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.02 0.52 5.30 86.32 0.46 0.98 16 26 C 0.07 1.76 6.61 72.02 0.48 2.23 16 27 O -0.38 -8.29 10.04 -148.98 -1.50 -9.79 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 4.64 7.19 -92.71 -0.67 3.97 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.46 6.12 -2.39 -0.01 1.45 16 39 H 0.08 1.06 6.86 -2.38 -0.02 1.04 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.10 2.06 8.09 -2.39 -0.02 2.04 16 43 H 0.11 3.31 8.04 -2.39 -0.02 3.29 16 44 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 45 H 0.39 19.07 7.90 -92.71 -0.73 18.33 16 46 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.07 2.77 6.10 -2.39 -0.01 2.76 16 48 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 1.54 6.49 -2.39 -0.02 1.52 16 50 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -75.79 404.11 -1.06 -76.84 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.44 Total: 35.17 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 7.05 Total: 25.08 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -7.14 Total: -112.63 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: -2.56 Total: -68.94 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -75.79 -1.06 -76.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107713524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.214 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds