Wall clock time and date at job start Wed Apr 1 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.46981 * 2 1 4 4 C 1.42902 * 114.00264 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47654 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99645 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00352 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00179 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47352 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.53714 * 305.10957 * 9 8 7 11 11 C 1.53098 * 109.50547 * 185.00287 * 9 8 7 12 12 N 1.47016 * 109.25609 * 183.21660 * 11 9 8 13 13 C 1.46893 * 111.00007 * 182.39025 * 12 11 9 14 14 C 1.50708 * 109.47146 * 169.99764 * 13 12 11 15 15 O 1.21288 * 119.99815 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99719 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99349 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00515 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99490 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47194 * 300.00675 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00238 * 21 19 17 25 25 C 1.47012 * 110.75262 * 58.60891 * 12 11 9 26 26 C 1.53098 * 109.26200 * 301.38298 * 25 12 11 27 27 O 1.43010 * 109.50725 * 65.21654 * 9 8 7 28 28 H 1.08999 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47095 * 299.99658 * 1 2 3 30 30 H 1.08998 * 109.47198 * 59.99974 * 1 2 3 31 31 H 1.09003 * 109.47095 * 240.00342 * 2 1 3 32 32 H 1.09002 * 109.47874 * 119.99773 * 2 1 3 33 33 H 1.08999 * 109.46918 * 59.99439 * 4 3 2 34 34 H 1.09004 * 109.47315 * 300.00282 * 4 3 2 35 35 H 0.96996 * 119.99720 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.46952 * 60.00164 * 8 7 5 37 37 H 1.08998 * 109.47133 * 300.00468 * 8 7 5 38 38 H 1.09000 * 109.47208 * 299.88869 * 10 9 8 39 39 H 1.08991 * 109.46986 * 59.89195 * 10 9 8 40 40 H 1.09006 * 109.46515 * 179.89222 * 10 9 8 41 41 H 1.08994 * 109.50998 * 63.27965 * 11 9 8 42 42 H 1.08996 * 109.50209 * 303.14614 * 11 9 8 43 43 H 1.09002 * 109.47091 * 49.99935 * 13 12 11 44 44 H 1.09000 * 109.47343 * 289.99552 * 13 12 11 45 45 H 0.96996 * 120.00564 * 359.97438 * 16 14 13 46 46 H 0.97001 * 119.99781 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.50579 * 61.32624 * 25 12 11 48 48 H 1.09005 * 109.50522 * 181.44873 * 25 12 11 49 49 H 1.08992 * 109.50677 * 296.91755 * 26 25 12 50 50 H 1.08997 * 109.54006 * 176.80258 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9163 -0.0012 6 8 2.9610 3.7730 -0.0006 7 7 5.1209 3.2664 -0.0013 8 6 5.4986 4.6819 -0.0024 9 6 7.0238 4.8028 -0.0029 10 6 7.5997 4.0173 1.1771 11 6 7.4199 6.2764 0.1218 12 7 8.8833 6.3934 0.0432 13 6 9.3098 7.7885 0.2157 14 6 10.8075 7.8398 0.3753 15 8 11.4557 6.8150 0.3485 16 7 11.4264 9.0244 0.5488 17 6 12.7890 9.0711 0.6934 18 1 13.3662 8.1587 0.6688 19 6 13.4272 10.2925 0.8718 20 7 12.7248 11.4028 0.9013 21 14 15.2836 10.3561 1.0696 22 1 15.7148 11.7664 1.2433 23 1 15.6817 9.5656 2.2621 24 1 15.9301 9.7868 -0.1400 25 6 9.3826 5.8427 -1.2251 26 6 8.9669 4.3734 -1.3362 27 8 7.5442 4.2763 -1.2265 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.8332 0.9768 -0.8908 34 1 3.8341 0.9766 0.8891 35 1 5.8074 2.5813 -0.0013 36 1 5.0957 5.1661 0.8871 37 1 5.0959 5.1647 -0.8928 38 1 7.2058 4.4215 2.1096 39 1 7.3174 2.9684 1.0878 40 1 8.6865 4.1026 1.1746 41 1 7.0744 6.6664 1.0791 42 1 6.9652 6.8452 -0.6892 43 1 8.8352 8.2064 1.1035 44 1 9.0176 8.3686 -0.6597 45 1 10.9080 9.8439 0.5705 46 1 13.1703 12.2553 1.0261 47 1 8.9593 6.4047 -2.0576 48 1 10.4698 5.9163 -1.2509 49 1 9.4336 3.8015 -0.5343 50 1 9.2856 3.9762 -2.2998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107713525.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:52 Heat of formation + Delta-G solvation = -150.262068 kcal Electronic energy + Delta-G solvation = -30316.207259 eV Core-core repulsion = 25958.158664 eV Total energy + Delta-G solvation = -4358.048595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52169 -39.69186 -38.25837 -37.89981 -35.61696 -34.99406 -33.86302 -32.50701 -31.82692 -31.29786 -29.37339 -28.57374 -27.65818 -26.06928 -24.95931 -23.81736 -23.20740 -22.13568 -20.81367 -19.33698 -19.25144 -17.95201 -17.63105 -17.37398 -16.86837 -16.58287 -16.08228 -15.81042 -15.70188 -15.18228 -15.16807 -14.85193 -14.70668 -14.24866 -14.11983 -13.88534 -13.72012 -13.59433 -13.30129 -13.17590 -12.92000 -12.82324 -12.58983 -12.42154 -11.97169 -11.80947 -11.72335 -11.67059 -11.59277 -11.45450 -11.26306 -11.19212 -10.93570 -10.47219 -10.38318 -10.24988 -10.12477 -10.03636 -9.67029 -9.50041 -9.31189 -8.49606 -8.03528 -7.94155 -6.45157 -3.86328 2.37176 2.47822 3.17123 3.23555 3.27272 3.51888 3.63268 3.83518 3.88163 4.18777 4.41237 4.59032 4.61220 4.66153 4.70854 4.78595 4.80531 4.82111 4.91888 4.96893 5.15818 5.20913 5.24216 5.33754 5.36224 5.46063 5.48721 5.49686 5.52748 5.59896 5.72037 5.74914 5.76678 5.79316 5.85914 6.07429 6.11545 6.21414 6.27546 6.29248 6.62747 7.08439 7.11277 7.22197 7.26139 7.51409 7.97327 8.01901 8.57313 9.13953 9.50098 10.01301 10.72323 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.040655 B = 0.001661 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.560795 B =16850.343217 C =17123.093124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.045 3.955 5 C 0.512 3.488 6 O -0.522 6.522 7 N -0.719 5.719 8 C 0.139 3.861 9 C 0.110 3.890 10 C -0.170 4.170 11 C 0.031 3.969 12 N -0.508 5.508 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.580 6.580 16 N -0.562 5.562 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.284 1.284 23 H -0.273 1.273 24 H -0.274 1.274 25 C 0.014 3.986 26 C 0.065 3.935 27 O -0.379 6.379 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.404 0.596 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.032 0.968 48 H 0.114 0.886 49 H 0.065 0.935 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.000 -19.287 -2.085 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.035 4.035 5 C 0.297 3.703 6 O -0.397 6.397 7 N -0.374 5.374 8 C 0.015 3.985 9 C 0.070 3.930 10 C -0.227 4.227 11 C -0.098 4.098 12 N -0.233 5.233 13 C -0.086 4.086 14 C 0.229 3.771 15 O -0.464 6.464 16 N -0.198 5.198 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.178 4.178 20 N -0.542 5.542 21 Si 0.758 3.242 22 H -0.210 1.210 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.114 4.114 26 C -0.011 4.011 27 O -0.299 6.299 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.240 0.760 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.050 0.950 48 H 0.132 0.868 49 H 0.083 0.917 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.169 -19.328 -1.836 26.591 hybrid contribution 1.040 0.786 -0.357 1.351 sum -17.129 -18.542 -2.193 25.338 Atomic orbital electron populations 1.21733 0.93339 1.02279 1.03520 1.22559 0.96046 0.83279 1.00238 1.88026 1.18427 1.26445 1.95442 1.22167 0.84070 0.94573 1.02679 1.20217 0.82591 0.90620 0.76844 1.90743 1.49357 1.51733 1.47832 1.45783 1.06926 1.08871 1.75837 1.21297 0.91987 0.81936 1.03281 1.21668 0.92098 0.93258 0.85985 1.22290 1.03991 0.98996 0.97453 1.22659 0.89496 0.95421 1.02213 1.61776 1.08179 1.18570 1.34737 1.21877 0.96494 0.88612 1.01580 1.19674 0.88176 0.84619 0.84633 1.90469 1.66531 1.33460 1.55968 1.41858 1.08025 1.06885 1.63069 1.19644 0.82069 0.94627 1.46707 0.87942 1.25264 1.00583 0.94740 0.97240 1.69603 1.36622 0.98180 1.49774 0.85918 0.82151 0.77073 0.79076 1.20962 1.19878 1.19923 1.22964 1.04063 0.95060 0.89275 1.22705 0.80271 0.95952 1.02191 1.87980 1.22084 1.82234 1.37563 0.90934 0.91651 0.91658 0.93132 0.93133 0.90178 0.90224 0.75995 0.89706 0.90542 0.91405 0.92796 0.89733 0.89493 0.93891 0.89180 0.93288 0.77467 0.91774 0.94970 0.86787 0.91702 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.50 16 2 C 0.06 0.36 6.66 37.16 0.25 0.61 16 3 O -0.37 -3.75 9.88 -55.14 -0.54 -4.30 16 4 C 0.05 0.35 6.42 36.00 0.23 0.58 16 5 C 0.51 5.63 7.91 -10.99 -0.09 5.54 16 6 O -0.52 -8.17 16.50 -14.35 -0.24 -8.41 16 7 N -0.72 -6.58 5.19 -60.30 -0.31 -6.89 16 8 C 0.14 1.44 4.85 -4.04 -0.02 1.42 16 9 C 0.11 1.21 0.78 -90.57 -0.07 1.14 16 10 C -0.17 -1.75 7.95 37.16 0.30 -1.45 16 11 C 0.03 0.39 4.34 -3.71 -0.02 0.37 16 12 N -0.51 -7.92 3.83 -235.75 -0.90 -8.82 16 13 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 14 C 0.44 10.05 7.49 -10.98 -0.08 9.96 16 15 O -0.58 -14.82 13.93 5.55 0.08 -14.75 16 16 N -0.56 -13.86 5.29 -10.96 -0.06 -13.92 16 17 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 18 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 21 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.01 0.22 5.29 -3.71 -0.02 0.20 16 26 C 0.07 0.82 6.61 37.21 0.25 1.07 16 27 O -0.38 -4.61 10.23 -35.23 -0.36 -4.97 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 2.85 6.99 -40.82 -0.29 2.57 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.45 6.57 -51.93 -0.34 0.10 16 40 H 0.08 1.07 6.12 -51.93 -0.32 0.76 16 41 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.39 8.04 -51.93 -0.42 0.98 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 45 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.11 2.11 5.88 -51.93 -0.31 1.80 16 49 H 0.06 0.83 6.49 -51.93 -0.34 0.49 16 50 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 403.47 15.07 6.08 6.08 Total: -1.00 -33.86 403.47 -7.89 -41.75 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.17 Total: 10.10 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 0.84 Total: 11.87 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.55 Total: -53.05 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.06 Total: -32.43 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.86 -7.89 -41.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107713525.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.509 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds