Wall clock time and date at job start Wed Apr 1 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.46981 * 2 1 4 4 C 1.42902 * 114.00264 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47654 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99645 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00352 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00179 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47352 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.53714 * 305.10957 * 9 8 7 11 11 C 1.53098 * 109.50547 * 185.00287 * 9 8 7 12 12 N 1.47016 * 109.25609 * 183.21660 * 11 9 8 13 13 C 1.46893 * 111.00007 * 182.39025 * 12 11 9 14 14 C 1.50708 * 109.47146 * 169.99764 * 13 12 11 15 15 O 1.21288 * 119.99815 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99719 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99349 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00515 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99490 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47194 * 300.00675 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00238 * 21 19 17 25 25 C 1.47012 * 110.75262 * 58.60891 * 12 11 9 26 26 C 1.53098 * 109.26200 * 301.38298 * 25 12 11 27 27 O 1.43010 * 109.50725 * 65.21654 * 9 8 7 28 28 H 1.08999 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47095 * 299.99658 * 1 2 3 30 30 H 1.08998 * 109.47198 * 59.99974 * 1 2 3 31 31 H 1.09003 * 109.47095 * 240.00342 * 2 1 3 32 32 H 1.09002 * 109.47874 * 119.99773 * 2 1 3 33 33 H 1.08999 * 109.46918 * 59.99439 * 4 3 2 34 34 H 1.09004 * 109.47315 * 300.00282 * 4 3 2 35 35 H 0.96996 * 119.99720 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.46952 * 60.00164 * 8 7 5 37 37 H 1.08998 * 109.47133 * 300.00468 * 8 7 5 38 38 H 1.09000 * 109.47208 * 299.88869 * 10 9 8 39 39 H 1.08991 * 109.46986 * 59.89195 * 10 9 8 40 40 H 1.09006 * 109.46515 * 179.89222 * 10 9 8 41 41 H 1.08994 * 109.50998 * 63.27965 * 11 9 8 42 42 H 1.08996 * 109.50209 * 303.14614 * 11 9 8 43 43 H 1.09002 * 109.47091 * 49.99935 * 13 12 11 44 44 H 1.09000 * 109.47343 * 289.99552 * 13 12 11 45 45 H 0.96996 * 120.00564 * 359.97438 * 16 14 13 46 46 H 0.97001 * 119.99781 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.50579 * 61.32624 * 25 12 11 48 48 H 1.09005 * 109.50522 * 181.44873 * 25 12 11 49 49 H 1.08992 * 109.50677 * 296.91755 * 26 25 12 50 50 H 1.08997 * 109.54006 * 176.80258 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9163 -0.0012 6 8 2.9610 3.7730 -0.0006 7 7 5.1209 3.2664 -0.0013 8 6 5.4986 4.6819 -0.0024 9 6 7.0238 4.8028 -0.0029 10 6 7.5997 4.0173 1.1771 11 6 7.4199 6.2764 0.1218 12 7 8.8833 6.3934 0.0432 13 6 9.3098 7.7885 0.2157 14 6 10.8075 7.8398 0.3753 15 8 11.4557 6.8150 0.3485 16 7 11.4264 9.0244 0.5488 17 6 12.7890 9.0711 0.6934 18 1 13.3662 8.1587 0.6688 19 6 13.4272 10.2925 0.8718 20 7 12.7248 11.4028 0.9013 21 14 15.2836 10.3561 1.0696 22 1 15.7148 11.7664 1.2433 23 1 15.6817 9.5656 2.2621 24 1 15.9301 9.7868 -0.1400 25 6 9.3826 5.8427 -1.2251 26 6 8.9669 4.3734 -1.3362 27 8 7.5442 4.2763 -1.2265 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.8332 0.9768 -0.8908 34 1 3.8341 0.9766 0.8891 35 1 5.8074 2.5813 -0.0013 36 1 5.0957 5.1661 0.8871 37 1 5.0959 5.1647 -0.8928 38 1 7.2058 4.4215 2.1096 39 1 7.3174 2.9684 1.0878 40 1 8.6865 4.1026 1.1746 41 1 7.0744 6.6664 1.0791 42 1 6.9652 6.8452 -0.6892 43 1 8.8352 8.2064 1.1035 44 1 9.0176 8.3686 -0.6597 45 1 10.9080 9.8439 0.5705 46 1 13.1703 12.2553 1.0261 47 1 8.9593 6.4047 -2.0576 48 1 10.4698 5.9163 -1.2509 49 1 9.4336 3.8015 -0.5343 50 1 9.2856 3.9762 -2.2998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107713525.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:51 Heat of formation + Delta-G solvation = -176.862298 kcal Electronic energy + Delta-G solvation = -30317.360732 eV Core-core repulsion = 25958.158664 eV Total energy + Delta-G solvation = -4359.202067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51303 -40.65614 -39.87708 -38.60149 -36.86149 -36.02275 -35.73875 -33.41195 -33.27419 -32.34651 -30.60433 -29.32247 -28.82305 -27.13892 -26.42669 -25.12284 -23.67120 -23.26844 -21.63975 -21.01802 -20.33714 -19.87505 -18.47882 -18.14136 -17.82159 -17.46584 -17.24523 -16.90960 -16.62608 -16.53644 -16.43135 -15.97075 -15.81059 -15.68159 -15.42385 -15.23402 -14.74180 -14.68301 -14.35541 -14.01511 -13.94927 -13.80411 -13.49202 -13.47090 -13.22692 -13.06859 -12.93591 -12.83895 -12.57235 -12.42574 -12.29685 -12.23283 -12.21696 -12.15538 -12.12324 -11.49315 -11.35136 -10.92164 -10.74645 -10.65011 -10.19953 -10.14731 -9.99349 -9.29046 -8.45753 -5.94411 1.40023 1.42188 1.52774 1.56761 1.78345 2.05539 2.27908 2.57773 2.68763 3.06249 3.21077 3.35151 3.67741 3.72227 3.82696 3.88636 4.03783 4.17610 4.18041 4.20674 4.29238 4.32990 4.37461 4.40679 4.46294 4.49981 4.52720 4.54313 4.61723 4.63233 4.68872 4.84040 4.86530 4.92519 4.95405 5.04573 5.07692 5.28103 5.32835 5.41114 5.41478 5.79186 5.98258 6.06875 6.11334 6.18013 6.52978 6.60817 7.13407 7.20422 7.57037 8.12107 8.71327 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.040655 B = 0.001661 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.560795 B =16850.343217 C =17123.093124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.046 3.954 5 C 0.509 3.491 6 O -0.577 6.577 7 N -0.706 5.706 8 C 0.144 3.856 9 C 0.116 3.884 10 C -0.165 4.165 11 C 0.029 3.971 12 N -0.519 5.519 13 C 0.056 3.944 14 C 0.444 3.556 15 O -0.611 6.611 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.081 0.919 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.272 1.272 25 C 0.015 3.985 26 C 0.074 3.926 27 O -0.380 6.380 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.417 0.583 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.046 0.954 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.033 0.967 48 H 0.078 0.922 49 H 0.063 0.937 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.531 -20.871 -1.873 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.324 6.324 4 C -0.033 4.033 5 C 0.296 3.704 6 O -0.456 6.456 7 N -0.361 5.361 8 C 0.020 3.980 9 C 0.076 3.924 10 C -0.223 4.223 11 C -0.099 4.099 12 N -0.244 5.244 13 C -0.075 4.075 14 C 0.231 3.769 15 O -0.497 6.497 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.099 0.901 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.113 4.113 26 C -0.003 4.003 27 O -0.299 6.299 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.255 0.745 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.064 0.936 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.051 0.949 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.695 -20.941 -1.626 28.118 hybrid contribution 1.158 1.218 -0.437 1.736 sum -17.537 -19.723 -2.063 26.472 Atomic orbital electron populations 1.21784 0.93473 1.03424 1.02362 1.22771 0.96072 0.81997 1.01799 1.87982 1.19827 1.28741 1.95804 1.22311 0.83405 0.92234 1.05344 1.20892 0.82285 0.91779 0.75470 1.90718 1.50827 1.53479 1.50548 1.45683 1.06939 1.08687 1.74811 1.21165 0.91164 0.82747 1.02953 1.21662 0.92406 0.92411 0.85965 1.22241 1.02281 1.00399 0.97333 1.22784 0.87198 0.96732 1.03204 1.61745 1.10332 1.17381 1.34943 1.21756 0.92238 0.90277 1.03228 1.20642 0.90480 0.83442 0.82351 1.90450 1.68116 1.34463 1.56687 1.41930 1.07443 1.07692 1.64080 1.19629 0.83461 0.94388 1.48708 0.90114 1.26021 1.04716 0.94073 0.96401 1.69670 1.38146 0.98532 1.49862 0.85003 0.76998 0.77521 0.78908 1.19689 1.19682 1.19701 1.22877 1.01887 0.97195 0.89336 1.22642 0.80530 0.93843 1.03236 1.87986 1.21608 1.82106 1.38191 0.88627 0.92767 0.92858 0.91565 0.91418 0.87525 0.87154 0.74499 0.89241 0.91829 0.90703 0.90519 0.92097 0.87966 0.93613 0.86993 0.91831 0.77131 0.91372 0.94903 0.90335 0.91871 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.54 6.66 71.98 0.48 1.02 16 3 O -0.40 -7.76 9.88 -129.94 -1.28 -9.04 16 4 C 0.05 0.60 6.42 71.24 0.46 1.06 16 5 C 0.51 10.41 7.91 87.66 0.69 11.11 16 6 O -0.58 -18.00 16.50 16.01 0.26 -17.73 16 7 N -0.71 -11.35 5.19 -463.08 -2.41 -13.75 16 8 C 0.14 2.74 4.85 86.38 0.42 3.16 16 9 C 0.12 2.32 0.78 -10.76 -0.01 2.31 16 10 C -0.17 -3.04 7.95 71.98 0.57 -2.47 16 11 C 0.03 0.68 4.34 86.31 0.37 1.05 16 12 N -0.52 -15.78 3.83 -899.79 -3.44 -19.22 16 13 C 0.06 1.88 5.45 85.56 0.47 2.35 16 14 C 0.44 20.42 7.49 87.66 0.66 21.08 16 15 O -0.61 -32.15 13.93 -3.05 -0.04 -32.20 16 16 N -0.57 -28.90 5.29 -306.98 -1.62 -30.52 16 17 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 18 H 0.08 4.77 7.16 -2.92 -0.02 4.74 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 20 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 21 Si 0.99 42.40 29.55 68.60 2.03 44.42 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 25 C 0.02 0.46 5.29 86.31 0.46 0.92 16 26 C 0.07 1.77 6.61 72.01 0.48 2.25 16 27 O -0.38 -8.48 10.23 -148.98 -1.52 -10.00 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.42 4.58 6.99 -92.71 -0.65 3.93 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.04 6.57 -2.39 -0.02 1.02 16 40 H 0.06 1.46 6.12 -2.38 -0.01 1.45 16 41 H 0.10 2.06 8.09 -2.39 -0.02 2.04 16 42 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.11 3.29 8.04 -2.39 -0.02 3.27 16 44 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 45 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 46 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.08 3.00 5.88 -2.38 -0.01 2.98 16 49 H 0.06 1.55 6.49 -2.39 -0.02 1.53 16 50 H 0.11 2.28 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -75.55 403.47 -1.11 -76.66 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.42 Total: 35.43 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 7.06 Total: 25.03 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -7.19 Total: -112.57 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: -2.59 Total: -68.97 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -75.55 -1.11 -76.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107713525.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.203 kcal (2) G-P(sol) polarization free energy of solvation -75.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds