Wall clock time and date at job start Wed Apr 1 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42911 * 114.00061 * 2 1 4 4 C 1.50697 * 109.46871 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00173 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99603 * 180.02562 * 4 3 2 7 7 C 1.46508 * 120.00024 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.46694 * 324.99794 * 7 6 4 9 9 C 1.52998 * 109.46988 * 84.99642 * 7 6 4 10 10 C 1.50696 * 109.47130 * 205.00026 * 7 6 4 11 11 O 1.21283 * 119.99858 * 359.97438 * 10 7 6 12 12 N 1.34776 * 120.00048 * 179.97438 * 10 7 6 13 13 C 1.46499 * 120.00194 * 179.97438 * 12 10 7 14 14 C 1.52995 * 109.47173 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.51318 * 305.00252 * 14 13 12 16 16 C 1.53297 * 109.51315 * 184.90426 * 14 13 12 17 17 N 1.47149 * 108.38443 * 187.77441 * 16 14 13 18 18 C 1.36932 * 120.98300 * 230.50843 * 17 16 14 19 19 H 1.08001 * 120.00507 * 153.32347 * 18 17 16 20 20 C 1.38820 * 119.99949 * 333.32892 * 18 17 16 21 21 N 1.31614 * 120.00123 * 343.54670 * 20 18 17 22 22 Si 1.86804 * 120.00087 * 163.54443 * 20 18 17 23 23 H 1.48503 * 109.46937 * 89.99811 * 22 20 18 24 24 H 1.48494 * 109.47264 * 210.00049 * 22 20 18 25 25 H 1.48497 * 109.47222 * 330.00137 * 22 20 18 26 26 C 1.47155 * 118.03867 * 50.52942 * 17 16 14 27 27 C 1.53287 * 108.38522 * 309.46709 * 26 17 16 28 28 O 1.42957 * 109.51357 * 65.10126 * 14 13 12 29 29 H 1.08998 * 109.46746 * 300.00393 * 1 2 3 30 30 H 1.09001 * 109.46999 * 59.99856 * 1 2 3 31 31 H 1.08994 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46458 * 59.99881 * 3 2 1 33 33 H 1.08997 * 109.46904 * 300.00199 * 3 2 1 34 34 H 0.96997 * 120.00213 * 359.97438 * 6 4 3 35 35 H 1.08998 * 109.47051 * 180.02562 * 9 7 6 36 36 H 1.09005 * 109.47139 * 299.99984 * 9 7 6 37 37 H 1.08995 * 109.47297 * 60.00339 * 9 7 6 38 38 H 0.97001 * 119.99509 * 0.02562 * 12 10 7 39 39 H 1.08998 * 109.46868 * 300.00367 * 13 12 10 40 40 H 1.09004 * 109.46896 * 60.00293 * 13 12 10 41 41 H 1.09004 * 109.47351 * 59.99822 * 15 14 13 42 42 H 1.08993 * 109.47676 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.47378 * 299.99956 * 15 14 13 44 44 H 1.09004 * 109.67964 * 307.49478 * 16 14 13 45 45 H 1.08999 * 109.68504 * 68.00649 * 16 14 13 46 46 H 0.96995 * 120.00360 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.68068 * 69.18782 * 26 17 16 48 48 H 1.09000 * 109.68384 * 189.73845 * 26 17 16 49 49 H 1.08996 * 109.51538 * 172.22346 * 27 26 17 50 50 H 1.08995 * 109.51541 * 292.32907 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7370 2.1812 -0.0003 8 1 6.0327 1.3131 0.5889 9 6 6.2354 2.0160 -1.4373 10 6 6.3394 3.4249 0.6006 11 8 5.6197 4.3201 0.9901 12 7 7.6779 3.5426 0.7052 13 6 8.2636 4.7519 1.2889 14 6 9.7888 4.6311 1.2889 15 6 10.1996 3.3457 2.0100 16 6 10.3981 5.8393 2.0093 17 7 11.8584 5.7966 1.8332 18 6 12.7015 5.9128 2.9060 19 1 13.6862 5.4709 2.8694 20 6 12.2903 6.5986 4.0408 21 7 11.2497 7.4025 3.9830 22 14 13.2138 6.3806 5.6499 23 1 14.3008 7.3886 5.7372 24 1 12.2766 6.5633 6.7872 25 1 13.7982 5.0165 5.7043 26 6 12.3862 5.6257 0.4702 27 6 11.6800 4.4279 -0.1750 28 8 10.2650 4.5956 -0.0585 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8594 3.1725 0.0001 35 1 7.3220 1.9295 -1.4373 36 1 5.7997 1.1163 -1.8719 37 1 5.9397 2.8841 -2.0265 38 1 8.2535 2.8268 0.3934 39 1 7.9682 5.6197 0.6991 40 1 7.9081 4.8702 2.3125 41 1 9.7674 2.4869 1.4964 42 1 11.2861 3.2604 2.0101 43 1 9.8377 3.3741 3.0379 44 1 10.0034 6.7602 1.5798 45 1 10.1542 5.7954 3.0707 46 1 10.9626 7.8820 4.7757 47 1 12.1916 6.5250 -0.1142 48 1 13.4594 5.4400 0.5127 49 1 11.9540 4.3678 -1.2282 50 1 11.9808 3.5113 0.3323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107964207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:47 Heat of formation + Delta-G solvation = -130.259796 kcal Electronic energy + Delta-G solvation = -31057.343628 eV Core-core repulsion = 26700.162396 eV Total energy + Delta-G solvation = -4357.181231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.59620 -39.62312 -38.84856 -37.73863 -35.29698 -34.96804 -34.40219 -32.24258 -31.31554 -31.02605 -28.83141 -27.99757 -26.65288 -26.28114 -25.80170 -24.04298 -23.27124 -21.40240 -20.83422 -20.34188 -18.87121 -18.25498 -17.43331 -17.01334 -16.65777 -16.43033 -16.21488 -15.79988 -15.63722 -15.09437 -15.08580 -14.62974 -14.58868 -14.30661 -14.12038 -13.82486 -13.55372 -13.47105 -13.16449 -13.08676 -12.79626 -12.69528 -12.50131 -12.36957 -12.03679 -11.87657 -11.77713 -11.63570 -11.23961 -11.06252 -10.86518 -10.70346 -10.36562 -10.30526 -10.22250 -10.11610 -10.08401 -9.92348 -9.59894 -9.41767 -9.10451 -8.96956 -8.58078 -6.77915 -5.88956 -3.32581 2.27785 2.36455 2.54256 3.20788 3.31227 3.38797 3.39904 3.70495 4.18105 4.36041 4.39978 4.57195 4.68556 4.73218 4.82472 4.90141 4.92351 4.96418 5.07877 5.25985 5.29606 5.34343 5.41425 5.46127 5.52315 5.61678 5.86951 5.87852 5.88759 5.94405 6.00286 6.05899 6.08741 6.24215 6.38161 6.48165 6.54400 6.60548 6.70494 6.77946 7.01812 7.19445 7.40724 7.47287 7.66958 7.82342 7.91631 8.12858 8.28888 9.06593 9.69542 10.26699 11.19129 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.002122 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.317493 B =13190.397810 C =13902.057890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.517 3.483 5 O -0.520 6.520 6 N -0.711 5.711 7 C 0.127 3.873 8 H 0.115 0.885 9 C -0.159 4.159 10 C 0.508 3.492 11 O -0.542 6.542 12 N -0.709 5.709 13 C 0.139 3.861 14 C 0.078 3.922 15 C -0.163 4.163 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.384 6.384 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.411 0.589 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.404 0.596 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.030 0.970 45 H 0.096 0.904 46 H 0.256 0.744 47 H 0.026 0.974 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.709 -11.037 -10.181 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.303 3.697 5 O -0.395 6.395 6 N -0.367 5.367 7 C 0.018 3.982 8 H 0.132 0.868 9 C -0.218 4.218 10 C 0.292 3.708 11 O -0.420 6.420 12 N -0.361 5.361 13 C 0.016 3.984 14 C 0.036 3.964 15 C -0.220 4.220 16 C 0.034 3.966 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.304 6.304 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.248 0.752 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.240 0.760 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.048 0.952 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.892 -11.227 -9.893 21.828 hybrid contribution 0.566 0.434 0.949 1.187 sum -15.326 -10.793 -8.944 20.769 Atomic orbital electron populations 1.22850 0.80224 1.03381 1.00231 1.88013 1.19896 1.25121 1.95463 1.22204 0.91276 0.87087 1.03011 1.20227 0.88767 0.84330 0.76415 1.90739 1.74525 1.26399 1.47816 1.45610 1.05540 1.09728 1.75806 1.20763 0.81008 0.97650 0.98730 0.86759 1.22135 1.02124 1.03353 0.94180 1.20458 0.82989 0.88257 0.79054 1.90699 1.60439 1.41450 1.49413 1.45966 1.06007 1.21729 1.62365 1.21399 0.91017 0.86783 0.99216 1.22552 0.91537 0.98485 0.83778 1.22217 1.03416 0.95988 1.00427 1.21280 0.83476 0.91304 1.00573 1.43981 1.01141 1.85201 1.01038 1.19142 0.98173 1.28457 0.92635 0.91442 1.25052 0.98540 0.96325 0.99578 1.70000 1.27920 1.28135 1.28517 0.86297 0.79036 0.78001 0.83446 1.21316 1.21456 1.20453 1.21601 0.97121 0.95269 0.87768 1.23037 0.81591 0.98749 0.99807 1.87814 1.22233 1.94369 1.25950 0.93692 0.93737 0.89030 0.89862 0.89993 0.75220 0.90581 0.90829 0.91584 0.75992 0.90611 0.89818 0.93943 0.90680 0.91809 0.95245 0.88573 0.93409 0.95649 0.92018 0.90149 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.76 10.24 -55.14 -0.56 -4.32 16 3 C 0.04 0.35 6.42 36.00 0.23 0.58 16 4 C 0.52 5.76 7.87 -10.99 -0.09 5.67 16 5 O -0.52 -7.88 16.16 -14.35 -0.23 -8.11 16 6 N -0.71 -7.12 4.95 -54.93 -0.27 -7.40 16 7 C 0.13 1.36 2.98 -69.08 -0.21 1.15 16 8 H 0.11 1.26 7.58 -51.93 -0.39 0.87 16 9 C -0.16 -1.45 9.38 37.16 0.35 -1.10 16 10 C 0.51 6.64 7.22 -10.99 -0.08 6.56 16 11 O -0.54 -8.68 15.84 5.55 0.09 -8.59 16 12 N -0.71 -9.24 5.09 -60.30 -0.31 -9.54 16 13 C 0.14 2.23 4.85 -4.04 -0.02 2.21 16 14 C 0.08 1.37 0.78 -90.47 -0.07 1.30 16 15 C -0.16 -2.65 7.86 37.16 0.29 -2.36 16 16 C 0.16 3.61 4.11 -3.53 -0.01 3.59 16 17 N -0.59 -13.96 2.57 -171.83 -0.44 -14.40 16 18 C -0.25 -6.64 9.65 -15.06 -0.15 -6.78 16 19 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 21 N -0.90 -25.21 11.14 55.49 0.62 -24.59 16 22 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.11 2.16 6.74 -3.54 -0.02 2.14 16 27 C 0.05 0.76 6.60 37.31 0.25 1.01 16 28 O -0.38 -6.70 10.18 -35.23 -0.36 -7.06 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.41 3.63 7.79 -40.82 -0.32 3.32 16 35 H 0.08 0.62 7.57 -51.93 -0.39 0.22 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.40 4.60 6.41 -40.82 -0.26 4.34 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.04 0.57 6.58 -51.93 -0.34 0.22 16 42 H 0.07 1.35 6.12 -51.93 -0.32 1.03 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 46 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.05 0.78 6.26 -51.93 -0.33 0.45 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -33.40 401.93 -7.07 -40.47 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.13 Total: 6.29 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 1.50 Total: 15.26 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.40 Total: -55.94 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.07 Total: -28.08 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.40 -7.07 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107964207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.790 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds