Wall clock time and date at job start Wed Apr 1 2020 02:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42911 * 114.00061 * 2 1 4 4 C 1.50697 * 109.46871 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00173 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99603 * 180.02562 * 4 3 2 7 7 C 1.46508 * 120.00024 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.46694 * 324.99794 * 7 6 4 9 9 C 1.52998 * 109.46988 * 84.99642 * 7 6 4 10 10 C 1.50696 * 109.47130 * 205.00026 * 7 6 4 11 11 O 1.21283 * 119.99858 * 359.97438 * 10 7 6 12 12 N 1.34776 * 120.00048 * 179.97438 * 10 7 6 13 13 C 1.46499 * 120.00194 * 179.97438 * 12 10 7 14 14 C 1.52995 * 109.47173 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.51318 * 305.00252 * 14 13 12 16 16 C 1.53297 * 109.51315 * 184.90426 * 14 13 12 17 17 N 1.47149 * 108.38443 * 187.77441 * 16 14 13 18 18 C 1.36932 * 120.98300 * 230.50843 * 17 16 14 19 19 H 1.08001 * 120.00507 * 153.32347 * 18 17 16 20 20 C 1.38820 * 119.99949 * 333.32892 * 18 17 16 21 21 N 1.31614 * 120.00123 * 343.54670 * 20 18 17 22 22 Si 1.86804 * 120.00087 * 163.54443 * 20 18 17 23 23 H 1.48503 * 109.46937 * 89.99811 * 22 20 18 24 24 H 1.48494 * 109.47264 * 210.00049 * 22 20 18 25 25 H 1.48497 * 109.47222 * 330.00137 * 22 20 18 26 26 C 1.47155 * 118.03867 * 50.52942 * 17 16 14 27 27 C 1.53287 * 108.38522 * 309.46709 * 26 17 16 28 28 O 1.42957 * 109.51357 * 65.10126 * 14 13 12 29 29 H 1.08998 * 109.46746 * 300.00393 * 1 2 3 30 30 H 1.09001 * 109.46999 * 59.99856 * 1 2 3 31 31 H 1.08994 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46458 * 59.99881 * 3 2 1 33 33 H 1.08997 * 109.46904 * 300.00199 * 3 2 1 34 34 H 0.96997 * 120.00213 * 359.97438 * 6 4 3 35 35 H 1.08998 * 109.47051 * 180.02562 * 9 7 6 36 36 H 1.09005 * 109.47139 * 299.99984 * 9 7 6 37 37 H 1.08995 * 109.47297 * 60.00339 * 9 7 6 38 38 H 0.97001 * 119.99509 * 0.02562 * 12 10 7 39 39 H 1.08998 * 109.46868 * 300.00367 * 13 12 10 40 40 H 1.09004 * 109.46896 * 60.00293 * 13 12 10 41 41 H 1.09004 * 109.47351 * 59.99822 * 15 14 13 42 42 H 1.08993 * 109.47676 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.47378 * 299.99956 * 15 14 13 44 44 H 1.09004 * 109.67964 * 307.49478 * 16 14 13 45 45 H 1.08999 * 109.68504 * 68.00649 * 16 14 13 46 46 H 0.96995 * 120.00360 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.68068 * 69.18782 * 26 17 16 48 48 H 1.09000 * 109.68384 * 189.73845 * 26 17 16 49 49 H 1.08996 * 109.51538 * 172.22346 * 27 26 17 50 50 H 1.08995 * 109.51541 * 292.32907 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7370 2.1812 -0.0003 8 1 6.0327 1.3131 0.5889 9 6 6.2354 2.0160 -1.4373 10 6 6.3394 3.4249 0.6006 11 8 5.6197 4.3201 0.9901 12 7 7.6779 3.5426 0.7052 13 6 8.2636 4.7519 1.2889 14 6 9.7888 4.6311 1.2889 15 6 10.1996 3.3457 2.0100 16 6 10.3981 5.8393 2.0093 17 7 11.8584 5.7966 1.8332 18 6 12.7015 5.9128 2.9060 19 1 13.6862 5.4709 2.8694 20 6 12.2903 6.5986 4.0408 21 7 11.2497 7.4025 3.9830 22 14 13.2138 6.3806 5.6499 23 1 14.3008 7.3886 5.7372 24 1 12.2766 6.5633 6.7872 25 1 13.7982 5.0165 5.7043 26 6 12.3862 5.6257 0.4702 27 6 11.6800 4.4279 -0.1750 28 8 10.2650 4.5956 -0.0585 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8594 3.1725 0.0001 35 1 7.3220 1.9295 -1.4373 36 1 5.7997 1.1163 -1.8719 37 1 5.9397 2.8841 -2.0265 38 1 8.2535 2.8268 0.3934 39 1 7.9682 5.6197 0.6991 40 1 7.9081 4.8702 2.3125 41 1 9.7674 2.4869 1.4964 42 1 11.2861 3.2604 2.0101 43 1 9.8377 3.3741 3.0379 44 1 10.0034 6.7602 1.5798 45 1 10.1542 5.7954 3.0707 46 1 10.9626 7.8820 4.7757 47 1 12.1916 6.5250 -0.1142 48 1 13.4594 5.4400 0.5127 49 1 11.9540 4.3678 -1.2282 50 1 11.9808 3.5113 0.3323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107964207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:46 Heat of formation + Delta-G solvation = -155.731686 kcal Electronic energy + Delta-G solvation = -31058.448172 eV Core-core repulsion = 26700.162396 eV Total energy + Delta-G solvation = -4358.285775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60650 -40.79878 -40.08795 -38.41935 -36.61751 -36.10300 -35.93040 -33.46640 -33.19359 -32.02431 -29.58073 -29.42520 -28.09284 -27.39445 -26.80559 -25.11490 -24.89375 -22.91637 -21.79214 -21.35912 -20.33510 -19.26896 -18.89732 -18.13224 -17.53661 -17.32740 -17.25619 -17.01275 -16.82118 -16.51498 -16.09800 -15.99087 -15.61888 -15.57120 -15.43723 -15.23392 -14.95284 -14.69413 -14.38112 -14.24738 -14.04898 -13.64329 -13.40847 -13.37974 -13.17359 -13.11038 -12.92000 -12.77700 -12.65303 -12.52939 -12.41823 -12.34751 -12.17112 -11.93792 -11.84335 -11.17870 -11.04847 -10.95277 -10.76771 -10.73747 -10.48995 -10.31250 -10.16115 -8.69996 -7.89588 -5.36124 1.42203 1.45014 1.47132 1.47854 1.56467 1.59749 2.19881 2.48301 2.79899 3.10146 3.25129 3.47969 3.52824 3.72035 3.93269 4.00143 4.02744 4.08019 4.11327 4.20592 4.27528 4.43859 4.47786 4.52441 4.57401 4.58842 4.61904 4.66434 4.72757 4.77133 4.80376 4.88832 4.97386 5.05945 5.13143 5.16856 5.22376 5.23271 5.30208 5.37542 5.55028 5.62389 6.01752 6.30213 6.37683 6.40602 6.44222 7.06081 7.08103 7.11139 7.77183 8.30893 9.15951 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.002122 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.317493 B =13190.397810 C =13902.057890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.045 3.955 4 C 0.515 3.485 5 O -0.566 6.566 6 N -0.705 5.705 7 C 0.132 3.868 8 H 0.114 0.886 9 C -0.153 4.153 10 C 0.512 3.488 11 O -0.572 6.572 12 N -0.699 5.699 13 C 0.150 3.850 14 C 0.093 3.907 15 C -0.156 4.156 16 C 0.167 3.833 17 N -0.606 5.606 18 C -0.258 4.258 19 H 0.072 0.928 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.101 3.899 27 C 0.053 3.947 28 O -0.383 6.383 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.418 0.582 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.415 0.585 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.055 0.945 44 H -0.006 1.006 45 H 0.066 0.934 46 H 0.250 0.750 47 H 0.013 0.987 48 H 0.070 0.930 49 H 0.118 0.882 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.066 -12.706 -11.379 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.034 4.034 4 C 0.302 3.698 5 O -0.444 6.444 6 N -0.360 5.360 7 C 0.024 3.976 8 H 0.132 0.868 9 C -0.211 4.211 10 C 0.298 3.702 11 O -0.452 6.452 12 N -0.351 5.351 13 C 0.026 3.974 14 C 0.052 3.948 15 C -0.213 4.213 16 C 0.041 3.959 17 N -0.331 5.331 18 C -0.388 4.388 19 H 0.090 0.910 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.192 1.192 26 C -0.024 4.024 27 C -0.024 4.024 28 O -0.302 6.302 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.256 0.744 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.012 0.988 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.031 0.969 48 H 0.089 0.911 49 H 0.136 0.864 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.240 -12.909 -11.131 23.543 hybrid contribution 0.695 1.011 1.261 1.759 sum -15.545 -11.897 -9.870 21.923 Atomic orbital electron populations 1.23040 0.78238 1.04208 1.01652 1.87955 1.22159 1.26515 1.95810 1.22339 0.88763 0.86889 1.05428 1.20851 0.90191 0.83600 0.75137 1.90713 1.75557 1.27999 1.50132 1.45617 1.05303 1.09992 1.75125 1.20733 0.81438 0.95852 0.99599 0.86803 1.22100 1.02952 1.03327 0.92724 1.20838 0.82553 0.88547 0.78236 1.90692 1.61067 1.42775 1.50630 1.45761 1.06295 1.20938 1.62115 1.21050 0.90037 0.87667 0.98683 1.22188 0.92088 0.96869 0.83671 1.22135 1.02624 0.96279 1.00265 1.21056 0.83493 0.92234 0.99144 1.44232 1.01382 1.85248 1.02200 1.19483 0.98526 1.27400 0.93425 0.90997 1.25775 0.99635 0.96550 1.02508 1.70163 1.29676 1.29491 1.28798 0.85321 0.77587 0.78205 0.79610 1.21370 1.22112 1.19248 1.21824 0.98202 0.96473 0.85917 1.23096 0.80424 0.97155 1.01773 1.87828 1.22950 1.94216 1.25232 0.92444 0.92070 0.88654 0.87715 0.86993 0.74407 0.89207 0.91043 0.91277 0.74652 0.91963 0.90847 0.90321 0.92038 0.92610 0.98782 0.91565 0.94068 0.96925 0.91109 0.86433 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -7.80 10.24 -129.94 -1.33 -9.13 16 3 C 0.05 0.63 6.42 71.23 0.46 1.09 16 4 C 0.52 10.86 7.87 87.66 0.69 11.55 16 5 O -0.57 -16.89 16.16 16.01 0.26 -16.64 16 6 N -0.70 -13.11 4.95 -446.09 -2.21 -15.32 16 7 C 0.13 2.61 2.98 44.24 0.13 2.74 16 8 H 0.11 2.34 7.58 -2.38 -0.02 2.32 16 9 C -0.15 -2.44 9.38 71.98 0.68 -1.76 16 10 C 0.51 12.71 7.22 87.66 0.63 13.34 16 11 O -0.57 -17.92 15.84 -3.04 -0.05 -17.97 16 12 N -0.70 -17.06 5.09 -463.07 -2.35 -19.41 16 13 C 0.15 4.77 4.85 86.38 0.42 5.19 16 14 C 0.09 3.22 0.78 -10.70 -0.01 3.22 16 15 C -0.16 -4.81 7.86 71.98 0.57 -4.25 16 16 C 0.17 7.77 4.11 86.36 0.35 8.12 16 17 N -0.61 -28.98 2.57 -697.54 -1.79 -30.77 16 18 C -0.26 -13.56 9.65 84.04 0.81 -12.74 16 19 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 20 C -0.05 -2.66 4.95 84.86 0.42 -2.24 16 21 N -0.94 -54.18 11.14 21.65 0.24 -53.94 16 22 Si 0.96 43.66 29.58 68.60 2.03 45.69 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 C 0.10 3.94 6.74 86.35 0.58 4.52 16 27 C 0.05 1.60 6.60 72.08 0.48 2.07 16 28 O -0.38 -12.56 10.18 -148.98 -1.52 -14.08 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.42 6.73 7.79 -92.71 -0.72 6.01 16 35 H 0.09 1.19 7.57 -2.39 -0.02 1.17 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.42 8.27 6.41 -92.71 -0.59 7.68 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 2.49 8.14 -2.38 -0.02 2.48 16 41 H 0.08 1.85 6.58 -2.38 -0.02 1.83 16 42 H 0.06 2.10 6.12 -2.39 -0.01 2.08 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 45 H 0.07 3.46 6.16 -2.39 -0.01 3.45 16 46 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 49 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 50 H 0.06 1.72 6.26 -2.39 -0.01 1.71 16 Total: -1.00 -74.64 401.93 0.38 -74.26 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.36 Total: 24.97 kcal Atomic # 6 Polarization: 24.88 SS G_CDS: 7.45 Total: 32.33 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -6.11 Total: -119.44 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -2.64 Total: -57.81 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -74.64 0.38 -74.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107964207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.473 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds