Wall clock time and date at job start Wed Apr 1 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47178 * 2 1 4 4 C 1.42898 * 113.99797 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46919 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47079 * 64.99630 * 5 4 3 7 7 C 1.42899 * 113.99778 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47163 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99645 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00352 * 180.02562 * 8 7 6 11 11 C 1.47083 * 120.88068 * 359.71985 * 10 8 7 12 12 C 1.53696 * 108.27451 * 128.75374 * 11 10 8 13 13 N 1.46900 * 109.25519 * 54.08549 * 12 11 10 14 14 C 1.46901 * 110.99770 * 172.60333 * 13 12 11 15 15 C 1.50700 * 109.47368 * 294.30420 * 14 13 12 16 16 O 1.21297 * 119.99946 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00116 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00284 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99656 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00157 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00026 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47061 * 90.00213 * 22 20 18 24 24 H 1.48504 * 109.47267 * 210.00083 * 22 20 18 25 25 H 1.48504 * 109.47176 * 330.00590 * 22 20 18 26 26 C 1.46891 * 111.26978 * 296.75546 * 13 12 11 27 27 C 1.47081 * 120.88156 * 180.02562 * 10 8 7 28 28 H 1.09004 * 109.47342 * 60.00525 * 1 2 3 29 29 H 1.09006 * 109.47489 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47416 * 300.00228 * 1 2 3 31 31 H 1.08998 * 109.47416 * 239.99772 * 2 1 3 32 32 H 1.09009 * 109.47031 * 119.99807 * 2 1 3 33 33 H 1.08997 * 109.47344 * 60.00163 * 4 3 2 34 34 H 1.09005 * 109.47192 * 299.99621 * 4 3 2 35 35 H 1.09004 * 109.46930 * 304.99857 * 5 4 3 36 36 H 1.09000 * 109.47312 * 184.99800 * 5 4 3 37 37 H 1.08997 * 109.47442 * 300.00036 * 7 6 5 38 38 H 1.08997 * 109.47171 * 60.00232 * 7 6 5 39 39 H 1.08996 * 109.63006 * 248.52418 * 11 10 8 40 40 H 1.09007 * 109.62462 * 9.10488 * 11 10 8 41 41 H 1.08999 * 109.64964 * 294.07742 * 12 11 10 42 42 H 1.09002 * 109.41493 * 173.95116 * 12 11 10 43 43 H 1.08998 * 109.47215 * 54.30323 * 14 13 12 44 44 H 1.09003 * 109.46749 * 174.30113 * 14 13 12 45 45 H 0.97007 * 120.00308 * 359.97438 * 17 15 14 46 46 H 0.97003 * 119.99702 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.49053 * 303.14426 * 26 13 12 48 48 H 1.08996 * 109.49604 * 183.06856 * 26 13 12 49 49 H 1.08994 * 109.62895 * 350.89212 * 27 10 8 50 50 H 1.09000 * 109.62996 * 111.47654 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 8 3.3975 3.5451 1.2222 7 6 3.7182 4.9338 1.3248 8 6 3.2239 5.4674 2.6446 9 8 2.6535 4.7308 3.4211 10 7 3.4155 6.7632 2.9620 11 6 4.1101 7.6721 2.0375 12 6 3.2367 8.9218 1.8431 13 7 2.9162 9.4978 3.1560 14 6 2.2315 10.7894 3.0112 15 6 3.1727 11.7904 2.3922 16 8 4.3030 11.4605 2.1008 17 7 2.7590 13.0524 2.1634 18 6 3.6151 13.9630 1.5998 19 1 4.6213 13.6690 1.3396 20 6 3.1884 15.2640 1.3635 21 7 1.9640 15.6216 1.6796 22 14 4.3551 16.5048 0.5963 23 1 4.2252 16.4580 -0.8823 24 1 4.0165 17.8675 1.0799 25 1 5.7510 16.1755 0.9812 26 6 2.1191 8.5672 3.9660 27 6 2.9416 7.3042 4.2449 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8339 0.9764 -0.8891 34 1 3.8332 0.9767 0.8909 35 1 3.3498 3.4416 -0.8407 36 1 4.9082 3.0255 -0.0879 37 1 4.7987 5.0628 1.2629 38 1 3.2401 5.4782 0.5104 39 1 5.0738 7.9572 2.4592 40 1 4.2593 7.1754 1.0787 41 1 2.3142 8.6482 1.3310 42 1 3.7804 9.6548 1.2471 43 1 1.3580 10.6677 2.3706 44 1 1.9161 11.1453 3.9920 45 1 1.8552 13.3164 2.3968 46 1 1.6662 16.5300 1.5149 47 1 1.2121 8.2985 3.4243 48 1 1.8521 9.0430 4.9095 49 1 2.3180 6.5642 4.7464 50 1 3.7954 7.5547 4.8745 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113692864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:56 Heat of formation + Delta-G solvation = -143.473798 kcal Electronic energy + Delta-G solvation = -29894.925481 eV Core-core repulsion = 25537.171247 eV Total energy + Delta-G solvation = -4357.754233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.31108 -38.92582 -38.51111 -37.56900 -36.96820 -34.53581 -33.80595 -32.25786 -31.33742 -31.27627 -29.93433 -29.00577 -27.44186 -25.53985 -23.86501 -23.59685 -23.11248 -22.90029 -21.27128 -19.32916 -19.00824 -17.92921 -17.66693 -17.30071 -16.95357 -16.35083 -16.23006 -16.01669 -15.62789 -15.09704 -15.03118 -14.87791 -14.79775 -14.52890 -14.05704 -13.98737 -13.72668 -13.65699 -13.57839 -13.13864 -12.79203 -12.67204 -12.47304 -12.26416 -11.97336 -11.81357 -11.64671 -11.59782 -11.55424 -11.31740 -11.26455 -11.18622 -11.15447 -10.84940 -10.41967 -10.25346 -10.02129 -9.93720 -9.75667 -9.51267 -8.88530 -8.40533 -8.02235 -7.92431 -6.45228 -3.86300 2.51640 2.55385 3.14902 3.24219 3.29625 3.31210 3.55021 3.84880 3.91731 4.19707 4.36560 4.62049 4.70670 4.76097 4.79710 4.86201 4.90397 4.93225 4.97003 5.00786 5.04208 5.06395 5.06950 5.20506 5.20854 5.30344 5.32843 5.40340 5.42194 5.47479 5.58794 5.71799 5.77895 5.81135 5.83477 5.87790 6.10071 6.13642 6.22106 6.42079 6.73074 6.89714 7.10861 7.27236 7.34715 7.51662 8.02326 8.09157 8.57336 9.14117 9.50359 10.01386 10.72325 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.001715 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.710249 B =16320.256336 C =16739.075031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.356 6.356 7 C 0.045 3.955 8 C 0.517 3.483 9 O -0.526 6.526 10 N -0.612 5.612 11 C 0.113 3.887 12 C 0.038 3.962 13 N -0.515 5.515 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.579 6.579 17 N -0.562 5.562 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.040 3.960 27 C 0.121 3.879 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.117 0.883 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.035 0.965 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 -25.220 -2.880 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.274 6.274 7 C -0.035 4.035 8 C 0.304 3.696 9 O -0.401 6.401 10 N -0.348 5.348 11 C -0.010 4.010 12 C -0.090 4.090 13 N -0.239 5.239 14 C -0.085 4.085 15 C 0.228 3.772 16 O -0.464 6.464 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.089 4.089 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.046 0.954 42 H 0.135 0.865 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.106 0.894 49 H 0.112 0.888 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.561 -25.522 -2.289 25.630 hybrid contribution -0.493 0.824 -0.933 1.338 sum 0.069 -24.698 -3.221 24.908 Atomic orbital electron populations 1.21738 0.93676 1.02135 1.03377 1.22457 0.95819 0.83825 0.99845 1.87994 1.20365 1.26235 1.95360 1.22481 0.82426 0.95309 1.00889 1.22603 0.98471 0.92882 0.87595 1.88074 1.80797 1.20767 1.37730 1.22241 1.00534 0.84362 0.96366 1.20166 0.79708 0.81694 0.88047 1.90709 1.41546 1.56601 1.51266 1.48197 1.58121 1.08624 1.19875 1.22040 0.96606 0.89586 0.92721 1.22731 0.98559 0.96613 0.91143 1.61495 1.44392 1.02164 1.15897 1.21854 0.95249 0.89855 1.01515 1.19707 0.88880 0.83438 0.85130 1.90471 1.20467 1.78708 1.56751 1.41876 1.15035 1.08436 1.54533 1.19696 0.96840 0.89999 1.36419 0.87862 1.25266 0.96706 0.98107 0.97813 1.69613 1.16592 1.20079 1.47898 0.85858 0.80216 0.79200 0.79008 1.20443 1.20925 1.19397 1.22524 0.94487 0.93007 0.98850 1.21703 0.99152 0.94500 0.84781 0.91899 0.91175 0.91592 0.93620 0.93366 0.91718 0.92292 0.92109 0.91466 0.90203 0.90152 0.89675 0.89983 0.95359 0.86549 0.93417 0.89143 0.77470 0.91840 0.94633 0.89401 0.88791 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.15 0.38 -0.70 16 2 C 0.06 0.45 6.66 37.15 0.25 0.69 16 3 O -0.38 -4.13 10.31 -40.09 -0.41 -4.55 16 4 C 0.07 0.54 6.32 37.16 0.23 0.77 16 5 C 0.06 0.52 6.32 37.16 0.23 0.75 16 6 O -0.36 -4.46 9.84 -59.73 -0.59 -5.05 16 7 C 0.04 0.47 4.78 36.00 0.17 0.65 16 8 C 0.52 7.19 7.78 -10.99 -0.09 7.10 16 9 O -0.53 -9.36 15.95 -14.36 -0.23 -9.59 16 10 N -0.61 -7.85 3.00 -172.15 -0.52 -8.37 16 11 C 0.11 1.35 6.53 -3.36 -0.02 1.33 16 12 C 0.04 0.56 5.27 -3.46 -0.02 0.54 16 13 N -0.51 -8.08 4.37 -235.45 -1.03 -9.11 16 14 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 15 C 0.44 9.92 7.44 -10.99 -0.08 9.84 16 16 O -0.58 -14.61 13.91 5.54 0.08 -14.54 16 17 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 18 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 19 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 22 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C 0.04 0.52 5.62 -3.68 -0.02 0.50 16 27 C 0.12 1.52 6.60 -3.58 -0.02 1.50 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.63 7.99 -51.93 -0.41 0.22 16 38 H 0.08 0.71 7.67 -51.93 -0.40 0.32 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.74 6.02 -51.93 -0.31 0.43 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 2.05 5.77 -51.93 -0.30 1.75 16 43 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 44 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 45 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 46 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 1.00 7.99 -51.93 -0.41 0.58 16 49 H 0.09 1.20 7.06 -51.93 -0.37 0.84 16 50 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 408.63 15.07 6.16 6.16 Total: -1.00 -34.63 408.63 -8.52 -43.15 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -8.37 Total: 7.47 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 0.75 Total: 15.98 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.88 Total: -54.59 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.15 Total: -33.72 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.63 -8.52 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113692864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.327 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds