Wall clock time and date at job start Wed Apr 1 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99586 * 2 1 4 4 C 1.52998 * 109.46881 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47548 * 54.99777 * 4 3 2 6 6 C 1.53004 * 109.46981 * 174.99867 * 4 3 2 7 7 N 1.46502 * 109.47354 * 182.94535 * 6 4 3 8 8 C 1.34777 * 120.00184 * 181.78234 * 7 6 4 9 9 O 1.21343 * 119.99555 * 359.97438 * 8 7 6 10 10 C 1.49445 * 119.99823 * 179.97438 * 8 7 6 11 11 O 1.21348 * 120.00399 * 353.08762 * 10 8 7 12 12 N 1.34777 * 119.99889 * 173.08518 * 10 8 7 13 13 C 1.47082 * 120.88027 * 171.73046 * 12 10 8 14 14 C 1.53693 * 108.27334 * 128.75771 * 13 12 10 15 15 N 1.46898 * 109.25698 * 54.08348 * 14 13 12 16 16 C 1.46907 * 110.99769 * 172.60644 * 15 14 13 17 17 C 1.50704 * 109.47087 * 294.29878 * 16 15 14 18 18 H 1.08004 * 120.00037 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99706 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00295 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99674 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47209 * 60.00467 * 21 19 17 23 23 H 1.48500 * 109.47041 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47563 * 300.00209 * 21 19 17 25 25 C 1.46893 * 111.27009 * 296.75351 * 15 14 13 26 26 C 1.47077 * 120.88090 * 352.01472 * 12 10 8 27 27 O 1.42897 * 109.47057 * 294.99404 * 4 3 2 28 28 C 1.42905 * 113.99915 * 147.25777 * 27 4 3 29 29 H 1.09006 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47354 * 300.00190 * 1 2 3 31 31 H 1.08998 * 109.46979 * 60.01006 * 1 2 3 32 32 H 1.08995 * 109.47202 * 59.99582 * 3 2 1 33 33 H 1.09003 * 109.47123 * 299.99333 * 3 2 1 34 34 H 1.09000 * 109.47269 * 62.94289 * 6 4 3 35 35 H 1.08998 * 109.46819 * 302.94352 * 6 4 3 36 36 H 0.97000 * 119.99459 * 1.77575 * 7 6 4 37 37 H 1.08996 * 109.62740 * 248.52717 * 13 12 10 38 38 H 1.08997 * 109.63156 * 9.11011 * 13 12 10 39 39 H 1.09006 * 109.65275 * 294.07650 * 14 13 12 40 40 H 1.09002 * 109.42366 * 173.94712 * 14 13 12 41 41 H 1.08997 * 109.47448 * 54.30435 * 16 15 14 42 42 H 1.09005 * 109.46583 * 174.30266 * 16 15 14 43 43 H 0.97001 * 120.00167 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.49282 * 303.14456 * 25 15 14 45 45 H 1.09003 * 109.49426 * 183.06224 * 25 15 14 46 46 H 1.08996 * 109.62833 * 350.89272 * 26 12 10 47 47 H 1.09001 * 109.62818 * 111.47643 * 26 12 10 48 48 H 1.08999 * 109.46879 * 192.14370 * 28 27 4 49 49 H 1.08997 * 109.46797 * 312.14204 * 28 27 4 50 50 H 1.09000 * 109.47421 * 72.14030 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5683 -0.8409 6 6 4.1572 2.5771 -0.1251 7 7 5.6155 2.4561 -0.1953 8 6 6.3806 3.5629 -0.2733 9 8 5.8615 4.6596 -0.2859 10 6 7.8683 3.4394 -0.3443 11 8 8.3944 2.3548 -0.2057 12 7 8.6256 4.5328 -0.5623 13 6 10.0913 4.4691 -0.4572 14 6 10.6928 5.0686 -1.7382 15 7 10.1435 6.4149 -1.9473 16 6 10.8206 7.0925 -3.0612 17 6 12.2624 7.3379 -2.6979 18 1 12.6383 7.0218 -1.7360 19 6 13.1017 7.9661 -3.5935 20 7 12.6438 8.3515 -4.7645 21 14 14.8890 8.2697 -3.1435 22 1 15.5589 6.9721 -2.8737 23 1 15.5731 8.9559 -4.2688 24 1 14.9559 9.1230 -1.9300 25 6 8.6912 6.3703 -2.1630 26 6 8.0079 5.8227 -0.9054 27 8 3.9647 0.5799 1.2220 28 6 5.1334 -0.2317 1.0892 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6884 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8837 3.1769 0.7429 35 1 3.7887 3.0591 -1.0306 36 1 6.0304 1.5794 -0.1854 37 1 10.4215 5.0423 0.4091 38 1 10.4063 3.4307 -0.3544 39 1 10.4427 4.4372 -2.5909 40 1 11.7762 5.1297 -1.6358 41 1 10.7719 6.4656 -3.9515 42 1 10.3288 8.0447 -3.2599 43 1 13.2342 8.7937 -5.3945 44 1 8.4690 5.7208 -3.0097 45 1 8.3229 7.3754 -2.3686 46 1 6.9449 5.6797 -1.0991 47 1 8.1418 6.5236 -0.0814 48 1 5.2710 -0.8215 1.9955 49 1 5.0170 -0.8992 0.2355 50 1 6.0035 0.4065 0.9354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119161967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:49 Heat of formation + Delta-G solvation = -124.101416 kcal Electronic energy + Delta-G solvation = -30552.575847 eV Core-core repulsion = 26195.661663 eV Total energy + Delta-G solvation = -4356.914184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02473 -39.56943 -38.62956 -37.68920 -37.60328 -35.28113 -34.22871 -32.40455 -31.89418 -30.79971 -28.59137 -27.76572 -27.00002 -26.09423 -25.43053 -24.01778 -22.91076 -22.24253 -21.76750 -20.68678 -19.46486 -17.83087 -17.65292 -17.34489 -16.82257 -16.42560 -16.22767 -16.11352 -15.76330 -15.54275 -15.49851 -14.79888 -14.69136 -14.53541 -14.46008 -14.35077 -14.05091 -13.78160 -13.53937 -13.34839 -12.93648 -12.84118 -12.69040 -12.34811 -12.18818 -12.01532 -11.71723 -11.50011 -11.39372 -11.27162 -11.06892 -10.84072 -10.75753 -10.63430 -10.56297 -10.23151 -10.15213 -9.91004 -9.58076 -9.40946 -9.12640 -8.61176 -8.45882 -7.33258 -6.06005 -4.08071 1.31420 2.13842 3.07162 3.09142 3.23638 3.31870 3.36179 3.38782 3.46390 4.12514 4.34652 4.39516 4.45426 4.47715 4.79254 4.84620 4.85045 4.90528 4.94080 5.01108 5.01829 5.07824 5.21340 5.28912 5.30665 5.32994 5.39766 5.41504 5.56454 5.64998 5.76650 5.81387 5.89820 6.20471 6.26164 6.39374 6.47534 6.56658 6.59372 6.66305 6.79362 7.21672 7.26295 7.30733 7.57018 7.74016 7.89998 8.01192 8.11772 8.47575 8.98729 9.56426 11.04700 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030386 B = 0.001834 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.253168 B =15265.079649 C =15784.058684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.066 3.934 4 C 0.078 3.922 5 H 0.080 0.920 6 C 0.097 3.903 7 N -0.704 5.704 8 C 0.511 3.489 9 O -0.506 6.506 10 C 0.503 3.497 11 O -0.535 6.535 12 N -0.570 5.570 13 C 0.110 3.890 14 C 0.052 3.948 15 N -0.537 5.537 16 C 0.193 3.807 17 C -0.511 4.511 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.040 3.960 26 C 0.080 3.920 27 O -0.371 6.371 28 C 0.024 3.976 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.410 0.590 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.099 0.901 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.025 0.975 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.049 0.951 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.564 -16.044 9.603 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.011 4.011 4 C 0.020 3.980 5 H 0.098 0.902 6 C -0.026 4.026 7 N -0.361 5.361 8 C 0.293 3.707 9 O -0.382 6.382 10 C 0.285 3.715 11 O -0.413 6.413 12 N -0.303 5.303 13 C -0.011 4.011 14 C -0.077 4.077 15 N -0.262 5.262 16 C 0.069 3.931 17 C -0.549 4.549 18 H 0.082 0.918 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.090 4.090 26 C -0.041 4.041 27 O -0.290 6.290 28 C -0.073 4.073 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.250 0.750 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.117 0.883 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.102 0.898 46 H 0.146 0.854 47 H 0.095 0.905 48 H 0.109 0.891 49 H 0.068 0.932 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.489 -15.586 10.082 29.161 hybrid contribution 1.051 -0.317 -0.897 1.418 sum -21.438 -15.903 9.184 28.229 Atomic orbital electron populations 1.22772 0.80557 1.03010 1.00158 1.87899 1.19978 1.27008 1.95467 1.22488 0.91189 0.85741 1.01706 1.22361 0.93582 0.93174 0.88909 0.90180 1.21943 0.79299 0.97392 1.04005 1.45945 1.06812 1.09832 1.73471 1.20347 0.88442 0.84589 0.77338 1.90560 1.74549 1.25333 1.47773 1.19874 0.87401 0.84825 0.79381 1.90724 1.73942 1.26069 1.50558 1.48159 1.07823 1.09773 1.64516 1.22168 0.76974 1.02218 0.99774 1.22408 1.01205 0.89741 0.94343 1.62114 1.01306 1.16508 1.46257 1.19731 0.94041 0.93317 0.86058 1.21108 0.94005 1.38205 1.01625 0.91834 1.24989 0.98960 0.95673 0.94916 1.69944 1.36052 1.40451 1.07251 0.86544 0.84425 0.78430 0.77902 1.20260 1.21375 1.20136 1.22454 0.90767 1.00673 0.95071 1.22939 1.00241 0.82854 0.98100 1.87984 1.45277 1.65370 1.30340 1.23019 0.87018 0.94135 1.03106 0.89444 0.93807 0.93927 0.91722 0.91305 0.89467 0.89560 0.75048 0.90138 0.89089 0.95599 0.88254 0.99106 0.94961 0.92825 0.95718 0.89828 0.85368 0.90491 0.89075 0.93196 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.10 10.67 -40.08 -0.43 -3.53 16 3 C 0.07 0.42 5.60 37.16 0.21 0.63 16 4 C 0.08 0.57 2.68 -26.73 -0.07 0.50 16 5 H 0.08 0.53 7.56 -51.93 -0.39 0.14 16 6 C 0.10 0.77 5.35 -4.04 -0.02 0.75 16 7 N -0.70 -7.10 5.30 -60.73 -0.32 -7.42 16 8 C 0.51 6.65 7.74 -11.59 -0.09 6.56 16 9 O -0.51 -7.19 13.21 5.50 0.07 -7.12 16 10 C 0.50 7.54 7.74 -11.59 -0.09 7.45 16 11 O -0.53 -8.64 15.96 5.50 0.09 -8.55 16 12 N -0.57 -8.98 3.00 -172.70 -0.52 -9.49 16 13 C 0.11 1.77 6.65 -3.36 -0.02 1.75 16 14 C 0.05 1.00 5.47 -3.46 -0.02 0.98 16 15 N -0.54 -11.30 4.62 -235.46 -1.09 -12.39 16 16 C 0.19 4.95 4.72 -4.97 -0.02 4.92 16 17 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 18 H 0.06 1.71 7.13 -52.48 -0.37 1.33 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 21 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 26 C 0.08 1.24 6.10 -3.60 -0.02 1.22 16 27 O -0.37 -3.37 10.28 -40.08 -0.41 -3.78 16 28 C 0.02 0.17 10.41 101.05 1.05 1.22 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.41 3.86 4.97 -40.82 -0.20 3.66 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.40 7.05 -51.93 -0.37 1.03 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 1.45 7.99 -51.93 -0.41 1.03 16 46 H 0.13 1.90 4.45 -54.13 -0.24 1.66 16 47 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.31 7.78 -51.93 -0.40 -0.10 16 50 H 0.05 0.35 5.68 -51.93 -0.30 0.05 16 LS Contribution 401.54 15.07 6.05 6.05 Total: -1.00 -32.83 401.54 -7.32 -40.14 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.08 Total: 0.31 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 1.61 Total: 15.08 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -1.19 Total: -54.94 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.68 Total: -22.98 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.83 -7.32 -40.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119161967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.959 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds