Wall clock time and date at job start Wed Apr 1 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99586 * 2 1 4 4 C 1.52998 * 109.46881 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47548 * 54.99777 * 4 3 2 6 6 C 1.53004 * 109.46981 * 174.99867 * 4 3 2 7 7 N 1.46502 * 109.47354 * 182.94535 * 6 4 3 8 8 C 1.34777 * 120.00184 * 181.78234 * 7 6 4 9 9 O 1.21343 * 119.99555 * 359.97438 * 8 7 6 10 10 C 1.49445 * 119.99823 * 179.97438 * 8 7 6 11 11 O 1.21348 * 120.00399 * 353.08762 * 10 8 7 12 12 N 1.34777 * 119.99889 * 173.08518 * 10 8 7 13 13 C 1.47082 * 120.88027 * 171.73046 * 12 10 8 14 14 C 1.53693 * 108.27334 * 128.75771 * 13 12 10 15 15 N 1.46898 * 109.25698 * 54.08348 * 14 13 12 16 16 C 1.46907 * 110.99769 * 172.60644 * 15 14 13 17 17 C 1.50704 * 109.47087 * 294.29878 * 16 15 14 18 18 H 1.08004 * 120.00037 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99706 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00295 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99674 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47209 * 60.00467 * 21 19 17 23 23 H 1.48500 * 109.47041 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47563 * 300.00209 * 21 19 17 25 25 C 1.46893 * 111.27009 * 296.75351 * 15 14 13 26 26 C 1.47077 * 120.88090 * 352.01472 * 12 10 8 27 27 O 1.42897 * 109.47057 * 294.99404 * 4 3 2 28 28 C 1.42905 * 113.99915 * 147.25777 * 27 4 3 29 29 H 1.09006 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47354 * 300.00190 * 1 2 3 31 31 H 1.08998 * 109.46979 * 60.01006 * 1 2 3 32 32 H 1.08995 * 109.47202 * 59.99582 * 3 2 1 33 33 H 1.09003 * 109.47123 * 299.99333 * 3 2 1 34 34 H 1.09000 * 109.47269 * 62.94289 * 6 4 3 35 35 H 1.08998 * 109.46819 * 302.94352 * 6 4 3 36 36 H 0.97000 * 119.99459 * 1.77575 * 7 6 4 37 37 H 1.08996 * 109.62740 * 248.52717 * 13 12 10 38 38 H 1.08997 * 109.63156 * 9.11011 * 13 12 10 39 39 H 1.09006 * 109.65275 * 294.07650 * 14 13 12 40 40 H 1.09002 * 109.42366 * 173.94712 * 14 13 12 41 41 H 1.08997 * 109.47448 * 54.30435 * 16 15 14 42 42 H 1.09005 * 109.46583 * 174.30266 * 16 15 14 43 43 H 0.97001 * 120.00167 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.49282 * 303.14456 * 25 15 14 45 45 H 1.09003 * 109.49426 * 183.06224 * 25 15 14 46 46 H 1.08996 * 109.62833 * 350.89272 * 26 12 10 47 47 H 1.09001 * 109.62818 * 111.47643 * 26 12 10 48 48 H 1.08999 * 109.46879 * 192.14370 * 28 27 4 49 49 H 1.08997 * 109.46797 * 312.14204 * 28 27 4 50 50 H 1.09000 * 109.47421 * 72.14030 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5683 -0.8409 6 6 4.1572 2.5771 -0.1251 7 7 5.6155 2.4561 -0.1953 8 6 6.3806 3.5629 -0.2733 9 8 5.8615 4.6596 -0.2859 10 6 7.8683 3.4394 -0.3443 11 8 8.3944 2.3548 -0.2057 12 7 8.6256 4.5328 -0.5623 13 6 10.0913 4.4691 -0.4572 14 6 10.6928 5.0686 -1.7382 15 7 10.1435 6.4149 -1.9473 16 6 10.8206 7.0925 -3.0612 17 6 12.2624 7.3379 -2.6979 18 1 12.6383 7.0218 -1.7360 19 6 13.1017 7.9661 -3.5935 20 7 12.6438 8.3515 -4.7645 21 14 14.8890 8.2697 -3.1435 22 1 15.5589 6.9721 -2.8737 23 1 15.5731 8.9559 -4.2688 24 1 14.9559 9.1230 -1.9300 25 6 8.6912 6.3703 -2.1630 26 6 8.0079 5.8227 -0.9054 27 8 3.9647 0.5799 1.2220 28 6 5.1334 -0.2317 1.0892 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6884 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8837 3.1769 0.7429 35 1 3.7887 3.0591 -1.0306 36 1 6.0304 1.5794 -0.1854 37 1 10.4215 5.0423 0.4091 38 1 10.4063 3.4307 -0.3544 39 1 10.4427 4.4372 -2.5909 40 1 11.7762 5.1297 -1.6358 41 1 10.7719 6.4656 -3.9515 42 1 10.3288 8.0447 -3.2599 43 1 13.2342 8.7937 -5.3945 44 1 8.4690 5.7208 -3.0097 45 1 8.3229 7.3754 -2.3686 46 1 6.9449 5.6797 -1.0991 47 1 8.1418 6.5236 -0.0814 48 1 5.2710 -0.8215 1.9955 49 1 5.0170 -0.8992 0.2355 50 1 6.0035 0.4065 0.9354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119161967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:48 Heat of formation + Delta-G solvation = -150.175445 kcal Electronic energy + Delta-G solvation = -30553.706502 eV Core-core repulsion = 26195.661663 eV Total energy + Delta-G solvation = -4358.044839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12637 -40.42487 -39.57372 -39.01747 -38.23006 -36.43214 -35.53933 -34.37223 -32.52344 -32.20486 -30.25312 -28.48274 -27.68838 -27.33772 -26.41482 -25.23159 -24.26898 -23.51708 -22.81927 -21.93606 -20.70510 -18.95731 -18.46713 -18.28260 -18.24198 -17.68980 -17.24002 -16.96504 -16.66445 -16.39705 -16.32521 -16.13836 -16.08006 -15.71165 -15.67394 -15.35109 -15.29121 -14.93916 -14.88388 -14.39113 -14.11230 -14.04658 -13.60782 -13.37050 -13.17486 -13.12552 -12.80985 -12.78848 -12.63910 -12.55473 -12.35953 -12.25382 -12.22573 -12.15328 -11.94000 -11.75640 -11.36807 -10.84692 -10.65491 -10.61808 -10.40939 -10.32245 -9.94657 -9.08987 -8.20189 -6.30495 0.20802 1.12240 1.43147 1.45991 1.53704 1.97686 2.23522 2.41304 2.61872 2.80632 3.11985 3.12863 3.23267 3.72025 3.91276 3.93434 3.98790 3.99775 4.19106 4.26902 4.34867 4.37948 4.39574 4.45011 4.47456 4.48454 4.52339 4.58528 4.61976 4.68595 4.78051 4.80294 4.85401 4.90027 4.90469 4.98398 5.08399 5.14868 5.20871 5.31982 5.63159 5.81529 6.02028 6.08065 6.08741 6.19590 6.25851 6.51765 6.55550 6.77800 6.84586 7.39282 8.90697 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030386 B = 0.001834 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.253168 B =15265.079649 C =15784.058684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.064 3.936 4 C 0.080 3.920 5 H 0.087 0.913 6 C 0.097 3.903 7 N -0.690 5.690 8 C 0.514 3.486 9 O -0.519 6.519 10 C 0.503 3.497 11 O -0.546 6.546 12 N -0.579 5.579 13 C 0.122 3.878 14 C 0.055 3.945 15 N -0.540 5.540 16 C 0.208 3.792 17 C -0.525 4.525 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.039 3.961 26 C 0.095 3.905 27 O -0.391 6.391 28 C 0.021 3.979 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.414 0.586 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.014 0.986 40 H 0.086 0.914 41 H -0.040 1.040 42 H 0.009 0.991 43 H 0.264 0.736 44 H 0.018 0.982 45 H 0.087 0.913 46 H 0.142 0.858 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.060 0.940 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.259 -16.786 10.766 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.013 4.013 4 C 0.022 3.978 5 H 0.105 0.895 6 C -0.025 4.025 7 N -0.346 5.346 8 C 0.295 3.705 9 O -0.397 6.397 10 C 0.286 3.714 11 O -0.425 6.425 12 N -0.311 5.311 13 C 0.000 4.000 14 C -0.074 4.074 15 N -0.265 5.265 16 C 0.082 3.918 17 C -0.563 4.563 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.090 4.090 26 C -0.027 4.027 27 O -0.310 6.310 28 C -0.076 4.076 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.254 0.746 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.032 0.968 40 H 0.105 0.895 41 H -0.022 1.022 42 H 0.027 0.973 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.105 0.895 46 H 0.159 0.841 47 H 0.101 0.899 48 H 0.116 0.884 49 H 0.078 0.922 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -23.221 -16.371 11.268 30.565 hybrid contribution 1.167 -0.170 -1.265 1.730 sum -22.054 -16.540 10.003 29.326 Atomic orbital electron populations 1.22927 0.79216 1.03808 1.01031 1.87850 1.21561 1.27966 1.95675 1.22572 0.90411 0.85467 1.02825 1.22424 0.94263 0.92591 0.88571 0.89518 1.22108 0.77659 0.98089 1.04684 1.45968 1.07721 1.09204 1.71710 1.19944 0.87522 0.85124 0.77889 1.90542 1.74304 1.25842 1.49032 1.20237 0.88398 0.84221 0.78536 1.90716 1.74504 1.26421 1.50879 1.48199 1.07689 1.10163 1.65035 1.22008 0.77386 1.02583 0.98067 1.22372 1.00718 0.88612 0.95657 1.62044 1.02927 1.17540 1.43941 1.19390 0.93957 0.92100 0.86400 1.21438 0.94971 1.38092 1.01817 0.91440 1.25913 1.03688 0.95289 0.94711 1.70078 1.37757 1.41249 1.08370 0.85422 0.78688 0.78672 0.77744 1.19192 1.21098 1.19266 1.22548 0.88893 1.01094 0.96464 1.22856 1.00357 0.82752 0.96711 1.87963 1.45805 1.65728 1.31486 1.23100 0.86318 0.94130 1.04006 0.88803 0.93293 0.92668 0.91604 0.89168 0.89667 0.87992 0.74568 0.89106 0.88097 0.96809 0.89548 1.02233 0.97291 0.92721 0.96353 0.89498 0.84106 0.89939 0.88404 0.92151 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.01 10.67 -144.34 -1.54 -7.55 16 3 C 0.06 0.70 5.60 71.98 0.40 1.10 16 4 C 0.08 1.01 2.68 30.60 0.08 1.09 16 5 H 0.09 0.98 7.56 -2.39 -0.02 0.96 16 6 C 0.10 1.34 5.35 86.38 0.46 1.80 16 7 N -0.69 -12.67 5.30 -464.41 -2.46 -15.13 16 8 C 0.51 12.47 7.74 87.27 0.68 13.14 16 9 O -0.52 -13.76 13.21 -3.23 -0.04 -13.80 16 10 C 0.50 14.33 7.74 87.27 0.68 15.00 16 11 O -0.55 -16.86 15.96 -3.24 -0.05 -16.91 16 12 N -0.58 -17.46 3.00 -818.65 -2.46 -19.92 16 13 C 0.12 3.78 6.65 86.50 0.57 4.35 16 14 C 0.06 2.13 5.47 86.54 0.47 2.60 16 15 N -0.54 -23.02 4.62 -898.86 -4.15 -27.17 16 16 C 0.21 10.99 4.72 85.56 0.40 11.39 16 17 C -0.53 -29.24 8.41 25.60 0.22 -29.03 16 18 H 0.07 3.63 7.13 -2.91 -0.02 3.61 16 19 C 0.00 0.12 5.46 84.66 0.46 0.58 16 20 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 21 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.04 1.39 5.62 86.39 0.49 1.88 16 26 C 0.09 2.81 6.10 86.35 0.53 3.33 16 27 O -0.39 -6.56 10.28 -144.34 -1.48 -8.04 16 28 C 0.02 0.27 10.41 113.37 1.18 1.45 16 29 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.41 7.11 4.97 -92.71 -0.46 6.65 16 37 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.10 2.96 7.05 -2.39 -0.02 2.94 16 39 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.09 3.52 6.67 -2.39 -0.02 3.51 16 41 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 42 H 0.01 0.51 7.97 -2.38 -0.02 0.49 16 43 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 3.02 7.99 -2.39 -0.02 3.00 16 46 H 0.14 3.94 4.45 -37.25 -0.17 3.77 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.06 0.65 7.78 -2.39 -0.02 0.64 16 50 H 0.04 0.57 5.68 -2.39 -0.01 0.55 16 Total: -1.00 -70.22 401.54 -1.68 -71.90 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.33 Total: 16.28 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 7.87 Total: 30.18 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -8.79 Total: -117.83 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -3.12 Total: -46.30 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -70.22 -1.68 -71.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119161967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.273 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds