Wall clock time and date at job start Wed Apr 1 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36741 * 127.13279 * 2 1 4 4 C 1.50700 * 126.34836 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47190 * 89.99865 * 4 3 2 6 6 C 1.50697 * 109.46835 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00383 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99798 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99934 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00169 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46670 * 60.00079 * 10 8 6 12 12 H 1.48499 * 109.47069 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47026 * 300.00225 * 10 8 6 14 14 N 1.30296 * 107.30306 * 180.26518 * 3 2 1 15 15 N 1.28531 * 110.05063 * 359.55693 * 14 3 2 16 16 C 1.31217 * 109.86228 * 0.45641 * 15 14 3 17 17 N 1.38577 * 126.47206 * 179.73097 * 16 15 14 18 18 C 1.47896 * 111.00182 * 36.05858 * 17 16 15 19 19 C 1.53995 * 107.05734 * 214.15571 * 18 17 16 20 20 C 1.54590 * 105.14224 * 1.22591 * 19 18 17 21 21 H 1.09000 * 110.72579 * 263.59975 * 20 19 18 22 22 N 1.46498 * 110.72336 * 140.49103 * 20 19 18 23 23 C 1.38410 * 119.99936 * 86.45999 * 22 20 19 24 24 N 1.32492 * 119.21627 * 359.72207 * 23 22 20 25 25 C 1.32280 * 120.73918 * 179.72045 * 24 23 22 26 26 C 1.38597 * 119.19561 * 0.54797 * 25 24 23 27 27 C 1.38603 * 118.55984 * 359.72923 * 26 25 24 28 28 N 1.32276 * 119.19889 * 0.02562 * 27 26 25 29 29 C 1.48538 * 111.00022 * 278.66086 * 17 16 15 30 30 H 1.09005 * 109.47091 * 84.91839 * 1 2 3 31 31 H 1.08995 * 109.46637 * 204.91206 * 1 2 3 32 32 H 1.08997 * 109.46904 * 324.91276 * 1 2 3 33 33 H 1.08998 * 109.47134 * 329.99801 * 4 3 2 34 34 H 1.08998 * 109.46640 * 210.00288 * 4 3 2 35 35 H 1.09000 * 109.47104 * 300.00290 * 5 4 3 36 36 H 1.08995 * 109.46634 * 59.99929 * 5 4 3 37 37 H 0.97000 * 119.99721 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.91943 * 333.51113 * 18 17 16 39 39 H 1.09005 * 109.91709 * 94.80083 * 18 17 16 40 40 H 1.09003 * 110.30672 * 120.14642 * 19 18 17 41 41 H 1.09005 * 110.31022 * 242.20983 * 19 18 17 42 42 H 0.97005 * 120.00222 * 266.45167 * 22 20 19 43 43 H 1.08004 * 120.39796 * 180.25751 * 25 24 23 44 44 H 1.08000 * 120.72301 * 179.75070 * 26 25 24 45 45 H 1.08004 * 120.40357 * 180.02562 * 27 26 25 46 46 H 1.08997 * 110.66910 * 278.15834 * 29 17 16 47 47 H 1.08999 * 110.66299 * 41.28985 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5350 0.0005 5 6 1.7175 3.0235 1.4432 6 6 1.2897 4.4685 1.4437 7 1 1.1366 4.9867 0.5085 8 6 1.0947 5.1293 2.6380 9 7 1.2816 4.4984 3.7767 10 14 0.5650 6.9207 2.6387 11 1 -0.7385 7.0516 1.9392 12 1 0.4246 7.3948 4.0389 13 1 1.5870 7.7393 1.9384 14 7 3.5162 0.6482 -0.0058 15 7 3.5212 -0.6371 0.0000 16 6 2.2889 -1.0878 -0.0001 17 7 1.8979 -2.4172 0.0000 18 6 2.8192 -3.2406 0.8127 19 6 2.9078 -4.6210 0.1358 20 6 2.0100 -4.5142 -1.1181 21 1 1.0157 -4.9122 -0.9156 22 7 2.6221 -5.2071 -2.2545 23 6 2.4097 -6.5629 -2.4344 24 7 1.6546 -7.2200 -1.5663 25 6 1.4273 -8.5149 -1.7123 26 6 1.9990 -9.1853 -2.7821 27 6 2.7880 -8.4686 -3.6681 28 7 2.9712 -7.1741 -3.4672 29 6 1.9481 -2.9869 -1.3709 30 1 -0.3633 0.0910 -1.0237 31 1 -0.3632 -0.9320 0.4329 32 1 -0.3633 0.8409 0.5907 33 1 0.9054 2.6304 -0.5129 34 1 2.6118 3.1364 -0.5134 35 1 0.9678 2.4220 1.9572 36 1 2.6742 2.9281 1.9566 37 1 1.1447 4.9635 4.6169 38 1 3.8051 -2.7768 0.8408 39 1 2.4273 -3.3476 1.8243 40 1 3.9369 -4.8354 -0.1528 41 1 2.5343 -5.3956 0.8056 42 1 3.1762 -4.7157 -2.8810 43 1 0.8075 -9.0443 -1.0037 44 1 1.8330 -10.2432 -2.9227 45 1 3.2476 -8.9611 -4.5123 46 1 1.0493 -2.7255 -1.9293 47 1 2.8409 -2.6474 -1.8960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121494271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:17 Heat of formation + Delta-G solvation = 131.253604 kcal Electronic energy + Delta-G solvation = -28775.673818 eV Core-core repulsion = 24801.727080 eV Total energy + Delta-G solvation = -3973.946737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.06421 -41.81830 -40.29749 -36.74735 -36.35499 -35.60836 -34.53607 -33.86095 -32.56716 -31.17346 -30.01938 -29.04135 -28.29589 -27.08319 -25.50063 -24.28617 -24.03369 -23.64684 -22.04228 -21.68823 -21.34953 -19.25166 -18.77504 -18.57363 -17.95276 -17.40807 -17.27024 -16.80437 -16.50278 -16.42417 -15.94790 -15.52329 -15.36132 -15.21416 -14.96213 -14.82035 -14.42995 -14.35366 -14.19569 -14.01671 -13.69935 -13.48219 -13.32234 -13.11202 -12.83619 -12.73659 -12.63972 -12.51417 -12.09742 -11.91875 -11.81861 -11.79375 -11.73704 -11.56952 -11.34281 -11.31893 -11.09767 -10.56165 -10.38424 -10.02492 -9.71457 -9.08857 -8.19894 -6.32463 0.31779 0.31802 0.64048 1.18978 1.44010 1.47205 1.54726 1.67177 1.85224 2.42598 2.70566 3.00015 3.14381 3.20947 3.37286 3.47210 3.64417 3.77411 3.81410 3.90817 3.96146 4.08301 4.12391 4.16340 4.24821 4.34664 4.44904 4.52913 4.55141 4.63578 4.66658 4.71122 4.73198 4.85561 4.88224 4.89568 4.97565 5.03617 5.06295 5.29333 5.42951 5.46710 5.50689 5.58707 5.78475 5.85569 6.10381 6.14365 6.16821 6.49009 6.83374 7.37676 7.39203 7.64422 8.91886 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.036717 B = 0.001739 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.409871 B =16093.784517 C =16160.758331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.464 5.464 3 C 0.202 3.798 4 C -0.015 4.015 5 C 0.042 3.958 6 C -0.540 4.540 7 H 0.074 0.926 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.288 1.288 13 H -0.268 1.268 14 N -0.333 5.333 15 N -0.346 5.346 16 C 0.331 3.669 17 N -0.429 5.429 18 C 0.046 3.954 19 C -0.125 4.125 20 C 0.181 3.819 21 H 0.112 0.888 22 N -0.691 5.691 23 C 0.548 3.452 24 N -0.585 5.585 25 C 0.179 3.821 26 C -0.283 4.283 27 C 0.177 3.823 28 N -0.599 5.599 29 C 0.043 3.957 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.089 0.911 35 H -0.004 1.004 36 H -0.018 1.018 37 H 0.263 0.737 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.415 0.585 43 H 0.195 0.805 44 H 0.176 0.824 45 H 0.193 0.807 46 H 0.109 0.891 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -29.507 -14.532 33.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.156 5.156 3 C -0.067 4.067 4 C -0.055 4.055 5 C 0.004 3.996 6 C -0.578 4.578 7 H 0.092 0.908 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.793 3.207 11 H -0.185 1.185 12 H -0.214 1.214 13 H -0.193 1.193 14 N -0.172 5.172 15 N -0.190 5.190 16 C -0.027 4.027 17 N -0.155 5.155 18 C -0.082 4.082 19 C -0.164 4.164 20 C 0.074 3.926 21 H 0.129 0.871 22 N -0.328 5.328 23 C 0.191 3.809 24 N -0.308 5.308 25 C 0.012 3.988 26 C -0.308 4.308 27 C 0.011 3.989 28 N -0.322 5.322 29 C -0.085 4.085 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.014 0.986 36 H 0.000 1.000 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.253 0.747 43 H 0.212 0.788 44 H 0.193 0.807 45 H 0.210 0.790 46 H 0.127 0.873 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.488 -28.430 -13.862 31.821 hybrid contribution -0.355 0.417 0.015 0.547 sum -3.843 -28.013 -13.847 31.485 Atomic orbital electron populations 1.22388 0.72724 1.06284 1.05593 1.46321 1.10298 1.04932 1.54062 1.25437 0.86489 0.93003 1.01787 1.20167 1.02434 0.82854 1.00016 1.18841 0.94788 0.95554 0.90446 1.21569 1.46123 0.96882 0.93230 0.90827 1.26007 0.95339 1.03280 0.95133 1.70122 1.50237 1.38953 0.98106 0.85442 0.79376 0.78845 0.77028 1.18495 1.21382 1.19288 1.73934 1.19213 1.03135 1.20957 1.74334 1.18657 1.03839 1.22201 1.22641 0.85903 0.89267 1.04841 1.61601 1.48346 0.94242 1.11323 1.22953 0.94974 0.92313 0.97930 1.22754 1.00706 0.95563 0.97404 1.21510 0.97758 0.88972 0.84377 0.87063 1.44016 1.54876 1.03719 1.30236 1.19448 0.87745 0.87300 0.86390 1.67972 1.20789 1.11676 1.30400 1.23582 0.92140 0.88085 0.94965 1.22906 1.04468 1.04468 0.98942 1.23526 0.90608 0.87488 0.97273 1.67911 1.28187 1.13600 1.22543 1.23520 1.03159 0.93702 0.88078 0.87598 0.86937 0.89351 0.88229 0.89247 0.98600 0.99988 0.92824 0.92756 0.88834 0.91108 0.88760 0.74717 0.78817 0.80666 0.79005 0.87319 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 10.88 127.77 1.39 3.04 16 2 N -0.46 -15.32 3.21 -538.17 -1.73 -17.05 16 3 C 0.20 8.11 7.32 137.64 1.01 9.12 16 4 C -0.02 -0.61 5.46 29.85 0.16 -0.45 16 5 C 0.04 2.19 4.96 29.85 0.15 2.34 16 6 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 7 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 8 C 0.00 0.03 5.46 84.65 0.46 0.49 16 9 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 10 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 N -0.33 -14.86 12.18 -49.54 -0.60 -15.46 16 15 N -0.35 -13.95 11.06 -58.01 -0.64 -14.59 16 16 C 0.33 10.94 6.69 260.12 1.74 12.68 16 17 N -0.43 -10.55 5.28 -693.51 -3.66 -14.21 16 18 C 0.05 1.06 6.63 86.45 0.57 1.63 16 19 C -0.12 -2.24 6.67 31.47 0.21 -2.03 16 20 C 0.18 3.04 3.33 46.19 0.15 3.19 16 21 H 0.11 1.90 7.63 -2.39 -0.02 1.88 16 22 N -0.69 -12.02 5.30 -324.73 -1.72 -13.74 16 23 C 0.55 10.48 8.43 261.49 2.20 12.68 16 24 N -0.59 -10.13 9.27 -197.98 -1.84 -11.97 16 25 C 0.18 1.96 11.30 84.71 0.96 2.92 16 26 C -0.28 -2.30 10.16 22.44 0.23 -2.07 16 27 C 0.18 2.05 11.30 84.71 0.96 3.00 16 28 N -0.60 -11.04 10.46 -197.98 -2.07 -13.11 16 29 C 0.04 0.83 6.11 86.65 0.53 1.36 16 30 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.11 2.18 8.11 -2.39 -0.02 2.16 16 32 H 0.09 2.25 8.06 -2.39 -0.02 2.24 16 33 H 0.10 3.42 7.97 -2.39 -0.02 3.40 16 34 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H -0.02 -1.11 8.14 -2.39 -0.02 -1.12 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.05 1.55 6.91 -2.39 -0.02 1.53 16 39 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 41 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.41 6.87 8.65 -92.70 -0.80 6.06 16 43 H 0.20 0.79 8.06 -2.91 -0.02 0.76 16 44 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 45 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 46 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.05 1.20 7.88 -2.39 -0.02 1.18 16 Total: -1.00 -77.97 395.19 1.20 -76.78 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.19 Total: 15.92 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 10.96 Total: 18.66 kcal Atomic # 7 Polarization: -144.51 SS G_CDS: -11.98 Total: -156.48 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -77.97 1.20 -76.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.030 kcal (2) G-P(sol) polarization free energy of solvation -77.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds