Wall clock time and date at job start Wed Apr 1 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00242 * 2 1 4 4 H 1.09005 * 109.56982 * 29.84309 * 3 2 1 5 5 C 1.53089 * 109.52567 * 269.68620 * 3 2 1 6 6 O 1.42901 * 109.41723 * 297.70299 * 5 3 2 7 7 C 1.42901 * 114.09651 * 298.84410 * 6 5 3 8 8 C 1.53091 * 109.41869 * 61.15137 * 7 6 5 9 9 C 1.53173 * 109.16545 * 302.39559 * 8 7 6 10 10 H 1.08997 * 109.54087 * 297.02160 * 9 8 7 11 11 C 1.52997 * 109.54358 * 176.84426 * 9 8 7 12 12 C 1.50703 * 109.47084 * 65.00101 * 11 9 8 13 13 O 1.21273 * 119.99963 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99944 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99872 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46840 * 179.97438 * 15 14 12 17 17 N 1.46901 * 109.46769 * 180.02562 * 16 15 14 18 18 C 1.46906 * 110.99793 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47183 * 180.02562 * 18 17 16 20 20 O 1.21298 * 119.99556 * 359.97438 * 19 18 17 21 21 N 1.34769 * 120.00297 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00235 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00174 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99846 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00223 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99870 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47330 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47483 * 120.00046 * 26 24 22 29 29 H 1.48508 * 109.47390 * 240.00363 * 26 24 22 30 30 H 1.08998 * 109.47234 * 300.00204 * 1 2 3 31 31 H 1.09002 * 109.47073 * 59.99937 * 1 2 3 32 32 H 1.09006 * 109.47398 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.48128 * 177.71710 * 5 3 2 34 34 H 1.09001 * 109.48898 * 57.68647 * 5 3 2 35 35 H 1.09004 * 109.47772 * 301.17231 * 7 6 5 36 36 H 1.09001 * 109.49463 * 181.14588 * 7 6 5 37 37 H 1.09004 * 109.52460 * 182.48411 * 8 7 6 38 38 H 1.09001 * 109.57205 * 62.33448 * 8 7 6 39 39 H 1.08998 * 109.47624 * 304.99692 * 11 9 8 40 40 H 1.09002 * 109.47045 * 185.00068 * 11 9 8 41 41 H 0.97005 * 119.99680 * 359.97438 * 14 12 11 42 42 H 1.09001 * 109.46813 * 60.00258 * 15 14 12 43 43 H 1.08992 * 109.47397 * 300.00319 * 15 14 12 44 44 H 1.09002 * 109.47398 * 300.00326 * 16 15 14 45 45 H 1.09001 * 109.47194 * 60.00507 * 16 15 14 46 46 H 1.00898 * 110.99877 * 56.04956 * 17 16 15 47 47 H 1.08995 * 109.47087 * 299.99901 * 18 17 16 48 48 H 1.09002 * 109.46903 * 59.99922 * 18 17 16 49 49 H 0.97000 * 119.99683 * 0.02562 * 21 19 18 50 50 H 0.97003 * 120.00238 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 2.0013 0.5111 5 6 2.2256 1.7696 -1.4428 6 8 3.1433 0.8884 -2.0934 7 6 4.4380 0.8452 -1.4901 8 6 4.3116 0.3439 -0.0492 9 6 3.3606 1.2645 0.7219 10 1 3.7821 2.2686 0.7670 11 6 3.1663 0.7267 2.1410 12 6 4.4744 0.7918 2.8864 13 8 5.4647 1.2251 2.3366 14 7 4.5438 0.3684 4.1641 15 6 5.8156 0.4311 4.8885 16 6 5.6209 -0.1053 6.3080 17 7 6.8961 -0.0418 7.0346 18 6 6.7472 -0.5507 8.4047 19 6 8.0725 -0.4694 9.1175 20 8 9.0454 -0.0312 8.5407 21 7 8.1769 -0.8846 10.3954 22 6 9.3827 -0.8111 11.0437 23 1 10.2490 -0.4210 10.5302 24 6 9.4902 -1.2387 12.3614 25 7 8.4362 -1.7139 12.9860 26 14 11.1332 -1.1393 13.2445 27 1 12.1547 -0.5731 12.3273 28 1 11.0014 -0.2666 14.4388 29 1 11.5501 -2.4999 13.6693 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.6312 2.7813 -1.4425 34 1 1.2737 1.7598 -1.9739 35 1 4.8726 1.8448 -1.4904 36 1 5.0801 0.1694 -2.0551 37 1 5.2922 0.3521 0.4268 38 1 3.9153 -0.6715 -0.0492 39 1 2.8258 -0.3077 2.0942 40 1 2.4220 1.3310 2.6598 41 1 3.7516 0.0221 4.6039 42 1 6.1566 1.4654 4.9349 43 1 6.5594 -0.1737 4.3699 44 1 4.8772 0.4999 6.8264 45 1 5.2797 -1.1396 6.2620 46 1 7.2654 0.8971 7.0354 47 1 6.0110 0.0509 8.9376 48 1 6.4144 -1.5881 8.3727 49 1 7.3991 -1.2360 10.8562 50 1 8.5113 -2.0128 13.9058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129213182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:28 Heat of formation + Delta-G solvation = -169.133338 kcal Electronic energy + Delta-G solvation = -29290.477892 eV Core-core repulsion = 24931.610977 eV Total energy + Delta-G solvation = -4358.866915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.69528 -39.51151 -38.33803 -37.37408 -36.39895 -34.59740 -34.30155 -33.75989 -31.26304 -30.91119 -30.19329 -28.61257 -27.03634 -26.04547 -24.30516 -23.76772 -23.46605 -22.10677 -20.72645 -20.22104 -19.29839 -17.93392 -17.49687 -17.02694 -16.84610 -16.39938 -16.20455 -16.10709 -15.78864 -15.76839 -15.33456 -15.23620 -14.60112 -14.41256 -14.29316 -14.18138 -13.95151 -13.50996 -13.39440 -13.24392 -13.14953 -12.74190 -12.63216 -12.45304 -11.99757 -11.93432 -11.76659 -11.53825 -11.48205 -11.45198 -11.37698 -11.12480 -11.05961 -10.71934 -10.42953 -10.35167 -10.24245 -10.01631 -9.53942 -9.48371 -9.24563 -8.52465 -8.15150 -7.98404 -6.43746 -3.84562 2.43226 2.85867 3.15441 3.21258 3.26319 3.33865 3.63192 3.87916 4.07767 4.17646 4.23946 4.35012 4.42927 4.46771 4.69348 4.75840 4.86190 4.87149 4.94047 4.95673 4.97429 5.04182 5.07188 5.14912 5.15862 5.24276 5.25718 5.30525 5.36135 5.37413 5.53112 5.66918 5.70278 5.80287 5.85284 5.89267 5.92617 6.04731 6.19813 6.25577 6.64301 6.93376 7.07362 7.25981 7.53869 7.54658 8.01145 8.04435 8.58885 9.16058 9.51813 10.03088 10.74019 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.001356 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.294241 B =20649.821422 C =21235.348398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.057 3.943 4 H 0.070 0.930 5 C 0.042 3.958 6 O -0.374 6.374 7 C 0.061 3.939 8 C -0.152 4.152 9 C -0.068 4.068 10 H 0.091 0.909 11 C -0.132 4.132 12 C 0.512 3.488 13 O -0.536 6.536 14 N -0.730 5.730 15 C 0.120 3.880 16 C 0.050 3.950 17 N -0.666 5.666 18 C 0.053 3.947 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.400 0.600 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.032 0.968 45 H 0.077 0.923 46 H 0.352 0.648 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.242 5.324 -24.490 32.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.287 6.287 3 C -0.001 4.001 4 H 0.088 0.912 5 C -0.036 4.036 6 O -0.293 6.293 7 C -0.016 4.016 8 C -0.190 4.190 9 C -0.087 4.087 10 H 0.109 0.891 11 C -0.172 4.172 12 C 0.299 3.701 13 O -0.413 6.413 14 N -0.382 5.382 15 C -0.004 4.004 16 C -0.081 4.081 17 N -0.299 5.299 18 C -0.080 4.080 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.172 0.828 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.560 4.990 -25.476 32.504 hybrid contribution -0.891 0.677 1.898 2.203 sum -20.451 5.667 -23.578 31.722 Atomic orbital electron populations 1.22816 0.81345 1.02928 0.99732 1.87990 1.19182 1.26610 1.94917 1.22874 0.95115 0.85826 0.96315 0.91212 1.23020 0.94356 0.93173 0.93007 1.87950 1.22404 1.65273 1.53655 1.22617 0.84452 1.00767 0.93725 1.22299 1.01425 0.99750 0.95483 1.21048 0.93768 1.01064 0.92794 0.89117 1.21646 0.95354 1.04679 0.95541 1.20657 0.90882 0.77114 0.81471 1.90687 1.37851 1.45490 1.67265 1.45966 1.13055 1.65741 1.13469 1.21277 0.85519 1.01973 0.91646 1.22082 0.91761 1.01248 0.92975 1.59927 1.24437 1.30531 1.14992 1.21670 0.96830 1.01073 0.88442 1.19776 0.89743 0.84919 0.83062 1.90537 1.39005 1.50635 1.66422 1.41860 1.12142 1.55655 1.10329 1.19772 0.88866 1.39528 0.94739 0.87812 1.25265 0.99040 0.96863 0.96764 1.69618 1.29285 1.42613 1.12802 0.85793 0.81553 0.77881 0.79074 1.19181 1.20770 1.20725 0.94116 0.94182 0.89519 0.92289 0.88942 0.93224 0.88774 0.88764 0.90734 0.87910 0.89142 0.76660 0.91417 0.90191 0.94994 0.90474 0.82813 0.93738 0.89455 0.77461 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.82 101.05 1.09 1.23 16 2 O -0.37 -2.80 9.07 -42.72 -0.39 -3.18 16 3 C 0.06 0.37 2.43 -26.59 -0.06 0.30 16 4 H 0.07 0.32 7.79 -51.93 -0.40 -0.09 16 5 C 0.04 0.29 6.49 37.20 0.24 0.53 16 6 O -0.37 -3.62 10.70 -42.72 -0.46 -4.07 16 7 C 0.06 0.52 6.84 37.20 0.25 0.78 16 8 C -0.15 -1.38 4.96 -26.59 -0.13 -1.51 16 9 C -0.07 -0.52 1.76 -90.44 -0.16 -0.67 16 10 H 0.09 0.73 7.96 -51.93 -0.41 0.32 16 11 C -0.13 -0.90 4.94 -27.88 -0.14 -1.03 16 12 C 0.51 5.04 7.57 -10.98 -0.08 4.96 16 13 O -0.54 -7.29 13.97 5.56 0.08 -7.21 16 14 N -0.73 -6.27 5.56 -60.30 -0.33 -6.61 16 15 C 0.12 1.32 5.93 -4.04 -0.02 1.29 16 16 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 17 N -0.67 -10.41 6.13 -115.05 -0.70 -11.11 16 18 C 0.05 0.90 6.17 -4.97 -0.03 0.86 16 19 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 20 O -0.58 -15.84 15.78 5.54 0.09 -15.75 16 21 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 22 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 26 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 30 H 0.04 0.14 8.09 -51.93 -0.42 -0.28 16 31 H 0.04 0.16 7.86 -51.93 -0.41 -0.25 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.52 7.86 -51.93 -0.41 0.11 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.02 6.03 -51.93 -0.31 0.70 16 38 H 0.07 0.74 7.83 -51.93 -0.41 0.33 16 39 H 0.10 0.66 7.76 -51.93 -0.40 0.26 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.40 2.28 8.47 -40.82 -0.35 1.93 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 408.14 15.07 6.15 6.15 Total: -1.00 -34.62 408.14 -7.65 -42.28 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -8.34 Total: 11.94 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.61 Total: 9.49 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.37 Total: -55.61 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.68 Total: -30.22 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.62 -7.65 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129213182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.856 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds