Wall clock time and date at job start Wed Apr 1 2020 02:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00242 * 2 1 4 4 H 1.09005 * 109.56982 * 29.84309 * 3 2 1 5 5 C 1.53089 * 109.52567 * 269.68620 * 3 2 1 6 6 O 1.42901 * 109.41723 * 297.70299 * 5 3 2 7 7 C 1.42901 * 114.09651 * 298.84410 * 6 5 3 8 8 C 1.53091 * 109.41869 * 61.15137 * 7 6 5 9 9 C 1.53173 * 109.16545 * 302.39559 * 8 7 6 10 10 H 1.08997 * 109.54087 * 297.02160 * 9 8 7 11 11 C 1.52997 * 109.54358 * 176.84426 * 9 8 7 12 12 C 1.50703 * 109.47084 * 65.00101 * 11 9 8 13 13 O 1.21273 * 119.99963 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99944 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99872 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46840 * 179.97438 * 15 14 12 17 17 N 1.46901 * 109.46769 * 180.02562 * 16 15 14 18 18 C 1.46906 * 110.99793 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47183 * 180.02562 * 18 17 16 20 20 O 1.21298 * 119.99556 * 359.97438 * 19 18 17 21 21 N 1.34769 * 120.00297 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00235 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00174 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99846 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00223 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99870 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47330 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47483 * 120.00046 * 26 24 22 29 29 H 1.48508 * 109.47390 * 240.00363 * 26 24 22 30 30 H 1.08998 * 109.47234 * 300.00204 * 1 2 3 31 31 H 1.09002 * 109.47073 * 59.99937 * 1 2 3 32 32 H 1.09006 * 109.47398 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.48128 * 177.71710 * 5 3 2 34 34 H 1.09001 * 109.48898 * 57.68647 * 5 3 2 35 35 H 1.09004 * 109.47772 * 301.17231 * 7 6 5 36 36 H 1.09001 * 109.49463 * 181.14588 * 7 6 5 37 37 H 1.09004 * 109.52460 * 182.48411 * 8 7 6 38 38 H 1.09001 * 109.57205 * 62.33448 * 8 7 6 39 39 H 1.08998 * 109.47624 * 304.99692 * 11 9 8 40 40 H 1.09002 * 109.47045 * 185.00068 * 11 9 8 41 41 H 0.97005 * 119.99680 * 359.97438 * 14 12 11 42 42 H 1.09001 * 109.46813 * 60.00258 * 15 14 12 43 43 H 1.08992 * 109.47397 * 300.00319 * 15 14 12 44 44 H 1.09002 * 109.47398 * 300.00326 * 16 15 14 45 45 H 1.09001 * 109.47194 * 60.00507 * 16 15 14 46 46 H 1.00898 * 110.99877 * 56.04956 * 17 16 15 47 47 H 1.08995 * 109.47087 * 299.99901 * 18 17 16 48 48 H 1.09002 * 109.46903 * 59.99922 * 18 17 16 49 49 H 0.97000 * 119.99683 * 0.02562 * 21 19 18 50 50 H 0.97003 * 120.00238 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 2.0013 0.5111 5 6 2.2256 1.7696 -1.4428 6 8 3.1433 0.8884 -2.0934 7 6 4.4380 0.8452 -1.4901 8 6 4.3116 0.3439 -0.0492 9 6 3.3606 1.2645 0.7219 10 1 3.7821 2.2686 0.7670 11 6 3.1663 0.7267 2.1410 12 6 4.4744 0.7918 2.8864 13 8 5.4647 1.2251 2.3366 14 7 4.5438 0.3684 4.1641 15 6 5.8156 0.4311 4.8885 16 6 5.6209 -0.1053 6.3080 17 7 6.8961 -0.0418 7.0346 18 6 6.7472 -0.5507 8.4047 19 6 8.0725 -0.4694 9.1175 20 8 9.0454 -0.0312 8.5407 21 7 8.1769 -0.8846 10.3954 22 6 9.3827 -0.8111 11.0437 23 1 10.2490 -0.4210 10.5302 24 6 9.4902 -1.2387 12.3614 25 7 8.4362 -1.7139 12.9860 26 14 11.1332 -1.1393 13.2445 27 1 12.1547 -0.5731 12.3273 28 1 11.0014 -0.2666 14.4388 29 1 11.5501 -2.4999 13.6693 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.6312 2.7813 -1.4425 34 1 1.2737 1.7598 -1.9739 35 1 4.8726 1.8448 -1.4904 36 1 5.0801 0.1694 -2.0551 37 1 5.2922 0.3521 0.4268 38 1 3.9153 -0.6715 -0.0492 39 1 2.8258 -0.3077 2.0942 40 1 2.4220 1.3310 2.6598 41 1 3.7516 0.0221 4.6039 42 1 6.1566 1.4654 4.9349 43 1 6.5594 -0.1737 4.3699 44 1 4.8772 0.4999 6.8264 45 1 5.2797 -1.1396 6.2620 46 1 7.2654 0.8971 7.0354 47 1 6.0110 0.0509 8.9376 48 1 6.4144 -1.5881 8.3727 49 1 7.3991 -1.2360 10.8562 50 1 8.5113 -2.0128 13.9058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129213182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:27 Heat of formation + Delta-G solvation = -198.112310 kcal Electronic energy + Delta-G solvation = -29291.734514 eV Core-core repulsion = 24931.610977 eV Total energy + Delta-G solvation = -4360.123537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35143 -40.28125 -40.09692 -37.90754 -37.51421 -36.01293 -35.28388 -35.04377 -33.27523 -31.52061 -31.08062 -29.51271 -27.57389 -27.39676 -25.71152 -24.43886 -24.32445 -23.03131 -21.46225 -21.10254 -20.83420 -19.92491 -18.30429 -17.73908 -17.49780 -17.45338 -17.27270 -17.03097 -16.75775 -16.45693 -16.41837 -16.12116 -15.95548 -15.77829 -15.39412 -15.05247 -14.94285 -14.77062 -14.46954 -14.16879 -13.88787 -13.83046 -13.52986 -13.38578 -13.25931 -13.10483 -12.93642 -12.63323 -12.57942 -12.41161 -12.33581 -12.20570 -12.11756 -11.99971 -11.72518 -11.52055 -11.29136 -10.99058 -10.80612 -10.37186 -10.10872 -10.02033 -10.01290 -9.38614 -8.47534 -5.96143 1.36472 1.42219 1.56169 1.67287 2.04161 2.06954 2.30720 2.75265 3.02716 3.08940 3.19973 3.52338 3.66179 3.70715 3.81994 3.88119 3.93146 4.11294 4.17122 4.31131 4.31592 4.37351 4.46061 4.47322 4.50550 4.52697 4.56017 4.57180 4.61325 4.66810 4.77056 4.81538 4.90924 4.92030 4.96322 4.99541 5.05824 5.17816 5.31840 5.40917 5.46463 5.84538 6.06907 6.14950 6.32114 6.42105 6.57639 6.59781 7.12346 7.29687 7.55626 8.11329 8.69954 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.001356 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.294241 B =20649.821422 C =21235.348398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.062 3.938 4 H 0.097 0.903 5 C 0.033 3.967 6 O -0.396 6.396 7 C 0.061 3.939 8 C -0.147 4.147 9 C -0.069 4.069 10 H 0.085 0.915 11 C -0.121 4.121 12 C 0.508 3.492 13 O -0.579 6.579 14 N -0.717 5.717 15 C 0.128 3.872 16 C 0.059 3.941 17 N -0.687 5.687 18 C 0.068 3.932 19 C 0.435 3.565 20 O -0.626 6.626 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.275 1.275 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.417 0.583 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.346 0.654 47 H 0.073 0.927 48 H 0.109 0.891 49 H 0.398 0.602 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.767 5.415 -23.953 34.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.310 6.310 3 C 0.004 3.996 4 H 0.114 0.886 5 C -0.044 4.044 6 O -0.315 6.315 7 C -0.016 4.016 8 C -0.184 4.184 9 C -0.088 4.088 10 H 0.103 0.897 11 C -0.161 4.161 12 C 0.296 3.704 13 O -0.459 6.459 14 N -0.370 5.370 15 C 0.003 3.997 16 C -0.070 4.070 17 N -0.320 5.320 18 C -0.064 4.064 19 C 0.222 3.778 20 O -0.512 6.512 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.200 1.200 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.254 0.746 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.164 0.836 47 H 0.091 0.909 48 H 0.127 0.873 49 H 0.232 0.768 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.162 5.055 -24.921 33.731 hybrid contribution -0.145 0.650 1.662 1.791 sum -22.307 5.705 -23.259 32.728 Atomic orbital electron populations 1.22968 0.79972 1.03546 1.00825 1.87964 1.20778 1.27245 1.95031 1.22849 0.94696 0.86114 0.95953 0.88563 1.23260 0.94385 0.93286 0.93465 1.87912 1.22898 1.66190 1.54481 1.22613 0.84500 1.00993 0.93467 1.22178 1.00655 0.99651 0.95935 1.21044 0.94236 1.00255 0.93287 0.89679 1.21628 0.93990 1.05680 0.94753 1.21273 0.91474 0.76111 0.81555 1.90680 1.39585 1.47448 1.68204 1.45810 1.12828 1.65252 1.13138 1.21005 0.86154 1.00693 0.91805 1.22074 0.90178 1.02639 0.92152 1.59895 1.27363 1.30288 1.14467 1.21523 0.93060 1.03032 0.88764 1.20946 0.91697 0.82711 0.82421 1.90506 1.41425 1.52055 1.67251 1.41917 1.11564 1.56315 1.11119 1.19706 0.89453 1.41551 0.95808 0.90457 1.26011 1.02397 0.95889 0.96795 1.69667 1.30645 1.42359 1.13295 0.84882 0.77330 0.78333 0.77847 1.19959 1.19496 1.19607 0.92455 0.93604 0.89259 0.91193 0.87715 0.92854 0.88726 0.90983 0.91858 0.87155 0.86086 0.74566 0.92672 0.92736 0.92449 0.88993 0.83576 0.90894 0.87337 0.76837 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.82 113.37 1.23 1.39 16 2 O -0.39 -5.17 9.07 -141.82 -1.29 -6.46 16 3 C 0.06 0.67 2.43 30.68 0.07 0.74 16 4 H 0.10 0.53 7.79 -2.38 -0.02 0.51 16 5 C 0.03 0.40 6.49 72.01 0.47 0.87 16 6 O -0.40 -7.49 10.70 -141.82 -1.52 -9.01 16 7 C 0.06 1.06 6.84 72.01 0.49 1.56 16 8 C -0.15 -2.71 4.96 30.68 0.15 -2.56 16 9 C -0.07 -0.98 1.76 -10.68 -0.02 -0.99 16 10 H 0.08 1.30 7.96 -2.39 -0.02 1.29 16 11 C -0.12 -1.38 4.94 29.85 0.15 -1.24 16 12 C 0.51 9.51 7.57 87.66 0.66 10.18 16 13 O -0.58 -16.09 13.97 -3.01 -0.04 -16.13 16 14 N -0.72 -11.08 5.56 -463.07 -2.57 -13.65 16 15 C 0.13 2.73 5.93 86.38 0.51 3.24 16 16 C 0.06 1.16 5.80 86.30 0.50 1.66 16 17 N -0.69 -20.68 6.13 -517.91 -3.17 -23.85 16 18 C 0.07 2.21 6.17 85.56 0.53 2.74 16 19 C 0.43 20.47 7.82 87.66 0.69 21.15 16 20 O -0.63 -34.95 15.78 -3.08 -0.05 -35.00 16 21 N -0.57 -29.03 5.29 -306.99 -1.62 -30.66 16 22 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 25 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 26 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 30 H 0.06 0.21 8.09 -2.39 -0.02 0.19 16 31 H 0.05 0.26 7.86 -2.39 -0.02 0.25 16 32 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.98 7.86 -2.39 -0.02 0.96 16 35 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.66 6.03 -2.38 -0.01 1.65 16 38 H 0.06 1.28 7.83 -2.39 -0.02 1.26 16 39 H 0.11 1.16 7.76 -2.39 -0.02 1.15 16 40 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.42 3.48 8.47 -92.70 -0.79 2.69 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.35 11.14 8.43 -89.70 -0.76 10.39 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 49 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 50 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -77.26 408.14 -2.54 -79.80 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -1.30 Total: 38.46 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 6.71 Total: 20.35 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -7.09 Total: -116.88 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -2.89 Total: -66.60 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -77.26 -2.54 -79.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129213182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.312 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds