Wall clock time and date at job start Wed Apr 1 2020 02:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47003 * 2 1 4 4 C 1.42899 * 113.99808 * 176.27748 * 3 2 1 5 5 H 1.09002 * 109.47111 * 347.60101 * 4 3 2 6 6 C 1.50702 * 109.46869 * 227.61080 * 4 3 2 7 7 O 1.21282 * 119.99998 * 353.07852 * 6 4 3 8 8 N 1.34779 * 120.00258 * 173.08735 * 6 4 3 9 9 C 1.46501 * 120.00254 * 174.70181 * 8 6 4 10 10 C 1.52998 * 109.47266 * 180.27025 * 9 8 6 11 11 N 1.46894 * 109.47400 * 179.97438 * 10 9 8 12 12 C 1.46895 * 111.00094 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46780 * 180.02562 * 12 11 10 14 14 O 1.21289 * 120.00626 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99621 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99955 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00011 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00121 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00221 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46855 * 60.00250 * 20 18 16 22 22 H 1.48496 * 109.47338 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46914 * 300.00800 * 20 18 16 24 24 C 1.52998 * 109.47520 * 107.60802 * 4 3 2 25 25 H 1.08999 * 110.43631 * 181.05761 * 24 4 3 26 26 C 1.54815 * 110.48706 * 58.36860 * 24 4 3 27 27 C 1.54997 * 102.08916 * 220.44617 * 26 24 4 28 28 O 1.44382 * 103.49187 * 37.02285 * 27 26 24 29 29 C 1.43736 * 106.97467 * 319.93681 * 28 27 26 30 30 H 1.08997 * 109.46633 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00440 * 1 2 3 32 32 H 1.09004 * 109.46644 * 60.00239 * 1 2 3 33 33 H 1.08996 * 109.47407 * 239.99560 * 2 1 3 34 34 H 1.09005 * 109.47023 * 119.99382 * 2 1 3 35 35 H 0.97002 * 119.99674 * 354.96678 * 8 6 4 36 36 H 1.09000 * 109.46548 * 300.26892 * 9 8 6 37 37 H 1.09001 * 109.46965 * 60.26791 * 9 8 6 38 38 H 1.09002 * 109.47019 * 300.00384 * 10 9 8 39 39 H 1.08999 * 109.46946 * 59.99612 * 10 9 8 40 40 H 1.00903 * 110.99792 * 303.95922 * 11 10 9 41 41 H 1.09002 * 109.47216 * 299.99822 * 12 11 10 42 42 H 1.08999 * 109.47227 * 60.00289 * 12 11 10 43 43 H 0.96995 * 120.00260 * 0.02562 * 15 13 12 44 44 H 0.97000 * 120.00457 * 179.97438 * 19 18 16 45 45 H 1.08997 * 110.90655 * 338.64103 * 26 24 4 46 46 H 1.08996 * 110.90520 * 102.24622 * 26 24 4 47 47 H 1.09000 * 110.61842 * 278.52007 * 27 26 24 48 48 H 1.09004 * 110.74961 * 155.58921 * 27 26 24 49 49 H 1.08999 * 109.88305 * 267.09184 * 29 28 27 50 50 H 1.08997 * 110.00418 * 146.00987 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4283 1.4611 0.0848 5 1 3.8547 0.4945 0.3530 6 6 3.7890 2.4784 1.1365 7 8 2.9198 3.1398 1.6637 8 7 5.0775 2.6533 1.4911 9 6 5.4414 3.7201 2.4268 10 6 6.9544 3.7055 2.6536 11 7 7.3194 4.7756 3.5914 12 6 8.7681 4.7915 3.8340 13 6 9.1036 5.8993 4.7990 14 8 8.2226 6.6058 5.2415 15 7 10.3828 6.1051 5.1703 16 6 10.6882 7.1133 6.0478 17 1 9.9037 7.7424 6.4418 18 6 12.0068 7.3251 6.4310 19 7 12.9614 6.5594 5.9521 20 14 12.4229 8.6983 7.6272 21 1 11.7088 8.4712 8.9092 22 1 13.8874 8.7148 7.8720 23 1 12.0030 10.0009 7.0507 24 6 3.9859 1.9068 -1.2685 25 1 5.0726 1.9806 -1.2266 26 6 3.3638 3.2598 -1.6918 27 6 3.1276 3.0479 -3.2089 28 8 2.7284 1.6632 -3.2976 29 6 3.5541 0.9288 -2.3783 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.7643 2.0752 1.1237 36 1 5.1455 4.6837 2.0120 37 1 4.9301 3.5608 3.3762 38 1 7.2503 2.7418 3.0683 39 1 7.4656 3.8648 1.7042 40 1 6.9981 5.6726 3.2593 41 1 9.0761 3.8355 4.2576 42 1 9.2923 4.9577 2.8929 43 1 11.0875 5.5404 4.8162 44 1 13.8820 6.7075 6.2193 45 1 2.4218 3.4343 -1.1721 46 1 4.0605 4.0797 -1.5173 47 1 4.0475 3.2187 -3.7682 48 1 2.3330 3.7004 -3.5709 49 1 4.4329 0.5438 -2.8956 50 1 2.9879 0.1039 -1.9458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131888708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:55 Heat of formation + Delta-G solvation = -160.791633 kcal Electronic energy + Delta-G solvation = -29730.587720 eV Core-core repulsion = 25372.082529 eV Total energy + Delta-G solvation = -4358.505191 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90185 -39.29118 -38.36388 -37.89824 -36.29153 -34.47751 -33.85254 -33.46737 -31.31310 -31.26733 -30.13961 -29.48369 -27.20271 -25.71047 -23.90388 -23.43942 -22.81741 -22.21479 -21.65992 -20.49767 -19.32183 -18.11450 -17.88359 -17.36507 -16.95416 -16.45798 -16.16162 -16.04375 -15.82250 -15.72014 -15.31210 -15.06218 -14.63451 -14.57374 -14.28330 -13.96853 -13.70032 -13.45431 -13.40279 -13.20595 -13.13785 -12.76985 -12.45567 -12.37030 -12.01314 -11.96649 -11.91819 -11.68439 -11.56826 -11.51669 -11.50082 -11.42234 -11.13919 -11.03168 -10.45839 -10.39870 -10.23812 -10.16176 -9.60432 -9.52689 -9.32656 -8.54057 -8.17062 -7.99308 -6.44297 -3.85270 2.28411 2.49986 3.18834 3.24662 3.29075 3.34303 3.52766 3.86879 3.91952 4.03375 4.09365 4.25535 4.39636 4.44109 4.59147 4.62347 4.69191 4.80759 4.82118 4.87968 4.92355 4.94072 4.94540 5.13651 5.21504 5.23126 5.27012 5.32293 5.33340 5.37560 5.48551 5.55752 5.67957 5.75883 5.78627 5.82373 5.85934 5.90240 6.10580 6.21891 6.42772 6.63123 7.04494 7.19236 7.52106 7.52878 7.93707 8.03114 8.58059 9.15089 9.50773 10.02142 10.73259 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024306 B = 0.001539 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.688294 B =18189.243921 C =18699.433404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.082 3.918 5 H 0.090 0.910 6 C 0.508 3.492 7 O -0.511 6.511 8 N -0.728 5.728 9 C 0.121 3.879 10 C 0.050 3.950 11 N -0.666 5.666 12 C 0.053 3.947 13 C 0.439 3.561 14 O -0.582 6.582 15 N -0.563 5.563 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.932 3.068 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.135 4.135 25 H 0.097 0.903 26 C -0.148 4.148 27 C 0.049 3.951 28 O -0.372 6.372 29 C 0.053 3.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.353 0.647 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.061 0.939 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 -17.032 -19.512 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.264 6.264 4 C 0.020 3.980 5 H 0.107 0.893 6 C 0.292 3.708 7 O -0.385 6.385 8 N -0.382 5.382 9 C -0.002 4.002 10 C -0.080 4.080 11 N -0.299 5.299 12 C -0.080 4.080 13 C 0.224 3.776 14 O -0.466 6.466 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.154 4.154 25 H 0.116 0.884 26 C -0.185 4.185 27 C -0.027 4.027 28 O -0.291 6.291 29 C -0.024 4.024 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.232 0.768 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.172 0.828 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.112 0.888 49 H 0.080 0.920 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.454 -16.339 -18.369 30.150 hybrid contribution 1.972 0.188 -0.428 2.026 sum -15.482 -16.151 -18.797 29.221 Atomic orbital electron populations 1.21717 0.93173 1.02294 1.03586 1.22794 0.96425 0.83399 0.99910 1.88082 1.17813 1.26420 1.94102 1.21828 0.84544 0.98336 0.93266 0.89254 1.20506 0.82602 0.84550 0.83109 1.90757 1.47840 1.46533 1.53362 1.45869 1.08148 1.36102 1.48126 1.21296 0.95187 0.90126 0.93637 1.22072 0.93918 0.97277 0.94745 1.59914 1.13835 1.08309 1.47826 1.21667 0.87974 1.00025 0.98322 1.19769 0.83702 0.87559 0.86532 1.90536 1.46942 1.50097 1.59027 1.41848 1.06214 1.30913 1.40944 1.19669 0.93419 1.09397 1.20548 0.87923 1.25262 0.95254 0.98753 0.98607 1.69600 1.00973 1.39159 1.44591 0.85905 0.77099 0.80748 0.80400 1.19851 1.20969 1.19901 1.23007 1.00973 0.97163 0.94282 0.88449 1.23161 1.02972 0.95960 0.96457 1.23543 1.00387 0.83358 0.95443 1.88874 1.59432 1.19039 1.61772 1.23233 0.94993 0.94867 0.89319 0.91006 0.91577 0.91542 0.92870 0.93187 0.76780 0.91316 0.90038 0.90454 0.94940 0.82769 0.89467 0.93720 0.77460 0.91805 0.88784 0.90179 0.92228 0.88805 0.92046 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.35 6.11 37.16 0.23 0.58 16 3 O -0.35 -3.41 8.33 -55.05 -0.46 -3.87 16 4 C 0.08 0.63 2.36 -27.88 -0.07 0.57 16 5 H 0.09 0.43 7.61 -51.93 -0.39 0.04 16 6 C 0.51 5.38 6.53 -10.98 -0.07 5.31 16 7 O -0.51 -7.95 16.52 -14.26 -0.24 -8.18 16 8 N -0.73 -6.05 5.54 -60.29 -0.33 -6.38 16 9 C 0.12 1.30 5.94 -4.04 -0.02 1.27 16 10 C 0.05 0.53 5.80 -3.83 -0.02 0.51 16 11 N -0.67 -10.18 6.12 -115.06 -0.70 -10.89 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 C 0.44 10.20 7.82 -10.98 -0.09 10.12 16 14 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 15 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 16 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 20 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.14 -0.86 2.97 -89.09 -0.26 -1.12 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 26 C -0.15 -1.17 5.98 -24.72 -0.15 -1.32 16 27 C 0.05 0.36 7.72 38.21 0.29 0.65 16 28 O -0.37 -3.42 11.52 -35.23 -0.41 -3.82 16 29 C 0.05 0.34 7.08 37.73 0.27 0.61 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.28 5.71 -51.93 -0.30 -0.01 16 34 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.40 1.99 8.48 -40.82 -0.35 1.65 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.35 5.62 8.43 -39.29 -0.33 5.29 16 41 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.09 0.99 7.25 -51.93 -0.38 0.62 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.50 4.75 -51.93 -0.25 0.25 16 LS Contribution 410.64 15.07 6.19 6.19 Total: -1.00 -35.52 410.64 -8.17 -43.68 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.16 Total: 11.21 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 0.22 Total: 9.44 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.37 Total: -54.90 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.01 Total: -31.52 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.52 -8.17 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131888708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.107 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds