Wall clock time and date at job start Wed Apr 1 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47003 * 2 1 4 4 C 1.42899 * 113.99808 * 176.27748 * 3 2 1 5 5 H 1.09002 * 109.47111 * 347.60101 * 4 3 2 6 6 C 1.50702 * 109.46869 * 227.61080 * 4 3 2 7 7 O 1.21282 * 119.99998 * 353.07852 * 6 4 3 8 8 N 1.34779 * 120.00258 * 173.08735 * 6 4 3 9 9 C 1.46501 * 120.00254 * 174.70181 * 8 6 4 10 10 C 1.52998 * 109.47266 * 180.27025 * 9 8 6 11 11 N 1.46894 * 109.47400 * 179.97438 * 10 9 8 12 12 C 1.46895 * 111.00094 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46780 * 180.02562 * 12 11 10 14 14 O 1.21289 * 120.00626 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99621 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99955 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00011 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00121 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00221 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46855 * 60.00250 * 20 18 16 22 22 H 1.48496 * 109.47338 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46914 * 300.00800 * 20 18 16 24 24 C 1.52998 * 109.47520 * 107.60802 * 4 3 2 25 25 H 1.08999 * 110.43631 * 181.05761 * 24 4 3 26 26 C 1.54815 * 110.48706 * 58.36860 * 24 4 3 27 27 C 1.54997 * 102.08916 * 220.44617 * 26 24 4 28 28 O 1.44382 * 103.49187 * 37.02285 * 27 26 24 29 29 C 1.43736 * 106.97467 * 319.93681 * 28 27 26 30 30 H 1.08997 * 109.46633 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00440 * 1 2 3 32 32 H 1.09004 * 109.46644 * 60.00239 * 1 2 3 33 33 H 1.08996 * 109.47407 * 239.99560 * 2 1 3 34 34 H 1.09005 * 109.47023 * 119.99382 * 2 1 3 35 35 H 0.97002 * 119.99674 * 354.96678 * 8 6 4 36 36 H 1.09000 * 109.46548 * 300.26892 * 9 8 6 37 37 H 1.09001 * 109.46965 * 60.26791 * 9 8 6 38 38 H 1.09002 * 109.47019 * 300.00384 * 10 9 8 39 39 H 1.08999 * 109.46946 * 59.99612 * 10 9 8 40 40 H 1.00903 * 110.99792 * 303.95922 * 11 10 9 41 41 H 1.09002 * 109.47216 * 299.99822 * 12 11 10 42 42 H 1.08999 * 109.47227 * 60.00289 * 12 11 10 43 43 H 0.96995 * 120.00260 * 0.02562 * 15 13 12 44 44 H 0.97000 * 120.00457 * 179.97438 * 19 18 16 45 45 H 1.08997 * 110.90655 * 338.64103 * 26 24 4 46 46 H 1.08996 * 110.90520 * 102.24622 * 26 24 4 47 47 H 1.09000 * 110.61842 * 278.52007 * 27 26 24 48 48 H 1.09004 * 110.74961 * 155.58921 * 27 26 24 49 49 H 1.08999 * 109.88305 * 267.09184 * 29 28 27 50 50 H 1.08997 * 110.00418 * 146.00987 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4283 1.4611 0.0848 5 1 3.8547 0.4945 0.3530 6 6 3.7890 2.4784 1.1365 7 8 2.9198 3.1398 1.6637 8 7 5.0775 2.6533 1.4911 9 6 5.4414 3.7201 2.4268 10 6 6.9544 3.7055 2.6536 11 7 7.3194 4.7756 3.5914 12 6 8.7681 4.7915 3.8340 13 6 9.1036 5.8993 4.7990 14 8 8.2226 6.6058 5.2415 15 7 10.3828 6.1051 5.1703 16 6 10.6882 7.1133 6.0478 17 1 9.9037 7.7424 6.4418 18 6 12.0068 7.3251 6.4310 19 7 12.9614 6.5594 5.9521 20 14 12.4229 8.6983 7.6272 21 1 11.7088 8.4712 8.9092 22 1 13.8874 8.7148 7.8720 23 1 12.0030 10.0009 7.0507 24 6 3.9859 1.9068 -1.2685 25 1 5.0726 1.9806 -1.2266 26 6 3.3638 3.2598 -1.6918 27 6 3.1276 3.0479 -3.2089 28 8 2.7284 1.6632 -3.2976 29 6 3.5541 0.9288 -2.3783 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.7643 2.0752 1.1237 36 1 5.1455 4.6837 2.0120 37 1 4.9301 3.5608 3.3762 38 1 7.2503 2.7418 3.0683 39 1 7.4656 3.8648 1.7042 40 1 6.9981 5.6726 3.2593 41 1 9.0761 3.8355 4.2576 42 1 9.2923 4.9577 2.8929 43 1 11.0875 5.5404 4.8162 44 1 13.8820 6.7075 6.2193 45 1 2.4218 3.4343 -1.1721 46 1 4.0605 4.0797 -1.5173 47 1 4.0475 3.2187 -3.7682 48 1 2.3330 3.7004 -3.5709 49 1 4.4329 0.5438 -2.8956 50 1 2.9879 0.1039 -1.9458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131888708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:54 Heat of formation + Delta-G solvation = -190.343635 kcal Electronic energy + Delta-G solvation = -29731.869191 eV Core-core repulsion = 25372.082529 eV Total energy + Delta-G solvation = -4359.786662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57584 -40.19437 -39.95804 -38.55439 -37.41476 -35.99906 -35.29009 -34.12899 -33.26393 -31.86466 -30.94531 -30.29338 -28.22520 -27.04376 -25.41690 -24.00261 -23.35202 -23.12826 -22.33816 -21.19908 -21.08782 -19.92056 -18.77413 -18.03009 -17.80684 -17.50300 -17.11389 -17.04398 -16.77330 -16.53790 -16.32319 -16.12018 -15.86829 -15.69440 -15.47157 -15.15940 -14.94915 -14.59066 -14.31832 -14.05462 -13.92201 -13.69305 -13.51146 -13.32385 -13.26212 -12.94645 -12.93315 -12.60203 -12.56418 -12.49179 -12.43591 -12.39827 -12.24710 -12.12282 -12.01464 -11.67673 -11.50475 -11.08870 -10.75497 -10.36940 -10.24666 -10.17779 -10.01470 -9.37134 -8.46664 -5.95283 1.39998 1.42287 1.49410 1.52794 1.77014 2.05731 2.29877 2.74111 2.96732 3.08030 3.20795 3.37060 3.51899 3.56102 3.73688 3.89993 3.95323 4.08312 4.10983 4.13705 4.22257 4.28662 4.32476 4.37145 4.42410 4.46445 4.47230 4.51500 4.62328 4.75639 4.80680 4.83465 4.84154 4.90179 4.94800 4.96390 5.04696 5.19069 5.25478 5.31928 5.41067 5.85320 5.91722 6.07439 6.09091 6.32753 6.52941 6.60529 7.12923 7.19958 7.56534 8.12396 8.70255 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024306 B = 0.001539 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.688294 B =18189.243921 C =18699.433404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.378 6.378 4 C 0.084 3.916 5 H 0.126 0.874 6 C 0.506 3.494 7 O -0.571 6.571 8 N -0.708 5.708 9 C 0.129 3.871 10 C 0.060 3.940 11 N -0.688 5.688 12 C 0.069 3.931 13 C 0.434 3.566 14 O -0.626 6.626 15 N -0.572 5.572 16 C -0.337 4.337 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.918 5.918 20 Si 0.991 3.009 21 H -0.274 1.274 22 H -0.269 1.269 23 H -0.273 1.273 24 C -0.128 4.128 25 H 0.128 0.872 26 C -0.150 4.150 27 C 0.049 3.951 28 O -0.399 6.399 29 C 0.050 3.950 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.420 0.580 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.345 0.655 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.182 -19.083 -20.895 31.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.297 6.297 4 C 0.023 3.977 5 H 0.143 0.857 6 C 0.292 3.708 7 O -0.449 6.449 8 N -0.363 5.363 9 C 0.004 3.996 10 C -0.069 4.069 11 N -0.321 5.321 12 C -0.063 4.063 13 C 0.222 3.778 14 O -0.513 6.513 15 N -0.209 5.209 16 C -0.466 4.466 17 H 0.095 0.905 18 C -0.211 4.211 19 N -0.559 5.559 20 Si 0.815 3.185 21 H -0.199 1.199 22 H -0.194 1.194 23 H -0.198 1.198 24 C -0.147 4.147 25 H 0.146 0.854 26 C -0.188 4.188 27 C -0.027 4.027 28 O -0.319 6.319 29 C -0.027 4.027 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.164 0.836 41 H 0.127 0.873 42 H 0.092 0.908 43 H 0.232 0.768 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.602 -18.453 -19.791 31.235 hybrid contribution 1.339 0.797 -0.016 1.559 sum -14.263 -17.655 -19.808 30.124 Atomic orbital electron populations 1.21745 0.93525 1.03340 1.02188 1.22984 0.96319 0.82513 1.01295 1.88070 1.19198 1.28215 1.94194 1.21965 0.84044 0.98845 0.92861 0.85652 1.21170 0.82401 0.84282 0.82968 1.90735 1.49623 1.48938 1.55596 1.45641 1.08185 1.35461 1.47024 1.21036 0.95364 0.90320 0.92855 1.22070 0.93373 0.96321 0.95183 1.59877 1.12922 1.09154 1.50183 1.21519 0.89252 0.97870 0.97668 1.20974 0.82472 0.88106 0.86289 1.90506 1.48033 1.52079 1.60673 1.41909 1.07186 1.30748 1.41058 1.19626 0.93563 1.10875 1.22570 0.90481 1.25999 0.94659 1.00689 0.99720 1.69651 1.01297 1.39914 1.45018 0.85013 0.77446 0.77911 0.78110 1.19893 1.19376 1.19779 1.23064 1.02425 0.95881 0.93346 0.85403 1.23089 1.01546 0.97349 0.96779 1.23605 1.01143 0.82845 0.95081 1.88841 1.60614 1.19837 1.62566 1.23399 0.95615 0.94596 0.89057 0.88724 0.93294 0.92593 0.90930 0.92124 0.74271 0.92648 0.92738 0.88710 0.92087 0.83594 0.87252 0.90784 0.76818 0.91260 0.92243 0.89863 0.90370 0.89097 0.89747 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.04 0.56 6.11 71.98 0.44 1.00 16 3 O -0.38 -7.31 8.33 -130.03 -1.08 -8.39 16 4 C 0.08 1.14 2.36 29.85 0.07 1.21 16 5 H 0.13 0.75 7.61 -2.39 -0.02 0.73 16 6 C 0.51 10.31 6.53 87.66 0.57 10.88 16 7 O -0.57 -18.48 16.52 15.91 0.26 -18.22 16 8 N -0.71 -10.27 5.54 -463.05 -2.56 -12.84 16 9 C 0.13 2.64 5.94 86.38 0.51 3.15 16 10 C 0.06 1.08 5.80 86.30 0.50 1.58 16 11 N -0.69 -20.02 6.12 -517.95 -3.17 -23.19 16 12 C 0.07 2.16 6.17 85.56 0.53 2.69 16 13 C 0.43 20.16 7.82 87.66 0.69 20.84 16 14 O -0.63 -34.67 15.78 -3.06 -0.05 -34.72 16 15 N -0.57 -28.71 5.29 -306.98 -1.62 -30.33 16 16 C -0.34 -19.00 9.68 84.04 0.81 -18.18 16 17 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 18 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 19 N -0.92 -48.64 13.05 21.66 0.28 -48.35 16 20 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 C -0.13 -1.30 2.97 -9.80 -0.03 -1.33 16 25 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 26 C -0.15 -2.30 5.98 31.90 0.19 -2.10 16 27 C 0.05 0.68 7.72 72.67 0.56 1.24 16 28 O -0.40 -6.78 11.52 -148.98 -1.72 -8.50 16 29 C 0.05 0.50 7.08 72.35 0.51 1.02 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.07 0.61 5.71 -2.39 -0.01 0.59 16 34 H 0.06 0.61 8.08 -2.38 -0.02 0.59 16 35 H 0.42 2.53 8.48 -92.71 -0.79 1.75 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.35 10.86 8.43 -89.69 -0.76 10.11 16 41 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 44 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.06 1.34 7.25 -2.39 -0.02 1.32 16 46 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.09 0.80 4.75 -2.39 -0.01 0.79 16 Total: -1.00 -81.21 410.64 -2.37 -83.58 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -1.30 Total: 35.64 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 6.57 Total: 20.68 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -7.08 Total: -114.72 kcal Atomic # 8 Polarization: -67.23 SS G_CDS: -2.59 Total: -69.82 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -81.21 -2.37 -83.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131888708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.763 kcal (2) G-P(sol) polarization free energy of solvation -81.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds