Wall clock time and date at job start Wed Apr 1 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00232 * 2 1 4 4 C 1.53001 * 109.47231 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47263 * 180.02562 * 4 3 2 6 6 O 1.21289 * 120.00241 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00612 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00752 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47281 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.83100 * 60.91136 * 9 8 7 11 11 C 1.51048 * 109.83986 * 181.88353 * 9 8 7 12 12 N 1.47389 * 111.56056 * 213.54029 * 11 9 8 13 13 C 1.46895 * 111.00146 * 193.27325 * 12 11 9 14 14 C 1.50705 * 109.47219 * 193.22822 * 13 12 11 15 15 O 1.21291 * 119.99569 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00227 * 179.97438 * 14 13 12 17 17 C 1.37100 * 120.00488 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99544 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00286 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00195 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00022 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47189 * 90.00490 * 21 19 17 23 23 H 1.48508 * 109.47243 * 210.00361 * 21 19 17 24 24 H 1.48497 * 109.47145 * 330.00353 * 21 19 17 25 25 C 1.48029 * 113.47338 * 319.08978 * 12 11 9 26 26 C 1.50986 * 113.13108 * 318.18025 * 25 12 11 27 27 C 1.54712 * 109.08256 * 92.04309 * 26 25 12 28 28 O 1.36611 * 110.79001 * 286.65827 * 27 26 25 29 29 H 1.09004 * 109.47462 * 300.00039 * 1 2 3 30 30 H 1.09004 * 109.46968 * 59.99808 * 1 2 3 31 31 H 1.08995 * 109.47555 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47234 * 59.99976 * 3 2 1 33 33 H 1.09008 * 109.47257 * 300.00257 * 3 2 1 34 34 H 1.09000 * 109.47105 * 59.99807 * 4 3 2 35 35 H 1.08995 * 109.46965 * 299.99940 * 4 3 2 36 36 H 0.97007 * 119.99529 * 359.97438 * 7 5 4 37 37 H 1.09006 * 109.46888 * 60.00063 * 8 7 5 38 38 H 1.08998 * 109.47175 * 300.00294 * 8 7 5 39 39 H 1.09005 * 109.05984 * 334.07851 * 11 9 8 40 40 H 1.08999 * 109.05994 * 93.00249 * 11 9 8 41 41 H 1.08998 * 109.46871 * 313.22705 * 13 12 11 42 42 H 1.09001 * 109.47417 * 73.22763 * 13 12 11 43 43 H 0.97005 * 120.00092 * 0.02562 * 16 14 13 44 44 H 0.97001 * 120.00246 * 179.97438 * 20 19 17 45 45 H 1.08995 * 108.74962 * 197.23613 * 25 12 11 46 46 H 1.09003 * 108.74837 * 79.12198 * 25 12 11 47 47 H 1.08999 * 109.53494 * 211.92321 * 26 25 12 48 48 H 1.09000 * 109.53597 * 332.16066 * 26 25 12 49 49 H 1.09007 * 109.21518 * 46.98796 * 27 26 25 50 50 H 1.09000 * 109.21479 * 166.36604 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1484 2.5612 0.0000 6 8 3.4356 3.5425 0.0004 7 7 5.4888 2.7021 -0.0009 8 6 6.0848 4.0404 -0.0009 9 6 7.6100 3.9195 -0.0014 10 1 7.9389 3.3935 -0.8977 11 6 8.2332 5.2946 0.0453 12 7 9.4992 5.3414 -0.7080 13 6 10.2484 6.5675 -0.4029 14 6 11.3555 6.7436 -1.4101 15 8 11.5052 5.9282 -2.2954 16 7 12.1784 7.8077 -1.3279 17 6 13.1853 7.9683 -2.2445 18 1 13.3186 7.2421 -3.0328 19 6 14.0340 9.0650 -2.1593 20 7 14.9994 9.2186 -3.0376 21 14 13.8029 10.3212 -0.7963 22 1 14.6063 9.9213 0.3869 23 1 14.2512 11.6550 -1.2711 24 1 12.3676 10.3861 -0.4211 25 6 10.3444 4.1415 -0.5158 26 6 10.3848 3.6679 0.9173 27 6 9.2724 2.6146 1.1335 28 8 8.0425 3.2082 1.1668 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6437 -0.8908 35 1 3.8574 0.6435 0.8891 36 1 6.0590 1.9173 -0.0016 37 1 5.7638 4.5810 0.8896 38 1 5.7625 4.5817 -0.8904 39 1 7.5371 6.0157 -0.3831 40 1 8.4269 5.5625 1.0840 41 1 9.5765 7.4246 -0.4479 42 1 10.6756 6.4929 0.5972 43 1 12.0585 8.4601 -0.6201 44 1 15.5917 9.9845 -2.9784 45 1 11.3599 4.3732 -0.8370 46 1 9.9571 3.3364 -1.1401 47 1 11.3564 3.2199 1.1259 48 1 10.2210 4.5134 1.5854 49 1 9.2996 1.8916 0.3182 50 1 9.4462 2.0978 2.0773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148970047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:45 Heat of formation + Delta-G solvation = -146.653192 kcal Electronic energy + Delta-G solvation = -30161.699150 eV Core-core repulsion = 25803.807047 eV Total energy + Delta-G solvation = -4357.892102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61154 -39.86516 -38.46253 -38.12110 -36.04806 -35.37929 -33.92359 -32.88215 -32.07091 -31.69871 -30.34571 -27.63162 -26.85519 -26.41577 -25.06284 -23.87177 -23.17317 -21.79124 -20.86172 -20.05827 -19.29788 -18.20396 -17.83392 -17.06535 -17.02945 -16.68925 -16.45404 -16.15060 -15.91144 -15.44632 -15.34072 -15.23839 -15.04922 -14.75423 -14.31227 -13.88692 -13.71243 -13.67833 -13.45637 -12.96411 -12.84466 -12.80543 -12.55820 -12.38275 -12.27710 -12.00199 -11.89954 -11.83488 -11.64859 -11.60996 -11.38244 -11.16562 -10.92837 -10.61807 -10.43369 -10.24611 -10.10651 -9.99777 -9.74533 -9.54082 -9.39335 -8.57885 -8.19728 -8.00037 -6.33184 -3.84724 2.30592 2.61521 3.01056 3.04826 3.13526 3.30963 3.50285 3.71130 3.84156 4.08341 4.33877 4.47551 4.59404 4.64582 4.72133 4.75796 4.76662 4.86101 4.93390 4.95251 5.00360 5.08951 5.15370 5.18658 5.24706 5.30273 5.34974 5.37186 5.40144 5.47427 5.54388 5.56928 5.69806 5.74214 5.75932 5.82081 5.90617 6.06813 6.09369 6.37109 6.68197 7.06633 7.11156 7.14553 7.37151 7.56177 7.86833 8.12071 8.57952 8.92997 9.40300 9.80860 10.79885 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.001733 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.142940 B =16149.192923 C =16508.383751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.544 6.544 7 N -0.721 5.721 8 C 0.132 3.868 9 C 0.083 3.917 10 H 0.083 0.917 11 C 0.034 3.966 12 N -0.519 5.519 13 C 0.045 3.955 14 C 0.453 3.547 15 O -0.559 6.559 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.049 3.951 26 C -0.196 4.196 27 C 0.077 3.923 28 O -0.381 6.381 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.405 0.595 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.040 0.960 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.113 -15.808 11.568 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.304 3.696 6 O -0.421 6.421 7 N -0.373 5.373 8 C 0.008 3.992 9 C 0.026 3.974 10 H 0.101 0.899 11 C -0.094 4.094 12 N -0.243 5.243 13 C -0.087 4.087 14 C 0.238 3.762 15 O -0.441 6.441 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.521 5.521 21 Si 0.705 3.295 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.078 4.078 26 C -0.236 4.236 27 C -0.001 4.001 28 O -0.300 6.300 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.239 0.761 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.058 0.942 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.450 -15.671 10.540 29.337 hybrid contribution 0.676 1.102 1.674 2.115 sum -21.774 -14.569 12.214 28.906 Atomic orbital electron populations 1.22740 0.80494 1.02794 1.00278 1.87795 1.20155 1.28012 1.95586 1.22162 0.91848 0.84243 1.01868 1.21461 0.95556 0.95125 1.05855 1.20372 0.82199 0.91117 0.75868 1.90734 1.60972 1.40794 1.49637 1.45820 1.06584 1.09548 1.75328 1.21407 0.89748 0.84506 1.03550 1.22183 0.93039 0.93041 0.89147 0.89881 1.22375 0.92380 0.97063 0.97617 1.61753 1.04097 1.01745 1.56701 1.21860 0.96234 0.93429 0.97162 1.19619 0.84531 0.83933 0.88101 1.90547 1.73030 1.43816 1.36701 1.42217 1.29616 1.22609 1.28609 1.19420 1.05357 1.09948 1.08635 0.86276 1.25027 0.95996 0.97552 0.97504 1.69620 1.17476 1.30097 1.34916 0.86684 0.78479 0.81985 0.82310 1.19686 1.20147 1.19485 1.22117 1.00101 0.92141 0.93456 1.22945 1.00469 1.00451 0.99706 1.21868 0.82929 0.93565 1.01751 1.86425 1.34464 1.70366 1.38741 0.93909 0.93880 0.89499 0.92341 0.92300 0.87871 0.87887 0.76061 0.90393 0.89319 0.89612 0.93209 0.89248 0.93301 0.79740 0.91607 0.88560 0.91340 0.90308 0.91182 0.94160 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.40 -3.34 10.70 -35.23 -0.38 -3.71 16 3 C 0.08 0.61 5.23 37.16 0.19 0.80 16 4 C -0.14 -0.95 6.07 -27.88 -0.17 -1.11 16 5 C 0.52 4.85 7.83 -10.99 -0.09 4.76 16 6 O -0.54 -7.15 15.98 5.55 0.09 -7.06 16 7 N -0.72 -5.80 5.45 -60.29 -0.33 -6.13 16 8 C 0.13 1.21 5.16 -4.04 -0.02 1.19 16 9 C 0.08 0.81 2.37 -27.71 -0.07 0.74 16 10 H 0.08 0.85 6.78 -51.93 -0.35 0.50 16 11 C 0.03 0.39 4.62 -4.54 -0.02 0.37 16 12 N -0.52 -7.77 4.48 -237.16 -1.06 -8.83 16 13 C 0.04 0.72 5.34 -4.98 -0.03 0.70 16 14 C 0.45 9.99 7.25 -10.99 -0.08 9.91 16 15 O -0.56 -14.48 14.18 5.55 0.08 -14.40 16 16 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 17 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 18 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 21 Si 0.88 19.19 27.74 -169.99 -4.71 14.47 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 25 C 0.05 0.71 4.59 -4.21 -0.02 0.69 16 26 C -0.20 -2.21 5.63 -26.84 -0.15 -2.36 16 27 C 0.08 0.70 6.43 38.06 0.24 0.95 16 28 O -0.38 -3.77 9.38 -21.72 -0.20 -3.97 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.06 0.50 8.10 -51.92 -0.42 0.08 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.40 2.45 8.36 -40.82 -0.34 2.11 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.84 8.13 -51.93 -0.42 0.42 16 39 H 0.09 0.91 7.74 -51.93 -0.40 0.51 16 40 H 0.05 0.57 7.12 -51.93 -0.37 0.20 16 41 H 0.09 1.29 8.04 -51.93 -0.42 0.87 16 42 H 0.05 0.71 7.58 -51.93 -0.39 0.32 16 43 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.10 1.74 5.86 -51.93 -0.30 1.44 16 46 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.84 6.69 -51.93 -0.35 0.49 16 49 H 0.04 0.34 7.72 -51.92 -0.40 -0.06 16 50 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -34.59 398.24 -7.24 -41.83 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -8.11 Total: 10.11 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 0.66 Total: 10.33 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.67 Total: -53.59 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.41 Total: -29.14 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.59 -7.24 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148970047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.826 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds