Wall clock time and date at job start Wed Apr 1 2020 02:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00096 * 2 1 4 4 C 1.50693 * 109.47330 * 179.97438 * 3 2 1 5 5 O 1.21288 * 119.99686 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00174 * 180.02562 * 4 3 2 7 7 C 1.46504 * 120.00070 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47343 * 34.99572 * 7 6 4 9 9 C 1.53011 * 109.46526 * 275.00087 * 7 6 4 10 10 C 1.50693 * 109.47049 * 155.00078 * 7 6 4 11 11 O 1.21274 * 120.00366 * 359.97438 * 10 7 6 12 12 N 1.34785 * 119.99706 * 179.97438 * 10 7 6 13 13 C 1.46498 * 119.99663 * 179.97438 * 12 10 7 14 14 C 1.53006 * 109.46791 * 180.02562 * 13 12 10 15 15 H 1.08999 * 108.45350 * 57.87439 * 14 13 12 16 16 C 1.46919 * 108.61886 * 175.75769 * 14 13 12 17 17 N 1.49896 * 106.62338 * 177.93437 * 16 14 13 18 18 C 1.36937 * 120.49372 * 111.40039 * 17 16 14 19 19 H 1.08001 * 120.00051 * 155.30993 * 18 17 16 20 20 C 1.38811 * 120.00022 * 335.30609 * 18 17 16 21 21 N 1.31614 * 120.00004 * 340.86507 * 20 18 17 22 22 Si 1.86799 * 119.99944 * 160.86761 * 20 18 17 23 23 H 1.48504 * 109.47185 * 90.00319 * 22 20 18 24 24 H 1.48499 * 109.47251 * 209.99595 * 22 20 18 25 25 H 1.48495 * 109.47289 * 330.00004 * 22 20 18 26 26 C 1.43428 * 118.87357 * 291.09372 * 17 16 14 27 27 C 1.55323 * 116.08867 * 89.55027 * 26 17 16 28 28 C 1.55192 * 108.87677 * 319.57310 * 27 26 17 29 29 O 1.39640 * 110.56596 * 322.14578 * 28 27 26 30 30 H 1.08995 * 109.47099 * 299.99529 * 1 2 3 31 31 H 1.09004 * 109.47106 * 59.99557 * 1 2 3 32 32 H 1.09007 * 109.47187 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46464 * 60.00050 * 3 2 1 34 34 H 1.08993 * 109.47379 * 300.00669 * 3 2 1 35 35 H 0.96992 * 120.00326 * 0.02562 * 6 4 3 36 36 H 1.08996 * 109.47498 * 60.00049 * 9 7 6 37 37 H 1.09006 * 109.46417 * 180.02562 * 9 7 6 38 38 H 1.08999 * 109.46889 * 299.99763 * 9 7 6 39 39 H 0.97001 * 120.00066 * 359.97438 * 12 10 7 40 40 H 1.08997 * 109.47145 * 60.00471 * 13 12 10 41 41 H 1.08994 * 109.47171 * 299.99835 * 13 12 10 42 42 H 1.09003 * 109.98705 * 297.23377 * 16 14 13 43 43 H 1.08999 * 109.99256 * 58.60484 * 16 14 13 44 44 H 0.97005 * 120.00063 * 179.97438 * 21 20 18 45 45 H 1.09005 * 108.11937 * 327.90086 * 26 17 16 46 46 H 1.09000 * 108.12953 * 211.21042 * 26 17 16 47 47 H 1.08999 * 109.56721 * 79.38848 * 27 26 17 48 48 H 1.08994 * 109.57265 * 199.75347 * 27 26 17 49 49 H 1.09000 * 109.25615 * 82.41831 * 28 27 26 50 50 H 1.08996 * 109.26096 * 201.86199 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0340 0.0915 0.0006 6 7 4.2764 2.2968 0.0013 7 6 5.7369 2.1812 0.0013 8 1 6.0327 1.3136 -0.5885 9 6 6.2352 2.0148 1.4384 10 6 6.3393 3.4254 -0.5984 11 8 5.6197 4.3205 -0.9880 12 7 7.6780 3.5436 -0.7018 13 6 8.2637 4.7530 -1.2854 14 6 9.7889 4.6321 -1.2852 15 1 10.0644 3.7393 -1.8465 16 6 10.3525 5.8062 -1.9652 17 7 11.8435 5.6681 -1.8945 18 6 12.5734 5.4264 -3.0276 19 1 13.6138 5.7131 -3.0711 20 6 11.9763 4.8129 -4.1202 21 7 10.8607 4.1322 -3.9643 22 14 12.7560 4.9536 -5.8118 23 1 13.7055 3.8298 -6.0142 24 1 11.6968 4.8998 -6.8512 25 1 13.4857 6.2427 -5.9149 26 6 12.4916 5.7999 -0.6218 27 6 12.6534 4.4925 0.2010 28 6 11.3567 3.6506 0.0661 29 8 10.2326 4.4789 0.0590 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8594 3.1725 0.0017 36 1 5.7994 1.1148 1.8722 37 1 7.3218 1.9292 1.4385 38 1 5.9393 2.8824 2.0282 39 1 8.2536 2.8278 -0.3899 40 1 7.9675 5.6208 -0.6961 41 1 7.9090 4.8707 -2.3093 42 1 10.0279 5.8258 -3.0055 43 1 10.0368 6.7179 -1.4580 44 1 10.4432 3.7037 -4.7279 45 1 11.9209 6.5094 -0.0225 46 1 13.4832 6.2209 -0.7882 47 1 13.5002 3.9227 -0.1817 48 1 12.8211 4.7392 1.2493 49 1 11.3914 3.0838 -0.8643 50 1 11.2883 2.9587 0.9055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149765902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:05 Heat of formation + Delta-G solvation = -126.771804 kcal Electronic energy + Delta-G solvation = -31192.203309 eV Core-core repulsion = 26835.173328 eV Total energy + Delta-G solvation = -4357.029981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.48318 -39.49035 -38.79862 -37.68508 -35.18093 -35.02116 -34.63070 -32.38713 -31.58946 -30.90843 -28.90034 -28.49642 -26.23909 -25.82634 -25.35680 -24.04918 -22.50603 -20.89105 -20.78641 -20.11981 -19.63242 -18.22729 -17.37012 -17.02610 -16.60720 -16.28030 -16.21209 -16.00994 -15.42322 -15.10384 -14.89588 -14.81875 -14.54509 -14.33056 -14.04111 -13.81651 -13.51235 -13.31132 -13.05568 -12.96398 -12.64531 -12.49679 -12.42366 -12.24537 -12.01830 -11.83371 -11.72569 -11.44833 -11.26371 -10.88672 -10.77539 -10.52845 -10.20180 -10.17859 -10.04562 -10.01854 -9.85652 -9.70814 -9.55022 -9.33450 -8.86619 -8.79533 -8.54067 -6.85441 -5.96142 -3.34664 2.34966 2.44370 2.66713 3.30567 3.35596 3.39290 3.41602 3.76618 4.40407 4.42974 4.60647 4.70790 4.75344 4.78835 4.90967 4.94691 4.99346 5.02712 5.19404 5.24897 5.29290 5.43188 5.59998 5.66970 5.78320 5.87691 5.93173 5.95718 6.08278 6.13371 6.28207 6.35296 6.40832 6.47334 6.58934 6.63250 6.66160 6.76990 6.84509 6.91726 7.07289 7.26820 7.27504 7.62890 7.68836 7.99046 8.08196 8.26540 8.29011 9.03735 9.71751 10.25426 11.13009 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.002298 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.037897 B =12179.408453 C =13124.085554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.045 3.955 4 C 0.517 3.483 5 O -0.520 6.520 6 N -0.710 5.710 7 C 0.126 3.874 8 H 0.115 0.885 9 C -0.159 4.159 10 C 0.508 3.492 11 O -0.547 6.547 12 N -0.705 5.705 13 C 0.121 3.879 14 C 0.060 3.940 15 H 0.108 0.892 16 C 0.144 3.856 17 N -0.587 5.587 18 C -0.249 4.249 19 H 0.069 0.931 20 C 0.002 3.998 21 N -0.908 5.908 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.161 3.839 27 C -0.172 4.172 28 C 0.067 3.933 29 O -0.370 6.370 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.410 0.590 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.403 0.597 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.019 0.981 44 H 0.255 0.745 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 -3.790 10.187 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.035 4.035 4 C 0.302 3.698 5 O -0.395 6.395 6 N -0.366 5.366 7 C 0.018 3.982 8 H 0.133 0.867 9 C -0.217 4.217 10 C 0.293 3.707 11 O -0.426 6.426 12 N -0.354 5.354 13 C -0.003 4.003 14 C 0.001 3.999 15 H 0.126 0.874 16 C 0.019 3.981 17 N -0.307 5.307 18 C -0.378 4.378 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.553 5.553 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.032 3.968 27 C -0.213 4.213 28 C -0.011 4.011 29 O -0.288 6.288 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.237 0.763 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.019 -4.069 9.904 18.445 hybrid contribution 0.446 0.165 -0.941 1.055 sum -14.573 -3.904 8.962 17.548 Atomic orbital electron populations 1.22848 0.80279 1.03360 1.00194 1.88015 1.19850 1.25148 1.95452 1.22201 0.91341 0.87051 1.02953 1.20222 0.88740 0.84370 0.76487 1.90744 1.74518 1.26397 1.47806 1.45602 1.05606 1.09652 1.75747 1.20777 0.80892 0.97841 0.98717 0.86738 1.22130 1.02173 1.03216 0.94197 1.20422 0.83092 0.88155 0.79069 1.90672 1.60490 1.41604 1.49790 1.45871 1.05862 1.21727 1.61978 1.21763 0.93792 0.86139 0.98607 1.22228 0.89955 1.04795 0.82926 0.87418 1.20698 0.83549 0.92684 1.01190 1.44027 1.02063 1.82446 1.02212 1.19247 0.95341 1.32252 0.90987 0.91345 1.24900 0.98163 0.97252 0.99262 1.69850 1.21058 1.34646 1.29760 0.86269 0.78307 0.77921 0.84103 1.21523 1.21531 1.20589 1.20373 0.96044 0.93493 0.86882 1.23577 0.97654 1.00843 0.99233 1.22349 0.86199 0.91981 1.00566 1.87509 1.44472 1.69802 1.27034 0.93769 0.93712 0.89046 0.90041 0.89895 0.75296 0.90895 0.90545 0.91692 0.76254 0.91800 0.90227 0.87826 0.96294 0.93448 0.95017 0.94872 0.92477 0.93184 0.91856 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.98 10.24 -55.14 -0.56 -4.54 16 3 C 0.04 0.38 6.42 36.00 0.23 0.62 16 4 C 0.52 6.19 7.87 -10.99 -0.09 6.10 16 5 O -0.52 -8.37 16.16 -14.36 -0.23 -8.60 16 6 N -0.71 -7.78 4.95 -54.93 -0.27 -8.05 16 7 C 0.13 1.50 2.98 -69.08 -0.21 1.29 16 8 H 0.11 1.44 7.58 -51.93 -0.39 1.04 16 9 C -0.16 -1.60 9.38 37.16 0.35 -1.26 16 10 C 0.51 7.32 7.22 -10.99 -0.08 7.24 16 11 O -0.55 -9.33 15.84 5.56 0.09 -9.25 16 12 N -0.70 -10.36 5.32 -60.30 -0.32 -10.69 16 13 C 0.12 2.09 5.24 -4.04 -0.02 2.07 16 14 C 0.06 1.15 1.94 -29.64 -0.06 1.10 16 15 H 0.11 2.36 5.21 -51.93 -0.27 2.09 16 16 C 0.14 3.14 4.71 -5.06 -0.02 3.12 16 17 N -0.59 -13.67 2.59 -174.70 -0.45 -14.13 16 18 C -0.25 -6.35 9.61 -15.06 -0.14 -6.49 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 21 N -0.91 -23.20 9.54 55.49 0.53 -22.67 16 22 Si 0.90 20.61 29.59 -169.99 -5.03 15.58 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.16 3.30 5.34 -4.43 -0.02 3.28 16 27 C -0.17 -3.10 6.75 -24.34 -0.16 -3.27 16 28 C 0.07 1.20 6.37 38.32 0.24 1.44 16 29 O -0.37 -6.84 9.54 -31.94 -0.30 -7.15 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.41 3.95 7.79 -40.82 -0.32 3.64 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.71 7.56 -51.93 -0.39 0.31 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.40 5.36 7.74 -40.82 -0.32 5.04 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.10 2.50 6.03 -51.93 -0.31 2.18 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 45 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 46 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 1.28 6.66 -51.93 -0.35 0.94 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 401.40 15.07 6.05 6.05 Total: -1.00 -31.09 401.40 -7.69 -38.78 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.22 Total: 8.16 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 1.04 Total: 16.50 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.52 Total: -55.53 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -1.01 Total: -29.54 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.09 -7.69 -38.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149765902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.994 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds