Wall clock time and date at job start Wed Apr 1 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 114.00189 * 2 1 4 4 C 1.50694 * 109.46959 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00146 * 0.02562 * 4 3 2 6 6 N 1.34784 * 120.00117 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00071 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47115 * 324.99342 * 7 6 4 9 9 C 1.53001 * 109.47193 * 84.99905 * 7 6 4 10 10 C 1.50703 * 109.47049 * 204.99602 * 7 6 4 11 11 O 1.21282 * 119.99848 * 0.02562 * 10 7 6 12 12 N 1.34774 * 119.99905 * 179.72021 * 10 7 6 13 13 C 1.46505 * 119.99766 * 180.02562 * 12 10 7 14 14 C 1.53003 * 109.46999 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.40153 * 305.00114 * 14 13 12 16 16 C 1.54289 * 109.40318 * 185.16129 * 14 13 12 17 17 N 1.48185 * 110.69221 * 200.49389 * 16 14 13 18 18 C 1.36931 * 118.51419 * 138.77651 * 17 16 14 19 19 H 1.08009 * 120.00172 * 206.12309 * 18 17 16 20 20 C 1.38813 * 120.00245 * 26.11891 * 18 17 16 21 21 N 1.31617 * 119.99891 * 15.50825 * 20 18 17 22 22 Si 1.86802 * 120.00041 * 195.51083 * 20 18 17 23 23 H 1.48507 * 109.47233 * 89.99813 * 22 20 18 24 24 H 1.48500 * 109.47166 * 209.99803 * 22 20 18 25 25 H 1.48494 * 109.47468 * 330.00094 * 22 20 18 26 26 C 1.44459 * 122.97049 * 318.79352 * 17 16 14 27 27 C 1.54867 * 109.32725 * 88.91662 * 26 17 16 28 28 C 1.47686 * 109.67977 * 290.09886 * 27 26 17 29 29 O 1.40526 * 109.40432 * 64.83718 * 14 13 12 30 30 H 1.09009 * 109.46501 * 59.99518 * 1 2 3 31 31 H 1.08997 * 109.47570 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47207 * 300.00380 * 1 2 3 33 33 H 1.09005 * 109.47034 * 59.99854 * 3 2 1 34 34 H 1.09001 * 109.47240 * 300.00015 * 3 2 1 35 35 H 0.96999 * 119.99696 * 0.02562 * 6 4 3 36 36 H 1.08993 * 109.47261 * 59.99804 * 9 7 6 37 37 H 1.08997 * 109.46820 * 180.02562 * 9 7 6 38 38 H 1.09000 * 109.46966 * 299.99443 * 9 7 6 39 39 H 0.96991 * 120.00197 * 0.02562 * 12 10 7 40 40 H 1.09004 * 109.46722 * 300.00345 * 13 12 10 41 41 H 1.08999 * 109.46913 * 60.00270 * 13 12 10 42 42 H 1.09002 * 109.23762 * 320.80190 * 16 14 13 43 43 H 1.08994 * 109.23627 * 80.21967 * 16 14 13 44 44 H 0.97006 * 119.99685 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.49148 * 208.87239 * 26 17 16 46 46 H 1.08996 * 109.49294 * 328.95864 * 26 17 16 47 47 H 1.09001 * 109.44181 * 50.16504 * 27 26 17 48 48 H 1.08999 * 109.43669 * 170.08235 * 27 26 17 49 49 H 1.09001 * 108.64675 * 181.87976 * 28 27 26 50 50 H 1.08997 * 108.64604 * 299.72176 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2766 2.2967 0.0013 7 6 5.7370 2.1809 0.0013 8 1 6.0326 1.3127 0.5904 9 6 6.2356 2.0160 -1.4357 10 6 6.3395 3.4246 0.6024 11 8 5.6198 4.3194 0.9927 12 7 7.6778 3.5399 0.7118 13 6 8.2635 4.7488 1.2966 14 6 9.7885 4.6253 1.3024 15 1 10.0756 3.7091 1.8183 16 6 10.3983 5.8387 2.0347 17 7 11.8179 6.0223 1.6516 18 6 12.2768 7.2938 1.4331 19 1 13.1172 7.4590 0.7751 20 6 11.6618 8.3705 2.0571 21 7 10.8547 8.1670 3.0767 22 14 11.9796 10.1082 1.4497 23 1 10.9801 10.4595 0.4091 24 1 11.8663 11.0580 2.5856 25 1 13.3450 10.1886 0.8716 26 6 12.7395 4.9206 1.4978 27 6 12.6800 4.4022 0.0397 28 6 11.3869 3.7289 -0.1964 29 8 10.2584 4.5826 -0.0213 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8595 3.1724 0.0017 36 1 5.9400 2.8841 -2.0248 37 1 7.3221 1.9294 -1.4356 38 1 5.7999 1.1164 -1.8705 39 1 8.2532 2.8227 0.4033 40 1 7.9717 5.6166 0.7050 41 1 7.9044 4.8685 2.3188 42 1 9.8369 6.7355 1.7728 43 1 10.3354 5.6774 3.1108 44 1 10.4253 8.9195 3.5130 45 1 13.7511 5.2585 1.7228 46 1 12.4635 4.1174 2.1810 47 1 12.7828 5.2414 -0.6482 48 1 13.4923 3.6948 -0.1272 49 1 11.3764 3.3419 -1.2153 50 1 11.3003 2.8892 0.4931 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149765903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:08 Heat of formation + Delta-G solvation = -157.193967 kcal Electronic energy + Delta-G solvation = -30814.711022 eV Core-core repulsion = 26456.361838 eV Total energy + Delta-G solvation = -4358.349185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.56552 -40.62876 -40.04079 -38.42541 -36.90393 -36.20180 -35.96457 -34.18365 -33.07986 -32.19220 -30.29445 -29.39033 -27.34787 -27.04140 -26.81187 -25.29242 -23.98069 -22.37855 -21.82511 -21.54356 -21.16363 -19.25333 -18.81887 -18.12876 -17.75494 -17.43394 -17.27792 -17.18110 -16.88984 -16.47324 -16.29314 -16.06006 -15.83534 -15.49542 -15.42907 -15.15213 -14.64485 -14.54271 -14.22149 -14.18201 -14.02027 -13.82183 -13.62513 -13.40429 -13.25749 -13.11886 -13.01868 -12.76257 -12.67330 -12.43287 -12.35274 -12.29758 -11.98132 -11.80025 -11.44429 -11.35290 -11.09005 -10.97599 -10.77071 -10.56289 -10.33786 -10.24954 -10.17725 -8.66733 -7.85806 -5.30408 1.41397 1.43863 1.46027 1.47077 1.54135 1.58725 2.18492 2.51533 2.93103 3.09437 3.27152 3.48165 3.58890 3.71429 3.98074 4.04844 4.07400 4.14125 4.19783 4.21910 4.26804 4.28407 4.47267 4.52122 4.58386 4.59590 4.62401 4.63813 4.75796 4.80150 4.87060 4.88482 4.90227 5.15548 5.16207 5.21548 5.22375 5.25736 5.35329 5.52956 5.62481 5.72051 6.01037 6.38912 6.40253 6.42949 6.58545 7.06014 7.10014 7.17706 7.94117 8.31277 9.18857 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.002106 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.956309 B =13293.772938 C =14250.477071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.045 3.955 4 C 0.516 3.484 5 O -0.565 6.565 6 N -0.706 5.706 7 C 0.133 3.867 8 H 0.117 0.883 9 C -0.153 4.153 10 C 0.512 3.488 11 O -0.573 6.573 12 N -0.700 5.700 13 C 0.137 3.863 14 C 0.076 3.924 15 H 0.075 0.925 16 C 0.172 3.828 17 N -0.602 5.602 18 C -0.259 4.259 19 H 0.061 0.939 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.959 3.041 23 H -0.290 1.290 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.147 3.853 27 C -0.170 4.170 28 C 0.067 3.933 29 O -0.375 6.375 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.417 0.583 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.416 0.584 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.011 0.989 44 H 0.248 0.752 45 H 0.040 0.960 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 -16.354 -8.553 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.035 4.035 4 C 0.303 3.697 5 O -0.443 6.443 6 N -0.361 5.361 7 C 0.025 3.975 8 H 0.135 0.865 9 C -0.211 4.211 10 C 0.298 3.702 11 O -0.452 6.452 12 N -0.352 5.352 13 C 0.013 3.987 14 C 0.015 3.985 15 H 0.092 0.908 16 C 0.046 3.954 17 N -0.324 5.324 18 C -0.389 4.389 19 H 0.079 0.921 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.789 3.211 23 H -0.217 1.217 24 H -0.221 1.221 25 H -0.195 1.195 26 C 0.020 3.980 27 C -0.211 4.211 28 C -0.009 4.009 29 O -0.294 6.294 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.857 -16.474 -8.311 23.689 hybrid contribution 0.316 1.702 0.200 1.743 sum -14.541 -14.771 -8.111 22.258 Atomic orbital electron populations 1.23043 0.78236 1.04227 1.01640 1.87952 1.22155 1.26477 1.95806 1.22336 0.88815 0.86905 1.05396 1.20835 0.90162 0.83591 0.75128 1.90710 1.75541 1.27945 1.50124 1.45634 1.05371 1.09995 1.75138 1.20738 0.81392 0.95823 0.99568 0.86547 1.22103 1.03043 1.03235 0.92751 1.20871 0.82597 0.88541 0.78224 1.90700 1.61103 1.42846 1.50600 1.45686 1.06348 1.20813 1.62334 1.21247 0.91415 0.87444 0.98635 1.22756 0.91851 0.99189 0.84661 0.90764 1.21386 0.84277 0.95478 0.94255 1.43808 1.05332 1.02443 1.80840 1.19445 1.14477 0.84694 1.20329 0.92119 1.25679 1.00823 1.01467 0.96464 1.70173 1.35230 1.30455 1.22139 0.85381 0.78064 0.80699 0.77005 1.21721 1.22140 1.19452 1.20915 0.92932 0.89617 0.94516 1.22145 0.99006 1.00760 0.99147 1.21586 0.85484 0.91256 1.02546 1.87452 1.46445 1.69263 1.26223 0.92133 0.88605 0.92423 0.87722 0.87083 0.74465 0.91557 0.89039 0.90999 0.74732 0.92715 0.90674 0.93814 0.97061 0.94255 0.94194 0.93638 0.93881 0.88648 0.88469 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -7.72 10.24 -129.94 -1.33 -9.05 16 3 C 0.04 0.63 6.42 71.23 0.46 1.08 16 4 C 0.52 10.76 7.87 87.65 0.69 11.45 16 5 O -0.57 -16.60 16.16 16.01 0.26 -16.34 16 6 N -0.71 -13.09 4.95 -446.10 -2.21 -15.30 16 7 C 0.13 2.58 2.98 44.25 0.13 2.71 16 8 H 0.12 2.28 7.58 -2.39 -0.02 2.26 16 9 C -0.15 -2.41 9.38 71.98 0.68 -1.73 16 10 C 0.51 12.63 7.22 87.66 0.63 13.27 16 11 O -0.57 -18.25 15.84 -3.04 -0.05 -18.30 16 12 N -0.70 -16.58 5.39 -463.04 -2.50 -19.07 16 13 C 0.14 4.33 5.24 86.38 0.45 4.78 16 14 C 0.08 2.55 2.35 31.03 0.07 2.62 16 15 H 0.07 2.14 7.20 -2.39 -0.02 2.12 16 16 C 0.17 7.98 4.50 86.49 0.39 8.37 16 17 N -0.60 -29.10 2.59 -696.47 -1.80 -30.90 16 18 C -0.26 -14.14 9.43 84.03 0.79 -13.35 16 19 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 20 C -0.05 -2.75 4.88 84.86 0.41 -2.34 16 21 N -0.93 -54.83 10.98 21.65 0.24 -54.60 16 22 Si 0.96 45.60 29.58 68.60 2.03 47.63 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.15 5.63 5.68 87.40 0.50 6.13 16 27 C -0.17 -5.19 6.03 29.57 0.18 -5.01 16 28 C 0.07 1.76 6.04 70.32 0.42 2.19 16 29 O -0.38 -12.58 9.77 -144.92 -1.42 -13.99 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.42 6.84 7.79 -92.71 -0.72 6.12 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.14 7.58 -2.39 -0.02 1.12 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.42 7.45 7.90 -92.72 -0.73 6.72 16 40 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 2.36 6.24 -2.39 -0.01 2.34 16 43 H 0.01 0.57 8.02 -2.39 -0.02 0.55 16 44 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 45 H 0.04 1.58 7.97 -2.39 -0.02 1.57 16 46 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 47 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 48 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.06 1.35 7.27 -2.39 -0.02 1.33 16 Total: -1.00 -77.71 405.38 -0.22 -77.93 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.50 Total: 20.34 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: 7.06 Total: 31.65 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -6.27 Total: -119.87 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -2.54 Total: -57.69 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -77.71 -0.22 -77.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149765903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.260 kcal (2) G-P(sol) polarization free energy of solvation -77.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds