Wall clock time and date at job start Wed Apr 1 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99708 * 2 1 4 4 C 1.50699 * 109.47099 * 179.97438 * 3 2 1 5 5 O 1.21290 * 120.00068 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00219 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99934 * 359.97438 * 6 4 3 8 8 C 1.46497 * 120.00354 * 180.02562 * 6 4 3 9 9 C 1.50704 * 109.47472 * 89.99917 * 8 6 4 10 10 O 1.21280 * 119.99803 * 359.97438 * 9 8 6 11 11 N 1.34779 * 120.00121 * 180.02562 * 9 8 6 12 12 C 1.46496 * 119.99975 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47071 * 179.97438 * 12 11 9 14 14 H 1.08997 * 108.57490 * 59.99497 * 13 12 11 15 15 C 1.46921 * 108.50845 * 177.88145 * 13 12 11 16 16 N 1.50116 * 106.77865 * 177.83443 * 15 13 12 17 17 C 1.36944 * 120.63285 * 111.31885 * 16 15 13 18 18 H 1.07999 * 119.99276 * 155.71634 * 17 16 15 19 19 C 1.38807 * 120.00193 * 335.71928 * 17 16 15 20 20 N 1.31622 * 119.99912 * 340.61527 * 19 17 16 21 21 Si 1.86804 * 120.00000 * 160.61778 * 19 17 16 22 22 H 1.48500 * 109.47212 * 59.99648 * 21 19 17 23 23 H 1.48496 * 109.46810 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46768 * 299.99722 * 21 19 17 25 25 C 1.43420 * 118.73284 * 291.34632 * 16 15 13 26 26 C 1.55330 * 116.23876 * 89.34932 * 25 16 15 27 27 C 1.55182 * 108.87539 * 319.46872 * 26 25 16 28 28 O 1.39640 * 110.57371 * 322.14315 * 27 26 25 29 29 H 1.08996 * 109.46645 * 60.00541 * 1 2 3 30 30 H 1.09004 * 109.46469 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46859 * 300.00188 * 1 2 3 32 32 H 1.09001 * 109.47481 * 59.99661 * 3 2 1 33 33 H 1.09002 * 109.47012 * 299.99716 * 3 2 1 34 34 H 1.09001 * 109.47033 * 269.99846 * 7 6 4 35 35 H 1.09000 * 109.47123 * 29.99946 * 7 6 4 36 36 H 1.08998 * 109.47087 * 150.00360 * 7 6 4 37 37 H 1.09007 * 109.47323 * 329.99784 * 8 6 4 38 38 H 1.08994 * 109.47510 * 210.00089 * 8 6 4 39 39 H 0.96998 * 119.99496 * 359.97438 * 11 9 8 40 40 H 1.08994 * 109.47119 * 59.99413 * 12 11 9 41 41 H 1.09000 * 109.46692 * 299.99413 * 12 11 9 42 42 H 1.09000 * 109.99347 * 297.15161 * 15 13 12 43 43 H 1.08998 * 109.99218 * 58.52544 * 15 13 12 44 44 H 0.96996 * 119.99733 * 180.02562 * 20 19 17 45 45 H 1.09001 * 108.12615 * 327.60015 * 25 16 15 46 46 H 1.08992 * 107.96803 * 210.98803 * 25 16 15 47 47 H 1.08998 * 109.57029 * 199.65066 * 26 25 16 48 48 H 1.09005 * 109.56957 * 79.29101 * 26 25 16 49 49 H 1.09009 * 109.25886 * 201.86150 * 27 26 25 50 50 H 1.08998 * 109.25801 * 82.42568 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0342 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 3.6463 3.6195 -0.0014 8 6 5.7368 2.1813 0.0003 9 6 6.2377 2.1411 -1.4205 10 8 5.4520 2.2025 -2.3424 11 7 7.5586 2.0360 -1.6667 12 6 8.0455 1.9975 -3.0479 13 6 9.5707 1.8767 -3.0477 14 1 9.8461 0.9573 -2.5311 15 6 10.0317 1.7886 -4.4400 16 7 11.5309 1.7259 -4.3969 17 6 12.1919 0.5800 -4.7509 18 1 13.2139 0.6309 -5.0961 19 6 11.5482 -0.6469 -4.6661 20 7 10.4781 -0.7779 -3.9111 21 14 12.2009 -2.1122 -5.6235 22 1 13.5912 -2.4058 -5.1922 23 1 11.3421 -3.2955 -5.3636 24 1 12.1884 -1.8001 -7.0753 25 6 12.2578 2.8889 -3.9773 26 6 12.5359 3.0124 -2.4541 27 6 11.2724 2.5602 -1.6748 28 8 10.1141 2.9808 -2.3316 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.4909 3.9466 -1.0295 35 1 2.6862 3.5652 0.5118 36 1 4.2932 4.3307 0.5122 37 1 6.0289 1.2656 0.5145 38 1 6.1693 3.0400 0.5138 39 1 8.1869 1.9866 -0.9294 40 1 7.7540 2.9135 -3.5615 41 1 7.6128 1.1392 -3.5618 42 1 9.6344 0.8878 -4.9078 43 1 9.7115 2.6703 -4.9950 44 1 10.0285 -1.6353 -3.8516 45 1 11.6990 3.7701 -4.2925 46 1 13.2151 2.8931 -4.4983 47 1 12.7652 4.0491 -2.2078 48 1 13.3787 2.3761 -2.1840 49 1 11.2943 2.9906 -0.6736 50 1 11.2674 1.4730 -1.5980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149803669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:45 Heat of formation + Delta-G solvation = -112.532181 kcal Electronic energy + Delta-G solvation = -31370.032996 eV Core-core repulsion = 27013.620492 eV Total energy + Delta-G solvation = -4356.412504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.39743 -39.35281 -38.60815 -37.58950 -35.59212 -34.99914 -34.43118 -32.21531 -31.27100 -30.29306 -28.78057 -28.06295 -26.73116 -25.91078 -25.33274 -24.74273 -22.55178 -20.79857 -20.54833 -19.61789 -19.43750 -17.64427 -17.39740 -17.04250 -16.91041 -16.39835 -16.09323 -15.91006 -15.27294 -15.01324 -14.92315 -14.76480 -14.42052 -14.30680 -13.98406 -13.74285 -13.36464 -13.16325 -13.07462 -12.93856 -12.83046 -12.60211 -12.48303 -12.34755 -11.98702 -11.81547 -11.70200 -11.39002 -11.20395 -10.82784 -10.73505 -10.48676 -10.17823 -10.10787 -10.01084 -9.93879 -9.88595 -9.67267 -9.50785 -8.85994 -8.77261 -8.65795 -8.48068 -6.81310 -5.90600 -3.29611 2.31633 2.53505 2.87221 3.35633 3.43390 3.43995 3.49794 3.71106 4.32274 4.45130 4.62015 4.68697 4.80441 4.84961 4.96630 4.97118 5.01163 5.05136 5.18998 5.24948 5.29689 5.29847 5.35543 5.45442 5.71747 5.81439 5.91708 6.00410 6.05931 6.16034 6.33273 6.42407 6.47854 6.57356 6.65710 6.66573 6.70738 6.81534 6.92833 6.95858 7.08922 7.12459 7.33405 7.72915 7.80707 8.01175 8.13046 8.33474 8.49483 9.08172 9.76355 10.30479 11.18426 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.002519 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.493546 B =11112.877112 C =12489.748456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.519 3.481 5 O -0.511 6.511 6 N -0.600 5.600 7 C 0.077 3.923 8 C 0.098 3.902 9 C 0.493 3.507 10 O -0.542 6.542 11 N -0.712 5.712 12 C 0.123 3.877 13 C 0.061 3.939 14 H 0.108 0.892 15 C 0.143 3.857 16 N -0.587 5.587 17 C -0.252 4.252 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.161 3.839 26 C -0.172 4.172 27 C 0.067 3.933 28 O -0.370 6.370 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.400 0.600 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.019 0.981 44 H 0.257 0.743 45 H 0.031 0.969 46 H 0.032 0.968 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.051 0.949 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 10.151 11.817 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.032 4.032 4 C 0.306 3.694 5 O -0.385 6.385 6 N -0.335 5.335 7 C -0.066 4.066 8 C -0.029 4.029 9 C 0.277 3.723 10 O -0.419 6.419 11 N -0.363 5.363 12 C -0.001 4.001 13 C 0.002 3.998 14 H 0.125 0.875 15 C 0.018 3.982 16 N -0.307 5.307 17 C -0.381 4.381 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.552 5.552 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.032 3.968 26 C -0.213 4.213 27 C -0.011 4.011 28 O -0.289 6.289 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.234 0.766 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.258 9.444 11.131 21.116 hybrid contribution 0.634 -0.659 -0.073 0.918 sum -14.624 8.784 11.058 20.330 Atomic orbital electron populations 1.22840 0.80364 1.03382 1.00048 1.88036 1.19782 1.25223 1.95391 1.22246 0.91490 0.86964 1.02455 1.20208 0.88769 0.84083 0.76357 1.90759 1.74355 1.26121 1.47260 1.47261 1.05317 1.06576 1.74346 1.21895 0.98414 0.83493 1.02760 1.21338 0.80651 1.05694 0.95193 1.21018 0.82772 0.76798 0.91712 1.90671 1.55328 1.49859 1.46058 1.45883 1.06742 1.73724 1.09914 1.21688 0.94763 1.01815 0.81857 1.22199 0.89443 0.90177 0.97962 0.87496 1.20747 0.83985 1.00129 0.93326 1.44103 1.00954 1.10601 1.75091 1.19207 0.98054 0.84118 1.36700 0.91350 1.24907 0.98585 0.97278 0.98734 1.69843 1.22286 1.24547 1.38482 0.86335 0.78054 0.81936 0.80244 1.21044 1.21600 1.21091 1.20371 0.95289 0.90003 0.91126 1.23584 0.97792 0.99160 1.00802 1.22342 0.85752 0.99630 0.93350 1.87500 1.39911 1.35825 1.65616 0.93733 0.89042 0.93884 0.90302 0.89969 0.91728 0.90995 0.90567 0.86810 0.87317 0.76574 0.92129 0.90466 0.87834 0.96314 0.93302 0.95061 0.94921 0.93225 0.92502 0.93113 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.37 -4.55 10.24 -55.14 -0.56 -5.11 16 3 C 0.05 0.48 4.97 36.01 0.18 0.66 16 4 C 0.52 7.21 7.75 -10.99 -0.09 7.13 16 5 O -0.51 -9.63 16.08 -14.36 -0.23 -9.86 16 6 N -0.60 -6.82 2.36 -182.95 -0.43 -7.25 16 7 C 0.08 0.54 10.28 59.85 0.62 1.15 16 8 C 0.10 1.14 5.93 -5.19 -0.03 1.11 16 9 C 0.49 7.88 7.90 -10.98 -0.09 7.79 16 10 O -0.54 -10.70 16.43 5.56 0.09 -10.61 16 11 N -0.71 -11.36 5.41 -60.30 -0.33 -11.69 16 12 C 0.12 2.30 5.24 -4.05 -0.02 2.28 16 13 C 0.06 1.24 1.98 -29.65 -0.06 1.18 16 14 H 0.11 2.46 5.24 -51.93 -0.27 2.19 16 15 C 0.14 3.26 4.70 -4.93 -0.02 3.24 16 16 N -0.59 -14.09 2.61 -174.51 -0.46 -14.55 16 17 C -0.25 -6.58 9.61 -15.06 -0.14 -6.73 16 18 H 0.07 1.79 7.87 -52.49 -0.41 1.37 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.91 -24.08 9.57 55.49 0.53 -23.55 16 21 Si 0.90 21.20 29.60 -169.99 -5.03 16.16 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.16 3.39 5.33 -4.44 -0.02 3.36 16 26 C -0.17 -3.18 6.75 -24.34 -0.16 -3.34 16 27 C 0.07 1.23 6.38 38.31 0.24 1.47 16 28 O -0.37 -7.07 9.44 -31.93 -0.30 -7.37 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.50 7.40 -51.93 -0.38 0.12 16 33 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.30 6.44 -51.93 -0.33 -0.03 16 36 H 0.08 0.38 7.89 -51.93 -0.41 -0.03 16 37 H 0.11 1.37 7.42 -51.93 -0.39 0.98 16 38 H 0.11 0.83 7.89 -51.93 -0.41 0.42 16 39 H 0.40 5.59 8.26 -40.82 -0.34 5.25 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.10 2.61 6.03 -51.93 -0.31 2.30 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.03 0.64 7.99 -51.93 -0.41 0.23 16 46 H 0.03 0.68 7.95 -51.93 -0.41 0.26 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 50 H 0.06 1.31 6.66 -51.93 -0.35 0.97 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -34.75 400.72 -7.47 -42.22 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.22 Total: 4.92 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 1.43 Total: 20.63 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.68 Total: -57.03 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.01 Total: -32.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.75 -7.47 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149803669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.312 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds