Wall clock time and date at job start Wed Apr 1 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99827 * 2 1 4 4 C 1.50697 * 109.47258 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99777 * 0.27056 * 4 3 2 6 6 N 1.34769 * 120.00268 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00380 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47289 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.46922 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99781 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99618 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99723 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47027 * 179.97438 * 12 11 9 14 14 H 1.09001 * 108.56798 * 57.94431 * 13 12 11 15 15 C 1.46919 * 108.61867 * 175.75204 * 13 12 11 16 16 N 1.50110 * 106.77907 * 177.91512 * 15 13 12 17 17 C 1.36940 * 120.63222 * 111.32477 * 16 15 13 18 18 H 1.08003 * 119.99702 * 155.70574 * 17 16 15 19 19 C 1.38811 * 120.00228 * 335.70500 * 17 16 15 20 20 N 1.31623 * 119.99882 * 340.68429 * 19 17 16 21 21 Si 1.86797 * 120.00078 * 160.68699 * 19 17 16 22 22 H 1.48503 * 109.47307 * 90.00093 * 21 19 17 23 23 H 1.48502 * 109.47216 * 209.99778 * 21 19 17 24 24 H 1.48496 * 109.47135 * 329.99767 * 21 19 17 25 25 C 1.43420 * 118.73309 * 291.35011 * 16 15 13 26 26 C 1.55335 * 116.23996 * 89.35201 * 25 16 15 27 27 C 1.55191 * 108.87142 * 319.47020 * 26 25 16 28 28 O 1.39648 * 110.56731 * 322.14058 * 27 26 25 29 29 H 1.08998 * 109.47067 * 299.99884 * 1 2 3 30 30 H 1.08992 * 109.47146 * 60.00129 * 1 2 3 31 31 H 1.09006 * 109.47032 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47586 * 59.99422 * 3 2 1 33 33 H 1.09001 * 109.46745 * 300.00070 * 3 2 1 34 34 H 0.97002 * 120.00117 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.46836 * 300.00145 * 7 6 4 36 36 H 1.08995 * 109.47001 * 59.99484 * 7 6 4 37 37 H 1.08998 * 109.46750 * 299.99625 * 8 7 6 38 38 H 1.09000 * 109.46735 * 60.00035 * 8 7 6 39 39 H 0.96999 * 120.00537 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.46547 * 299.99440 * 12 11 9 41 41 H 1.08995 * 109.47228 * 59.99342 * 12 11 9 42 42 H 1.09003 * 109.99361 * 297.24331 * 15 13 12 43 43 H 1.09000 * 109.98817 * 58.60442 * 15 13 12 44 44 H 0.97004 * 120.00022 * 180.02562 * 20 19 17 45 45 H 1.08996 * 108.12786 * 327.59757 * 25 16 15 46 46 H 1.08997 * 107.96614 * 210.98306 * 25 16 15 47 47 H 1.08993 * 109.57006 * 199.65551 * 26 25 16 48 48 H 1.08992 * 109.56936 * 79.28148 * 26 25 16 49 49 H 1.09001 * 109.25868 * 201.86058 * 27 26 25 50 50 H 1.08997 * 109.25882 * 82.42019 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 -0.0039 6 7 4.2764 2.2968 0.0002 7 6 5.7369 2.1813 0.0003 8 6 6.3591 3.5790 -0.0009 9 6 7.8614 3.4600 -0.0002 10 8 8.3830 2.3651 0.0016 11 7 8.6253 4.5704 -0.0005 12 6 10.0858 4.4548 -0.0004 13 6 10.7080 5.8525 -0.0014 14 1 10.3482 6.3933 0.8739 15 6 12.1673 5.7165 0.1018 16 7 12.7370 7.1041 0.0451 17 6 13.3268 7.6618 1.1479 18 1 14.0578 8.4480 1.0299 19 6 12.9852 7.2167 2.4176 20 7 11.8607 6.5584 2.6037 21 14 14.1213 7.5520 3.8620 22 1 13.7561 8.8478 4.4887 23 1 13.9851 6.4627 4.8621 24 1 15.5258 7.6118 3.3835 25 6 12.6513 7.8348 -1.1860 26 6 11.3727 8.6937 -1.3873 27 6 10.1463 7.8980 -0.8665 28 8 10.2767 6.5413 -1.1705 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8593 3.1726 -0.0009 35 1 6.0585 1.6407 0.8905 36 1 6.0585 1.6400 -0.8894 37 1 6.0375 4.1191 -0.8913 38 1 6.0374 4.1206 0.8887 39 1 8.2081 5.4461 -0.0015 40 1 10.4073 3.9142 0.8898 41 1 10.4074 3.9135 -0.8901 42 1 12.4315 5.2434 1.0476 43 1 12.5460 5.1239 -0.7309 44 1 11.6217 6.2477 3.4911 45 1 12.7139 7.1222 -2.0084 46 1 13.5163 8.4952 -1.2460 47 1 11.2428 8.9122 -2.4472 48 1 11.4672 9.6253 -0.8294 49 1 9.2413 8.2858 -1.3340 50 1 10.0721 8.0187 0.2142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149804455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:57 Heat of formation + Delta-G solvation = -157.405653 kcal Electronic energy + Delta-G solvation = -30289.004302 eV Core-core repulsion = 25930.645938 eV Total energy + Delta-G solvation = -4358.358364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.17752 -40.78705 -40.17502 -38.43309 -36.79980 -36.34049 -35.87881 -33.86331 -33.07795 -32.26397 -30.34281 -29.55699 -27.38394 -27.05439 -26.64079 -24.79377 -23.74270 -22.39109 -21.91321 -21.32861 -21.11674 -18.95600 -18.53840 -18.11649 -17.70847 -17.58231 -17.38334 -16.93618 -16.77237 -16.61205 -16.33967 -16.12305 -15.68508 -15.58461 -15.44611 -15.33000 -14.89674 -14.62730 -14.28746 -14.16527 -14.01700 -13.81115 -13.56307 -13.28240 -13.13991 -12.94019 -12.92995 -12.61438 -12.50268 -12.43672 -12.33577 -12.31263 -11.92202 -11.76256 -11.36709 -11.18022 -11.10174 -10.86847 -10.74473 -10.55090 -10.25636 -10.21276 -10.03621 -8.70925 -7.89746 -5.29577 1.46619 1.51848 1.54181 1.58567 1.66504 1.69621 2.36865 2.52615 3.13100 3.17132 3.27931 3.51830 3.60746 3.81680 3.99940 4.07295 4.19176 4.23072 4.29780 4.31519 4.39409 4.43943 4.52129 4.52691 4.59670 4.60374 4.75059 4.78628 4.81781 4.85563 4.89698 4.93358 4.99878 5.09567 5.19845 5.20938 5.31751 5.36023 5.41789 5.45812 5.52995 5.68813 6.06498 6.36754 6.53244 6.54205 6.61603 7.11246 7.22101 7.29117 7.83637 8.36431 9.16151 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018724 B = 0.001849 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.054112 B =15138.365665 C =15890.930475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.048 3.952 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.708 5.708 7 C 0.141 3.859 8 C -0.133 4.133 9 C 0.507 3.493 10 O -0.594 6.594 11 N -0.705 5.705 12 C 0.132 3.868 13 C 0.081 3.919 14 H 0.087 0.913 15 C 0.143 3.857 16 N -0.601 5.601 17 C -0.263 4.263 18 H 0.062 0.938 19 C -0.036 4.036 20 N -0.916 5.916 21 Si 0.958 3.042 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.281 1.281 25 C 0.153 3.847 26 C -0.166 4.166 27 C 0.068 3.932 28 O -0.366 6.366 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.425 0.575 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.414 0.586 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.021 0.979 44 H 0.251 0.749 45 H 0.033 0.967 46 H 0.029 0.971 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.090 0.910 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.166 0.374 -6.266 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.032 4.032 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.016 3.984 8 C -0.173 4.173 9 C 0.295 3.705 10 O -0.475 6.475 11 N -0.356 5.356 12 C 0.007 3.993 13 C 0.022 3.978 14 H 0.105 0.895 15 C 0.018 3.982 16 N -0.322 5.322 17 C -0.393 4.393 18 H 0.080 0.920 19 C -0.233 4.233 20 N -0.561 5.561 21 Si 0.787 3.213 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.206 1.206 25 C 0.025 3.975 26 C -0.207 4.207 27 C -0.009 4.009 28 O -0.285 6.285 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.250 0.750 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.040 0.960 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.108 0.892 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.363 -1.477 -6.308 23.283 hybrid contribution 0.711 1.041 1.219 1.753 sum -21.652 -0.436 -5.089 22.247 Atomic orbital electron populations 1.23030 0.78170 1.04064 1.01805 1.87975 1.22263 1.27131 1.95843 1.22401 0.88210 0.86716 1.05827 1.21135 0.90606 0.83945 0.75383 1.90747 1.76010 1.29087 1.50323 1.45607 1.05988 1.09555 1.75174 1.20777 0.79222 0.96653 1.01747 1.21731 0.88999 0.98050 1.08520 1.21118 0.90821 0.83500 0.75084 1.90727 1.76398 1.28420 1.52001 1.45784 1.06358 1.09541 1.73887 1.21331 0.80326 0.96945 1.00742 1.21717 0.96013 0.91911 0.88126 0.89518 1.20677 0.92023 0.86053 0.99419 1.44210 1.67981 1.11066 1.08980 1.19382 1.16057 1.18623 0.85204 0.91999 1.25452 0.97398 1.01379 0.99052 1.69977 1.21403 1.43061 1.21700 0.85439 0.79321 0.76804 0.79733 1.21366 1.22094 1.20605 1.20499 0.95285 0.93883 0.87791 1.23498 0.97418 0.98947 1.00791 1.22410 0.97323 0.82079 0.99130 1.87516 1.86786 1.19505 1.34683 0.92058 0.91974 0.89131 0.86802 0.86662 0.73673 0.93280 0.93023 0.84405 0.84766 0.74987 0.92340 0.92674 0.90478 0.96046 0.93969 0.94814 0.95253 0.90353 0.92760 0.89195 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.85 10.24 -129.94 -1.33 -9.18 16 3 C 0.05 0.55 6.42 71.24 0.46 1.01 16 4 C 0.50 10.45 7.91 87.66 0.69 11.14 16 5 O -0.58 -19.99 16.50 16.01 0.26 -19.72 16 6 N -0.71 -9.94 5.56 -463.07 -2.57 -12.51 16 7 C 0.14 2.97 4.96 86.38 0.43 3.40 16 8 C -0.13 -2.00 5.81 29.85 0.17 -1.83 16 9 C 0.51 13.98 7.83 87.66 0.69 14.67 16 10 O -0.59 -22.65 15.98 -3.04 -0.05 -22.70 16 11 N -0.70 -19.61 5.43 -463.05 -2.52 -22.12 16 12 C 0.13 4.71 5.24 86.38 0.45 5.17 16 13 C 0.08 3.16 1.95 28.71 0.06 3.21 16 14 H 0.09 3.80 5.23 -2.39 -0.01 3.79 16 15 C 0.14 6.44 4.71 83.79 0.39 6.83 16 16 N -0.60 -28.29 2.61 -706.01 -1.84 -30.14 16 17 C -0.26 -13.56 9.61 84.03 0.81 -12.75 16 18 H 0.06 3.21 7.87 -2.91 -0.02 3.18 16 19 C -0.04 -1.87 4.92 84.86 0.42 -1.45 16 20 N -0.92 -47.38 9.56 21.65 0.21 -47.18 16 21 Si 0.96 42.67 29.60 68.60 2.03 44.70 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C 0.15 6.18 5.33 87.75 0.47 6.65 16 26 C -0.17 -5.57 6.75 32.15 0.22 -5.35 16 27 C 0.07 2.24 6.38 72.73 0.46 2.70 16 28 O -0.37 -12.96 9.54 -137.27 -1.31 -14.26 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.42 1.68 8.47 -92.71 -0.79 0.89 16 35 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 36 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 37 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.41 9.30 8.33 -92.71 -0.77 8.53 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.08 3.89 6.03 -2.39 -0.01 3.88 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 45 H 0.03 1.33 7.99 -2.39 -0.02 1.31 16 46 H 0.03 1.18 7.95 -2.39 -0.02 1.16 16 47 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.04 1.46 6.66 -2.39 -0.02 1.44 16 Total: -1.00 -78.51 404.04 -0.76 -79.27 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.60 Total: 18.97 kcal Atomic # 6 Polarization: 27.91 SS G_CDS: 6.96 Total: 34.88 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -6.73 Total: -111.94 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -2.42 Total: -65.87 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -78.51 -0.76 -79.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149804455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.135 kcal (2) G-P(sol) polarization free energy of solvation -78.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds