Wall clock time and date at job start Wed Apr 1 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00237 * 2 1 4 4 H 1.09006 * 109.46875 * 30.00107 * 3 2 1 5 5 C 1.50697 * 109.47179 * 270.00119 * 3 2 1 6 6 O 1.21274 * 120.00256 * 355.00278 * 5 3 2 7 7 N 1.34784 * 119.99610 * 174.99891 * 5 3 2 8 8 C 1.46505 * 119.99588 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.46752 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46945 * 179.97438 * 9 8 7 11 11 N 1.46893 * 109.47042 * 179.97438 * 10 9 8 12 12 C 1.46905 * 111.00004 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47246 * 180.02562 * 12 11 10 14 14 O 1.21296 * 119.99819 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99853 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99621 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99954 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99684 * 179.97438 * 16 15 13 19 19 N 1.31404 * 120.00308 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99705 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47085 * 90.00448 * 20 18 16 22 22 H 1.48500 * 109.46951 * 210.00305 * 20 18 16 23 23 H 1.48497 * 109.47309 * 330.00389 * 20 18 16 24 24 C 1.53000 * 109.47154 * 150.00041 * 3 2 1 25 25 H 1.08994 * 110.91148 * 182.13657 * 24 3 2 26 26 C 1.55457 * 110.92315 * 305.75410 * 24 3 2 27 27 C 1.54947 * 100.98961 * 152.22637 * 26 24 3 28 28 O 1.43650 * 105.13275 * 323.60678 * 27 26 24 29 29 C 1.43233 * 109.97542 * 24.42908 * 28 27 26 30 30 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46838 * 299.99809 * 1 2 3 32 32 H 1.08999 * 109.46853 * 59.99797 * 1 2 3 33 33 H 0.96994 * 120.00209 * 359.97438 * 7 5 3 34 34 H 1.09003 * 109.46921 * 299.99478 * 8 7 5 35 35 H 1.08997 * 109.47471 * 60.00044 * 8 7 5 36 36 H 1.08995 * 109.46689 * 299.99634 * 9 8 7 37 37 H 1.08997 * 109.47292 * 59.99695 * 9 8 7 38 38 H 1.09004 * 109.46735 * 300.00096 * 10 9 8 39 39 H 1.09004 * 109.47524 * 59.99422 * 10 9 8 40 40 H 1.00893 * 111.00154 * 303.95320 * 11 10 9 41 41 H 1.08993 * 109.47252 * 300.00184 * 12 11 10 42 42 H 1.09000 * 109.46594 * 60.00196 * 12 11 10 43 43 H 0.96991 * 119.99967 * 0.02562 * 15 13 12 44 44 H 0.97003 * 120.00450 * 179.97438 * 19 18 16 45 45 H 1.08999 * 111.05650 * 34.31250 * 26 24 3 46 46 H 1.09001 * 111.18400 * 270.19432 * 26 24 3 47 47 H 1.08996 * 110.31348 * 204.69266 * 27 26 24 48 48 H 1.08998 * 110.39377 * 82.56129 * 27 26 24 49 49 H 1.09002 * 109.83312 * 117.80151 * 29 28 27 50 50 H 1.08996 * 109.82720 * 238.68562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6590 3.0125 -1.6684 8 6 2.8571 3.4588 -3.0497 9 6 3.3632 4.9027 -3.0514 10 6 3.5707 5.3687 -4.4939 11 7 4.0560 6.7551 -4.4956 12 6 4.2676 7.2372 -5.8670 13 6 4.7648 8.6593 -5.8286 14 8 4.9274 9.2163 -4.7634 15 7 5.0288 9.3121 -6.9777 16 6 5.4807 10.6060 -6.9427 17 1 5.6254 11.1020 -5.9943 18 6 5.7533 11.2789 -8.1274 19 7 5.5777 10.6754 -9.2813 20 14 6.3697 13.0417 -8.0797 21 1 7.8538 13.0459 -8.0261 22 1 5.9164 13.7577 -9.2991 23 1 5.8289 13.7228 -6.8760 24 6 3.3590 1.2632 0.7212 25 1 3.8064 2.2559 0.7679 26 6 3.2085 0.6571 2.1449 27 6 4.6200 0.0556 2.3606 28 8 5.0167 -0.4414 1.0725 29 6 4.3153 0.2609 0.0398 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.8469 3.6154 -0.9323 34 1 3.5905 2.8165 -3.5374 35 1 1.9111 3.4044 -3.5884 36 1 2.6302 5.5451 -2.5636 37 1 4.3093 4.9568 -2.5128 38 1 4.3039 4.7260 -4.9813 39 1 2.6248 5.3145 -5.0329 40 1 3.4241 7.3600 -3.9928 41 1 5.0061 6.6078 -6.3635 42 1 3.3268 7.1955 -6.4159 43 1 4.8985 8.8668 -7.8295 44 1 5.7677 11.1452 -10.1084 45 1 2.4438 -0.1195 2.1611 46 1 2.9945 1.4311 2.8819 47 1 4.5778 -0.7589 3.0837 48 1 5.3134 0.8255 2.6989 49 1 5.0248 0.7969 -0.5906 50 1 3.7434 -0.4439 -0.5638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163359746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:31 Heat of formation + Delta-G solvation = -167.484460 kcal Electronic energy + Delta-G solvation = -29268.209771 eV Core-core repulsion = 24909.414358 eV Total energy + Delta-G solvation = -4358.795414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93144 -39.33309 -38.35410 -37.83673 -36.51783 -34.96584 -33.89236 -33.45352 -31.57681 -31.16318 -30.21894 -27.86466 -27.23638 -26.23917 -24.69032 -23.34847 -22.89406 -21.83452 -21.66299 -20.45393 -19.24895 -18.00456 -17.86285 -17.63826 -17.09425 -16.58054 -16.26813 -16.07282 -15.71446 -15.32088 -15.26731 -15.14874 -14.74678 -14.59833 -14.30345 -14.25406 -13.84894 -13.60488 -13.51009 -13.41647 -13.26903 -12.91235 -12.31515 -12.12621 -12.06737 -11.90563 -11.85826 -11.78948 -11.49681 -11.46771 -11.37383 -11.31119 -11.11198 -11.01056 -10.98160 -10.40799 -10.23486 -9.87878 -9.70801 -9.52673 -9.45198 -8.49903 -8.10683 -7.97891 -6.43223 -3.84254 2.15132 2.58137 3.16800 3.17512 3.25508 3.31131 3.46113 3.77187 3.88757 4.03440 4.08205 4.27063 4.28968 4.36170 4.59890 4.68372 4.75320 4.76580 4.84539 4.85256 4.91090 4.99105 4.99275 5.14318 5.21503 5.23974 5.25871 5.29541 5.37450 5.40082 5.43843 5.52280 5.57306 5.70544 5.76085 5.89983 5.95099 5.97415 6.06125 6.24602 6.43234 6.60217 7.06509 7.15440 7.53610 7.60640 7.79756 8.04527 8.59431 9.16093 9.52507 10.03757 10.74443 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023339 B = 0.001413 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.395834 B =19816.491734 C =20418.290490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.084 3.916 4 H 0.092 0.908 5 C 0.487 3.513 6 O -0.520 6.520 7 N -0.727 5.727 8 C 0.120 3.880 9 C -0.129 4.129 10 C 0.062 3.938 11 N -0.669 5.669 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.584 6.584 15 N -0.563 5.563 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C -0.119 4.119 25 H 0.103 0.897 26 C -0.148 4.148 27 C 0.051 3.949 28 O -0.381 6.381 29 C 0.058 3.942 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.349 0.651 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.061 0.939 49 H 0.068 0.932 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.971 -21.389 20.917 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.022 3.978 4 H 0.110 0.890 5 C 0.272 3.728 6 O -0.395 6.395 7 N -0.381 5.381 8 C -0.004 4.004 9 C -0.167 4.167 10 C -0.068 4.068 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.469 6.469 15 N -0.200 5.200 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.137 4.137 25 H 0.121 0.879 26 C -0.185 4.185 27 C -0.025 4.025 28 O -0.301 6.301 29 C -0.019 4.019 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.098 -22.014 20.794 31.620 hybrid contribution -0.982 1.540 -0.684 1.950 sum -10.080 -20.474 20.111 30.418 Atomic orbital electron populations 1.22902 0.80226 1.03539 1.00140 1.88000 1.20283 1.24320 1.94293 1.21853 0.96211 0.87432 0.92326 0.89010 1.21284 0.77565 0.81885 0.92066 1.90744 1.49325 1.53521 1.45866 1.46072 1.68077 1.14390 1.09530 1.21361 1.01525 0.95276 0.82236 1.21745 1.02511 0.94088 0.98366 1.21827 0.98541 0.91135 0.95291 1.60039 1.53351 1.01950 1.14849 1.21672 1.00244 0.96290 0.90004 1.19805 0.85017 0.87607 0.85017 1.90517 1.57796 1.68832 1.29737 1.41864 1.57934 1.13343 1.06823 1.19709 1.40361 0.88360 0.94593 0.87905 1.25267 0.97644 1.00378 0.94635 1.69609 1.48918 1.38169 0.97548 0.85848 0.78946 0.81672 0.77754 1.20368 1.20932 1.19440 1.22903 0.93604 1.01376 0.95861 0.87874 1.23322 0.98879 1.01417 0.94919 1.23358 0.93940 0.98790 0.86426 1.88424 1.65854 1.61244 1.14545 1.23152 0.93710 0.94345 0.90667 0.88949 0.93800 0.93518 0.76488 0.91048 0.91388 0.91258 0.90049 0.90724 0.95259 0.83212 0.89522 0.93813 0.77433 0.91846 0.89052 0.89660 0.89610 0.92068 0.91406 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.81 101.05 1.09 1.26 16 2 O -0.35 -3.00 8.03 -55.09 -0.44 -3.44 16 3 C 0.08 0.56 2.34 -27.88 -0.07 0.49 16 4 H 0.09 0.37 7.79 -51.93 -0.40 -0.03 16 5 C 0.49 4.49 6.50 -10.98 -0.07 4.42 16 6 O -0.52 -7.08 16.51 -14.30 -0.24 -7.32 16 7 N -0.73 -5.20 5.52 -60.29 -0.33 -5.53 16 8 C 0.12 1.01 5.68 -4.04 -0.02 0.99 16 9 C -0.13 -1.11 5.59 -26.73 -0.15 -1.26 16 10 C 0.06 0.70 5.68 -3.83 -0.02 0.67 16 11 N -0.67 -10.32 6.12 -115.06 -0.70 -11.03 16 12 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 13 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 14 O -0.58 -15.76 15.78 5.54 0.09 -15.67 16 15 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 16 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 20 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 C -0.12 -0.70 2.92 -88.59 -0.26 -0.96 16 25 H 0.10 0.41 8.06 -51.93 -0.42 -0.01 16 26 C -0.15 -0.73 6.56 -24.40 -0.16 -0.89 16 27 C 0.05 0.33 7.78 38.18 0.30 0.62 16 28 O -0.38 -3.85 11.36 -35.23 -0.40 -4.25 16 29 C 0.06 0.52 6.70 37.88 0.25 0.77 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 1.78 8.39 -40.82 -0.34 1.44 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.35 5.48 8.43 -39.30 -0.33 5.14 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.09 0.52 7.21 -51.93 -0.37 0.15 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.93 7.16 -51.93 -0.37 0.55 16 LS Contribution 414.73 15.07 6.25 6.25 Total: -1.00 -35.44 414.73 -8.01 -43.46 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -8.42 Total: 10.42 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 0.54 Total: 9.21 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.37 Total: -54.59 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.99 Total: -30.68 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.44 -8.01 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163359746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.026 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds