Wall clock time and date at job start Wed Apr 1 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00237 * 2 1 4 4 H 1.09006 * 109.46875 * 30.00107 * 3 2 1 5 5 C 1.50697 * 109.47179 * 270.00119 * 3 2 1 6 6 O 1.21274 * 120.00256 * 355.00278 * 5 3 2 7 7 N 1.34784 * 119.99610 * 174.99891 * 5 3 2 8 8 C 1.46505 * 119.99588 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.46752 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46945 * 179.97438 * 9 8 7 11 11 N 1.46893 * 109.47042 * 179.97438 * 10 9 8 12 12 C 1.46905 * 111.00004 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47246 * 180.02562 * 12 11 10 14 14 O 1.21296 * 119.99819 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99853 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99621 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99954 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99684 * 179.97438 * 16 15 13 19 19 N 1.31404 * 120.00308 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99705 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47085 * 90.00448 * 20 18 16 22 22 H 1.48500 * 109.46951 * 210.00305 * 20 18 16 23 23 H 1.48497 * 109.47309 * 330.00389 * 20 18 16 24 24 C 1.53000 * 109.47154 * 150.00041 * 3 2 1 25 25 H 1.08994 * 110.91148 * 182.13657 * 24 3 2 26 26 C 1.55457 * 110.92315 * 305.75410 * 24 3 2 27 27 C 1.54947 * 100.98961 * 152.22637 * 26 24 3 28 28 O 1.43650 * 105.13275 * 323.60678 * 27 26 24 29 29 C 1.43233 * 109.97542 * 24.42908 * 28 27 26 30 30 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46838 * 299.99809 * 1 2 3 32 32 H 1.08999 * 109.46853 * 59.99797 * 1 2 3 33 33 H 0.96994 * 120.00209 * 359.97438 * 7 5 3 34 34 H 1.09003 * 109.46921 * 299.99478 * 8 7 5 35 35 H 1.08997 * 109.47471 * 60.00044 * 8 7 5 36 36 H 1.08995 * 109.46689 * 299.99634 * 9 8 7 37 37 H 1.08997 * 109.47292 * 59.99695 * 9 8 7 38 38 H 1.09004 * 109.46735 * 300.00096 * 10 9 8 39 39 H 1.09004 * 109.47524 * 59.99422 * 10 9 8 40 40 H 1.00893 * 111.00154 * 303.95320 * 11 10 9 41 41 H 1.08993 * 109.47252 * 300.00184 * 12 11 10 42 42 H 1.09000 * 109.46594 * 60.00196 * 12 11 10 43 43 H 0.96991 * 119.99967 * 0.02562 * 15 13 12 44 44 H 0.97003 * 120.00450 * 179.97438 * 19 18 16 45 45 H 1.08999 * 111.05650 * 34.31250 * 26 24 3 46 46 H 1.09001 * 111.18400 * 270.19432 * 26 24 3 47 47 H 1.08996 * 110.31348 * 204.69266 * 27 26 24 48 48 H 1.08998 * 110.39377 * 82.56129 * 27 26 24 49 49 H 1.09002 * 109.83312 * 117.80151 * 29 28 27 50 50 H 1.08996 * 109.82720 * 238.68562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6590 3.0125 -1.6684 8 6 2.8571 3.4588 -3.0497 9 6 3.3632 4.9027 -3.0514 10 6 3.5707 5.3687 -4.4939 11 7 4.0560 6.7551 -4.4956 12 6 4.2676 7.2372 -5.8670 13 6 4.7648 8.6593 -5.8286 14 8 4.9274 9.2163 -4.7634 15 7 5.0288 9.3121 -6.9777 16 6 5.4807 10.6060 -6.9427 17 1 5.6254 11.1020 -5.9943 18 6 5.7533 11.2789 -8.1274 19 7 5.5777 10.6754 -9.2813 20 14 6.3697 13.0417 -8.0797 21 1 7.8538 13.0459 -8.0261 22 1 5.9164 13.7577 -9.2991 23 1 5.8289 13.7228 -6.8760 24 6 3.3590 1.2632 0.7212 25 1 3.8064 2.2559 0.7679 26 6 3.2085 0.6571 2.1449 27 6 4.6200 0.0556 2.3606 28 8 5.0167 -0.4414 1.0725 29 6 4.3153 0.2609 0.0398 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.8469 3.6154 -0.9323 34 1 3.5905 2.8165 -3.5374 35 1 1.9111 3.4044 -3.5884 36 1 2.6302 5.5451 -2.5636 37 1 4.3093 4.9568 -2.5128 38 1 4.3039 4.7260 -4.9813 39 1 2.6248 5.3145 -5.0329 40 1 3.4241 7.3600 -3.9928 41 1 5.0061 6.6078 -6.3635 42 1 3.3268 7.1955 -6.4159 43 1 4.8985 8.8668 -7.8295 44 1 5.7677 11.1452 -10.1084 45 1 2.4438 -0.1195 2.1611 46 1 2.9945 1.4311 2.8819 47 1 4.5778 -0.7589 3.0837 48 1 5.3134 0.8255 2.6989 49 1 5.0248 0.7969 -0.5906 50 1 3.7434 -0.4439 -0.5638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163359746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:30 Heat of formation + Delta-G solvation = -196.583647 kcal Electronic energy + Delta-G solvation = -29269.471607 eV Core-core repulsion = 24909.414358 eV Total energy + Delta-G solvation = -4360.057249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55362 -40.17131 -39.96930 -38.45417 -37.54535 -36.12253 -35.66600 -34.07293 -33.28737 -32.35899 -30.77096 -28.83060 -28.06643 -27.13628 -26.14556 -24.43399 -23.52398 -22.60536 -22.25407 -21.17543 -20.97785 -19.90707 -18.54466 -18.25138 -17.84737 -17.65763 -17.25897 -16.99412 -16.64461 -16.46366 -16.21439 -16.01703 -15.92738 -15.70236 -15.37157 -15.32760 -15.01435 -14.80300 -14.32532 -14.29635 -14.07952 -13.77002 -13.56246 -13.37111 -13.19572 -12.87350 -12.79519 -12.68546 -12.57108 -12.42820 -12.41316 -12.28149 -12.11538 -11.90361 -11.83557 -11.76141 -11.59483 -11.50721 -10.52735 -10.39156 -10.32550 -10.15641 -10.02085 -9.34026 -8.46851 -5.95911 1.38476 1.42359 1.47100 1.55087 1.96498 2.04715 2.29486 2.68259 2.91789 2.94410 3.20499 3.29382 3.51882 3.57404 3.78970 3.86846 4.00313 4.12839 4.14954 4.18208 4.27427 4.29972 4.33393 4.39758 4.46808 4.47902 4.53592 4.56081 4.58613 4.69956 4.74031 4.78362 4.82723 4.85072 4.91198 4.96880 5.15152 5.20261 5.25738 5.38707 5.40756 5.87836 5.95405 6.02906 6.09100 6.41469 6.50218 6.59516 7.12055 7.16705 7.55761 8.10625 8.70458 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023339 B = 0.001413 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.395834 B =19816.491734 C =20418.290490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.087 3.913 4 H 0.129 0.871 5 C 0.485 3.515 6 O -0.572 6.572 7 N -0.713 5.713 8 C 0.126 3.874 9 C -0.114 4.114 10 C 0.062 3.938 11 N -0.683 5.683 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.623 6.623 15 N -0.573 5.573 16 C -0.336 4.336 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.994 3.006 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.112 4.112 25 H 0.130 0.870 26 C -0.138 4.138 27 C 0.040 3.960 28 O -0.412 6.412 29 C 0.056 3.944 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.417 0.583 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.346 0.654 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.093 0.907 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 -20.706 22.370 32.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.025 3.975 4 H 0.146 0.854 5 C 0.271 3.729 6 O -0.450 6.450 7 N -0.367 5.367 8 C 0.002 3.998 9 C -0.152 4.152 10 C -0.068 4.068 11 N -0.315 5.315 12 C -0.069 4.069 13 C 0.225 3.775 14 O -0.509 6.509 15 N -0.211 5.211 16 C -0.465 4.465 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.818 3.182 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.131 4.131 25 H 0.148 0.852 26 C -0.175 4.175 27 C -0.035 4.035 28 O -0.332 6.332 29 C -0.021 4.021 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.255 0.745 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.165 0.835 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.135 0.865 47 H 0.111 0.889 48 H 0.093 0.907 49 H 0.080 0.920 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.707 -21.335 22.265 32.329 hybrid contribution -0.789 1.252 -1.105 1.847 sum -10.495 -20.083 21.160 31.004 Atomic orbital electron populations 1.23020 0.79248 1.04123 1.00727 1.87985 1.21536 1.25625 1.94246 1.22001 0.97223 0.87513 0.90732 0.85405 1.21857 0.76529 0.81722 0.92804 1.90721 1.51735 1.54990 1.47600 1.45944 1.67005 1.14158 1.09615 1.21188 1.00825 0.94906 0.82896 1.21583 1.02838 0.94022 0.96793 1.21913 0.98975 0.88677 0.97204 1.60038 1.54214 1.03710 1.13555 1.21533 1.01398 0.92095 0.91827 1.20884 0.83237 0.89630 0.83793 1.90483 1.59015 1.70443 1.30996 1.41944 1.58536 1.12948 1.07629 1.19690 1.42623 0.89957 0.94248 0.90199 1.26054 0.97162 1.04098 0.93971 1.69670 1.48879 1.39590 0.97983 0.84911 0.78510 0.76870 0.77937 1.19701 1.19575 1.19658 1.22965 0.92427 1.01768 0.95895 0.85219 1.23301 0.97540 1.01884 0.94780 1.23626 0.95256 0.99613 0.85027 1.88389 1.66460 1.62207 1.16165 1.23076 0.93964 0.94361 0.90702 0.88599 0.91040 0.94911 0.74544 0.92282 0.92002 0.90068 0.90080 0.90532 0.94141 0.83521 0.87954 0.91553 0.76986 0.91298 0.89900 0.86485 0.88914 0.90715 0.91998 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.81 113.37 1.23 1.50 16 2 O -0.38 -6.17 8.03 -129.99 -1.04 -7.22 16 3 C 0.09 1.00 2.34 29.85 0.07 1.07 16 4 H 0.13 0.55 7.79 -2.38 -0.02 0.53 16 5 C 0.48 8.55 6.50 87.65 0.57 9.12 16 6 O -0.57 -15.98 16.51 15.98 0.26 -15.72 16 7 N -0.71 -8.97 5.52 -463.04 -2.55 -11.52 16 8 C 0.13 1.98 5.68 86.38 0.49 2.47 16 9 C -0.11 -1.73 5.59 30.60 0.17 -1.56 16 10 C 0.06 1.26 5.68 86.30 0.49 1.75 16 11 N -0.68 -20.01 6.12 -517.93 -3.17 -23.18 16 12 C 0.06 2.13 6.17 85.56 0.53 2.66 16 13 C 0.44 20.54 7.82 87.66 0.69 21.23 16 14 O -0.62 -34.01 15.78 -3.08 -0.05 -34.05 16 15 N -0.57 -29.29 5.29 -306.98 -1.62 -30.91 16 16 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 17 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 19 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 20 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 C -0.11 -1.09 2.92 -9.48 -0.03 -1.12 16 25 H 0.13 0.57 8.06 -2.39 -0.02 0.56 16 26 C -0.14 -1.00 6.56 32.11 0.21 -0.79 16 27 C 0.04 0.45 7.78 72.65 0.57 1.02 16 28 O -0.41 -8.36 11.36 -148.98 -1.69 -10.06 16 29 C 0.06 1.01 6.70 72.45 0.49 1.50 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.38 8.08 -2.39 -0.02 0.36 16 32 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.42 2.48 8.39 -92.71 -0.78 1.70 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.35 10.42 8.43 -89.70 -0.76 9.67 16 41 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.40 19.23 7.90 -92.72 -0.73 18.50 16 44 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 45 H 0.08 0.78 7.21 -2.39 -0.02 0.76 16 46 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.05 1.29 7.16 -2.39 -0.02 1.27 16 Total: -1.00 -79.46 414.73 -2.12 -81.57 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -1.30 Total: 35.25 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 6.74 Total: 20.42 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -7.07 Total: -114.86 kcal Atomic # 8 Polarization: -64.52 SS G_CDS: -2.52 Total: -67.04 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -79.46 -2.12 -81.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163359746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.009 kcal (2) G-P(sol) polarization free energy of solvation -79.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds