Wall clock time and date at job start Wed Apr 1 2020 02:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.50705 * 110.75115 * 59.29916 * 4 3 2 6 6 O 1.21288 * 119.99975 * 120.69924 * 5 4 3 7 7 N 1.34773 * 119.99894 * 300.69707 * 5 4 3 8 8 C 1.46504 * 119.99640 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46673 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46938 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.47280 * 179.97438 * 10 9 8 12 12 C 1.46896 * 111.00236 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47273 * 180.02562 * 12 11 10 14 14 O 1.21298 * 119.99790 * 0.02562 * 13 12 11 15 15 N 1.34766 * 119.99986 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00161 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99926 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00434 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99689 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00145 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46673 * 90.00322 * 20 18 16 22 22 H 1.48498 * 109.47159 * 209.99789 * 20 18 16 23 23 H 1.48496 * 109.47237 * 330.00248 * 20 18 16 24 24 C 1.55306 * 110.84937 * 182.77060 * 4 3 2 25 25 C 1.55200 * 100.83079 * 152.17866 * 24 4 3 26 26 O 1.43647 * 105.25975 * 323.82006 * 25 24 4 27 27 C 1.43241 * 109.96971 * 24.28271 * 26 25 24 28 28 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 29 29 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 32 32 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 33 33 H 0.97000 * 120.00099 * 0.02562 * 7 5 4 34 34 H 1.08991 * 109.47479 * 300.00134 * 8 7 5 35 35 H 1.08995 * 109.47095 * 60.01053 * 8 7 5 36 36 H 1.09004 * 109.47250 * 300.00151 * 9 8 7 37 37 H 1.08994 * 109.47308 * 59.99958 * 9 8 7 38 38 H 1.09004 * 109.46989 * 299.99962 * 10 9 8 39 39 H 1.09004 * 109.46969 * 59.99919 * 10 9 8 40 40 H 1.00900 * 110.99711 * 56.04164 * 11 10 9 41 41 H 1.08998 * 109.47226 * 300.00402 * 12 11 10 42 42 H 1.09005 * 109.46956 * 60.00395 * 12 11 10 43 43 H 0.97002 * 120.00582 * 359.97438 * 15 13 12 44 44 H 0.97003 * 120.00274 * 180.02562 * 19 18 16 45 45 H 1.09006 * 111.12458 * 270.24894 * 24 4 3 46 46 H 1.09004 * 111.12543 * 34.40224 * 24 4 3 47 47 H 1.08993 * 110.37364 * 204.79587 * 25 24 4 48 48 H 1.09010 * 110.20963 * 82.75032 * 25 24 4 49 49 H 1.09004 * 109.82700 * 238.77456 * 27 26 25 50 50 H 1.09005 * 109.90490 * 117.84580 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0114 0.4250 -1.2108 6 8 4.7719 0.9505 -1.9959 7 7 3.5920 -0.8383 -1.4217 8 6 4.0543 -1.5765 -2.5996 9 6 3.4335 -2.9750 -2.6010 10 6 3.9168 -3.7463 -3.8309 11 7 3.3213 -5.0892 -3.8319 12 6 3.7635 -5.8602 -5.0015 13 6 3.1331 -7.2287 -4.9686 14 8 2.3883 -7.5316 -4.0604 15 7 3.3968 -8.1158 -5.9483 16 6 2.8229 -9.3605 -5.9187 17 1 2.1598 -9.6303 -5.1100 18 6 3.0952 -10.2754 -6.9284 19 7 3.9025 -9.9473 -7.9121 20 14 2.3139 -11.9716 -6.8876 21 1 1.0168 -11.9365 -7.6099 22 1 3.2190 -12.9494 -7.5431 23 1 2.0846 -12.3772 -5.4777 24 6 4.2009 2.5862 0.0708 25 6 5.5410 2.2379 0.7720 26 8 5.2162 1.2061 1.7171 27 6 4.0330 0.5150 1.2995 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 2.9835 -1.2585 -0.7939 34 1 3.7538 -1.0452 -3.5025 35 1 5.1406 -1.6610 -2.5722 36 1 3.7338 -3.5067 -1.6980 37 1 2.3473 -2.8903 -2.6285 38 1 3.6169 -3.2147 -4.7340 39 1 5.0032 -3.8309 -3.8029 40 1 2.3144 -5.0382 -3.7923 41 1 3.4618 -5.3434 -5.9125 42 1 4.8488 -5.9592 -4.9823 43 1 3.9921 -7.8734 -6.6748 44 1 4.0923 -10.5857 -8.6172 45 1 4.3695 2.9914 -0.9270 46 1 3.6088 3.2723 0.6764 47 1 5.9377 3.1123 1.2878 48 1 6.2629 1.8696 0.0430 49 1 3.2678 0.5920 2.0719 50 1 4.2630 -0.5336 1.1103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163380197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:39 Heat of formation + Delta-G solvation = -167.239849 kcal Electronic energy + Delta-G solvation = -29739.599075 eV Core-core repulsion = 25380.814269 eV Total energy + Delta-G solvation = -4358.784807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22868 -38.73691 -38.29284 -38.21797 -36.52447 -34.85793 -33.84854 -33.59540 -31.49437 -31.11675 -30.02944 -27.60503 -27.16259 -25.76300 -25.06114 -23.66844 -22.90547 -22.37769 -21.67854 -19.97475 -19.19930 -18.10957 -17.85523 -17.07469 -16.82899 -16.41539 -16.18355 -16.15453 -15.82114 -15.63182 -15.41714 -15.12851 -14.81878 -14.56803 -14.27165 -14.18196 -13.81615 -13.59217 -13.44492 -13.39969 -13.00965 -12.84692 -12.31275 -12.16888 -12.05853 -11.92136 -11.85518 -11.79133 -11.69150 -11.46868 -11.42026 -11.39473 -11.07210 -10.91824 -10.39140 -10.38459 -10.21485 -10.07746 -9.90560 -9.50611 -9.27133 -8.46482 -8.06327 -7.95541 -6.41263 -3.82151 2.22967 2.77315 3.03067 3.18106 3.26747 3.32891 3.42760 3.73245 3.91382 4.07590 4.18879 4.29535 4.35291 4.39717 4.61176 4.70677 4.78578 4.83251 4.84545 4.86747 4.95389 4.98653 5.08759 5.18372 5.22093 5.24561 5.26029 5.26943 5.33223 5.38829 5.44692 5.52150 5.56483 5.64672 5.80273 5.98444 6.01646 6.06248 6.23526 6.27688 6.43251 6.50554 7.20589 7.28027 7.55578 7.65664 7.94327 8.06794 8.61733 9.18240 9.54848 10.06269 10.76475 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.001544 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.181165 B =18135.033461 C =18714.969648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.080 3.920 4 C -0.117 4.117 5 C 0.530 3.470 6 O -0.540 6.540 7 N -0.713 5.713 8 C 0.120 3.880 9 C -0.128 4.128 10 C 0.063 3.937 11 N -0.669 5.669 12 C 0.050 3.950 13 C 0.441 3.559 14 O -0.584 6.584 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.131 4.131 25 C 0.052 3.948 26 O -0.381 6.381 27 C 0.072 3.928 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.349 0.651 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 27.882 15.242 31.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.120 4.120 5 C 0.315 3.685 6 O -0.418 6.418 7 N -0.366 5.366 8 C -0.004 4.004 9 C -0.166 4.166 10 C -0.067 4.067 11 N -0.301 5.301 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.468 6.468 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.169 4.169 25 C -0.024 4.024 26 O -0.301 6.301 27 C -0.005 4.005 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.168 0.832 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.711 27.412 15.707 31.640 hybrid contribution -1.154 -0.256 -1.271 1.736 sum -2.865 27.156 14.436 30.888 Atomic orbital electron populations 1.22801 0.79663 1.03574 1.00239 1.87718 1.20815 1.27201 1.95489 1.22393 0.89870 0.85651 1.01757 1.22462 0.95930 0.97859 0.95781 1.19891 0.80598 0.81946 0.86082 1.90700 1.35597 1.68503 1.46965 1.46044 1.49179 1.14028 1.27374 1.21345 0.99523 0.91666 0.87884 1.21727 1.01023 0.93614 1.00250 1.21831 1.00241 0.88924 0.95743 1.60055 1.14737 1.13262 1.42092 1.21673 1.00936 0.94070 0.91545 1.19813 0.86405 0.86461 0.84714 1.90519 1.40531 1.79194 1.36575 1.41865 1.42855 1.12827 1.22491 1.19710 1.25350 0.88823 1.09053 0.87913 1.25269 0.97077 1.00224 0.95409 1.69613 1.35875 1.36786 1.12027 0.85847 0.78569 0.81187 0.78618 1.20444 1.20918 1.19404 1.23228 0.96235 0.93762 1.03687 1.23463 0.96392 0.90929 0.91647 1.88420 1.44274 1.49431 1.47936 1.23125 0.87780 0.96443 0.93173 0.93779 0.88873 0.93700 0.92070 0.91461 0.75195 0.91540 0.91225 0.90108 0.91223 0.95304 0.90784 0.83218 0.93847 0.89534 0.77437 0.91873 0.87938 0.89410 0.89170 0.91258 0.89877 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.47 8.08 -35.23 -0.28 -2.75 16 3 C 0.08 0.45 4.73 37.16 0.18 0.62 16 4 C -0.12 -0.87 0.64 -153.71 -0.10 -0.97 16 5 C 0.53 5.52 6.31 -10.98 -0.07 5.45 16 6 O -0.54 -7.33 15.47 5.55 0.09 -7.24 16 7 N -0.71 -6.70 5.01 -60.29 -0.30 -7.01 16 8 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 9 C -0.13 -1.28 5.59 -26.73 -0.15 -1.43 16 10 C 0.06 0.75 5.69 -3.82 -0.02 0.73 16 11 N -0.67 -10.74 6.13 -115.05 -0.70 -11.44 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 C 0.44 10.50 7.82 -10.99 -0.09 10.41 16 14 O -0.58 -15.95 15.78 5.54 0.09 -15.87 16 15 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 16 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 17 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 20 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.13 -0.86 5.86 -24.34 -0.14 -1.00 16 25 C 0.05 0.41 7.56 38.32 0.29 0.70 16 26 O -0.38 -3.72 11.36 -35.23 -0.40 -4.12 16 27 C 0.07 0.57 6.79 37.88 0.26 0.82 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 33 H 0.41 3.40 6.47 -40.82 -0.26 3.13 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.10 0.75 7.30 -51.93 -0.38 0.37 16 46 H 0.09 0.38 8.04 -51.93 -0.42 -0.04 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.64 8.01 -51.92 -0.42 0.23 16 49 H 0.08 0.53 7.80 -51.93 -0.40 0.12 16 50 H 0.08 0.63 7.66 -51.93 -0.40 0.24 16 LS Contribution 411.07 15.07 6.19 6.19 Total: -1.00 -34.20 411.07 -7.07 -41.27 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -8.36 Total: 12.72 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 0.97 Total: 10.54 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.34 Total: -56.83 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.51 Total: -29.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.20 -7.07 -41.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163380197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.971 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds