Wall clock time and date at job start Wed Apr 1 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00261 * 2 1 4 4 C 1.52995 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.50707 * 110.45903 * 300.69999 * 4 3 2 6 6 O 1.21284 * 119.99637 * 237.39905 * 5 4 3 7 7 N 1.34771 * 119.99635 * 57.39483 * 5 4 3 8 8 C 1.46506 * 119.99534 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46719 * 179.97438 * 8 7 5 10 10 C 1.53008 * 109.46689 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.46622 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46990 * 180.02562 * 12 11 10 14 14 O 1.21287 * 119.99883 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99971 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00130 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99977 * 0.02562 * 16 15 13 18 18 C 1.38955 * 120.00248 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99876 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47362 * 90.00146 * 20 18 16 22 22 H 1.48502 * 109.47281 * 210.00539 * 20 18 16 23 23 H 1.48506 * 109.47254 * 330.00012 * 20 18 16 24 24 C 1.54510 * 110.51408 * 178.09417 * 4 3 2 25 25 C 1.54477 * 104.06715 * 241.21909 * 24 4 3 26 26 O 1.44426 * 104.80094 * 23.97325 * 25 24 4 27 27 C 1.44422 * 105.27893 * 319.49291 * 26 25 24 28 28 H 1.09001 * 109.47063 * 300.00053 * 1 2 3 29 29 H 1.08993 * 109.47157 * 59.99918 * 1 2 3 30 30 H 1.08998 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47212 * 59.99727 * 3 2 1 32 32 H 1.08998 * 109.46641 * 299.99856 * 3 2 1 33 33 H 0.97001 * 120.00679 * 0.02562 * 7 5 4 34 34 H 1.09006 * 109.47161 * 60.00417 * 8 7 5 35 35 H 1.08995 * 109.47163 * 299.99998 * 8 7 5 36 36 H 1.09006 * 109.46807 * 60.00391 * 9 8 7 37 37 H 1.08995 * 109.47458 * 300.00009 * 9 8 7 38 38 H 1.08990 * 109.46924 * 60.00331 * 10 9 8 39 39 H 1.09004 * 109.46978 * 300.00208 * 10 9 8 40 40 H 1.00896 * 111.00219 * 303.95583 * 11 10 9 41 41 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 42 42 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 43 43 H 0.97000 * 120.00083 * 0.02562 * 15 13 12 44 44 H 0.96998 * 120.00198 * 179.97438 * 19 18 16 45 45 H 1.09006 * 110.50573 * 359.86724 * 24 4 3 46 46 H 1.09001 * 110.51394 * 122.56408 * 24 4 3 47 47 H 1.09000 * 110.37231 * 142.80290 * 25 24 4 48 48 H 1.08998 * 110.37048 * 265.14434 * 25 24 4 49 49 H 1.09000 * 110.36879 * 281.68366 * 27 26 25 50 50 H 1.08997 * 110.37917 * 159.34139 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0041 0.4241 1.2131 6 8 4.7895 0.9354 1.9831 7 7 3.5505 -0.8240 1.4429 8 6 4.0057 -1.5630 2.6232 9 6 3.3442 -2.9425 2.6475 10 6 3.8191 -3.7140 3.8805 11 7 3.1845 -5.0387 3.9035 12 6 3.6185 -5.8100 5.0760 13 6 2.9488 -7.1600 5.0652 14 8 2.1856 -7.4511 4.1687 15 7 3.1989 -8.0441 6.0512 16 6 2.5893 -9.2721 6.0416 17 1 1.9090 -9.5310 5.2438 18 6 2.8475 -10.1839 7.0579 19 7 3.6756 -9.8690 8.0284 20 14 2.0174 -11.8572 7.0444 21 1 2.8642 -12.8240 6.3004 22 1 1.8351 -12.3306 8.4401 23 1 0.6927 -11.7474 6.3821 24 6 4.1895 2.5836 -0.0488 25 6 4.9980 2.5750 -1.3650 26 8 4.3504 1.5816 -2.1894 27 6 4.0263 0.4962 -1.2935 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 2.9226 -1.2330 0.8270 34 1 3.7321 -1.0134 3.5239 35 1 5.0887 -1.6796 2.5835 36 1 3.6174 -3.4923 1.7468 37 1 2.2613 -2.8255 2.6874 38 1 3.5456 -3.1640 4.7808 39 1 4.9022 -3.8310 3.8410 40 1 2.1791 -4.9586 3.8749 41 1 4.7002 -5.9411 5.0446 42 1 3.3436 -5.2749 5.9850 43 1 3.8096 -7.8114 6.7679 44 1 3.8556 -10.5053 8.7380 45 1 3.4261 3.3613 -0.0745 46 1 4.8516 2.7254 0.8054 47 1 4.9536 3.5531 -1.8440 48 1 6.0330 2.2924 -1.1727 49 1 4.9123 -0.1053 -1.0902 50 1 3.2356 -0.1227 -1.7175 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163380359.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:43 Heat of formation + Delta-G solvation = -167.749153 kcal Electronic energy + Delta-G solvation = -29676.681553 eV Core-core repulsion = 25317.874662 eV Total energy + Delta-G solvation = -4358.806892 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19396 -38.88105 -38.30473 -38.12882 -36.54204 -34.85755 -33.84757 -33.49821 -31.48522 -31.11562 -30.00072 -27.60959 -27.13217 -25.85439 -25.01227 -23.62127 -23.10676 -22.20471 -21.68332 -19.90815 -19.19796 -18.01536 -17.84560 -17.14692 -16.77937 -16.45967 -16.19335 -16.14309 -15.79437 -15.68574 -15.43831 -15.16129 -14.98134 -14.57610 -14.27679 -14.20371 -13.63497 -13.49845 -13.47167 -13.34551 -12.91214 -12.79824 -12.48966 -12.16649 -12.04498 -11.90229 -11.81249 -11.73482 -11.69157 -11.45831 -11.41131 -11.27528 -11.07560 -10.92482 -10.39456 -10.38561 -10.25605 -10.21726 -9.98685 -9.50860 -9.28207 -8.46811 -8.06764 -7.95811 -6.41555 -3.82439 2.24449 2.78622 3.07027 3.18098 3.26628 3.32380 3.50405 3.85496 3.91112 4.08598 4.22056 4.26580 4.35051 4.47405 4.60649 4.69192 4.79764 4.83946 4.88149 4.92252 4.97242 5.05293 5.08464 5.15934 5.19075 5.25056 5.26143 5.27014 5.30063 5.41900 5.44771 5.51526 5.52969 5.63817 5.79874 5.98030 6.01165 6.05821 6.22504 6.24970 6.27349 6.48662 7.20121 7.28780 7.55309 7.65266 7.94364 8.06499 8.61458 9.17962 9.54545 10.05972 10.76184 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.001515 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.679084 B =18478.545411 C =19016.905875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.079 3.921 4 C -0.113 4.113 5 C 0.528 3.472 6 O -0.542 6.542 7 N -0.713 5.713 8 C 0.119 3.881 9 C -0.128 4.128 10 C 0.063 3.937 11 N -0.669 5.669 12 C 0.050 3.950 13 C 0.441 3.559 14 O -0.584 6.584 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C -0.141 4.141 25 C 0.044 3.956 26 O -0.370 6.370 27 C 0.063 3.937 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.411 0.589 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.349 0.651 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 27.241 -15.529 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.314 6.314 3 C 0.002 3.998 4 C -0.116 4.116 5 C 0.313 3.687 6 O -0.419 6.419 7 N -0.366 5.366 8 C -0.005 4.005 9 C -0.166 4.166 10 C -0.067 4.067 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.468 6.468 15 N -0.200 5.200 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.179 4.179 25 C -0.033 4.033 26 O -0.288 6.288 27 C -0.014 4.014 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.115 0.885 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.424 26.819 -16.046 31.256 hybrid contribution -0.936 -0.262 1.328 1.645 sum -1.360 26.557 -14.718 30.393 Atomic orbital electron populations 1.22788 0.79658 1.03511 1.00258 1.87656 1.20828 1.27481 1.95465 1.22473 0.90255 0.85418 1.01624 1.22241 0.95891 0.97684 0.95819 1.19967 0.80790 0.81793 0.86155 1.90687 1.34919 1.68401 1.47909 1.46097 1.47535 1.15344 1.27624 1.21354 0.99447 0.91809 0.87910 1.21727 1.00855 0.93826 1.00195 1.21831 1.00015 0.89137 0.95762 1.60045 1.13682 1.14438 1.42002 1.21673 1.00850 0.94173 0.91521 1.19811 0.86567 0.86388 0.84630 1.90516 1.39943 1.78905 1.37444 1.41865 1.41473 1.13950 1.22750 1.19711 1.23789 0.90177 1.09283 0.87911 1.25268 0.97152 1.00132 0.95407 1.69613 1.35416 1.36901 1.12368 0.85848 0.79604 0.81470 0.77297 1.20382 1.20949 1.19442 1.23005 1.00609 0.93746 1.00541 1.23483 0.96406 0.93332 0.90031 1.89154 1.78581 1.29215 1.31862 1.23414 1.00677 0.90142 0.87204 0.93816 0.93681 0.88909 0.92331 0.91337 0.75061 0.91549 0.91238 0.90105 0.91227 0.95304 0.90799 0.83203 0.89546 0.93842 0.77442 0.91873 0.89874 0.87465 0.88533 0.91718 0.91527 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.40 -2.60 7.52 -35.23 -0.26 -2.87 16 3 C 0.08 0.49 4.63 37.15 0.17 0.67 16 4 C -0.11 -0.86 0.76 -154.09 -0.12 -0.98 16 5 C 0.53 5.40 6.41 -10.98 -0.07 5.33 16 6 O -0.54 -7.31 15.28 5.55 0.08 -7.22 16 7 N -0.71 -6.52 5.23 -60.29 -0.32 -6.84 16 8 C 0.12 1.15 5.67 -4.04 -0.02 1.12 16 9 C -0.13 -1.25 5.59 -26.72 -0.15 -1.40 16 10 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 11 N -0.67 -10.66 6.12 -115.05 -0.70 -11.36 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 14 O -0.58 -15.90 15.78 5.55 0.09 -15.82 16 15 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 16 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 20 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.14 -0.96 6.32 -25.16 -0.16 -1.12 16 25 C 0.04 0.29 7.63 37.93 0.29 0.58 16 26 O -0.37 -3.20 11.65 -35.23 -0.41 -3.61 16 27 C 0.06 0.48 6.65 37.93 0.25 0.73 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 3.32 6.30 -40.82 -0.26 3.06 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.35 5.67 8.43 -39.29 -0.33 5.34 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.08 0.42 7.73 -51.93 -0.40 0.02 16 46 H 0.11 0.89 6.50 -51.93 -0.34 0.55 16 47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.53 7.86 -51.93 -0.41 0.12 16 50 H 0.11 0.75 7.42 -51.93 -0.39 0.36 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -33.84 410.05 -7.07 -40.91 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -8.30 Total: 12.77 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 0.93 Total: 10.10 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.35 Total: -56.50 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.50 Total: -29.52 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.84 -7.07 -40.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163380359.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.838 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds