Wall clock time and date at job start Wed Apr 1 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00261 * 2 1 4 4 C 1.52995 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.50707 * 110.45903 * 300.69999 * 4 3 2 6 6 O 1.21284 * 119.99637 * 237.39905 * 5 4 3 7 7 N 1.34771 * 119.99635 * 57.39483 * 5 4 3 8 8 C 1.46506 * 119.99534 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46719 * 179.97438 * 8 7 5 10 10 C 1.53008 * 109.46689 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.46622 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46990 * 180.02562 * 12 11 10 14 14 O 1.21287 * 119.99883 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99971 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00130 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99977 * 0.02562 * 16 15 13 18 18 C 1.38955 * 120.00248 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99876 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47362 * 90.00146 * 20 18 16 22 22 H 1.48502 * 109.47281 * 210.00539 * 20 18 16 23 23 H 1.48506 * 109.47254 * 330.00012 * 20 18 16 24 24 C 1.54510 * 110.51408 * 178.09417 * 4 3 2 25 25 C 1.54477 * 104.06715 * 241.21909 * 24 4 3 26 26 O 1.44426 * 104.80094 * 23.97325 * 25 24 4 27 27 C 1.44422 * 105.27893 * 319.49291 * 26 25 24 28 28 H 1.09001 * 109.47063 * 300.00053 * 1 2 3 29 29 H 1.08993 * 109.47157 * 59.99918 * 1 2 3 30 30 H 1.08998 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47212 * 59.99727 * 3 2 1 32 32 H 1.08998 * 109.46641 * 299.99856 * 3 2 1 33 33 H 0.97001 * 120.00679 * 0.02562 * 7 5 4 34 34 H 1.09006 * 109.47161 * 60.00417 * 8 7 5 35 35 H 1.08995 * 109.47163 * 299.99998 * 8 7 5 36 36 H 1.09006 * 109.46807 * 60.00391 * 9 8 7 37 37 H 1.08995 * 109.47458 * 300.00009 * 9 8 7 38 38 H 1.08990 * 109.46924 * 60.00331 * 10 9 8 39 39 H 1.09004 * 109.46978 * 300.00208 * 10 9 8 40 40 H 1.00896 * 111.00219 * 303.95583 * 11 10 9 41 41 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 42 42 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 43 43 H 0.97000 * 120.00083 * 0.02562 * 15 13 12 44 44 H 0.96998 * 120.00198 * 179.97438 * 19 18 16 45 45 H 1.09006 * 110.50573 * 359.86724 * 24 4 3 46 46 H 1.09001 * 110.51394 * 122.56408 * 24 4 3 47 47 H 1.09000 * 110.37231 * 142.80290 * 25 24 4 48 48 H 1.08998 * 110.37048 * 265.14434 * 25 24 4 49 49 H 1.09000 * 110.36879 * 281.68366 * 27 26 25 50 50 H 1.08997 * 110.37917 * 159.34139 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0041 0.4241 1.2131 6 8 4.7895 0.9354 1.9831 7 7 3.5505 -0.8240 1.4429 8 6 4.0057 -1.5630 2.6232 9 6 3.3442 -2.9425 2.6475 10 6 3.8191 -3.7140 3.8805 11 7 3.1845 -5.0387 3.9035 12 6 3.6185 -5.8100 5.0760 13 6 2.9488 -7.1600 5.0652 14 8 2.1856 -7.4511 4.1687 15 7 3.1989 -8.0441 6.0512 16 6 2.5893 -9.2721 6.0416 17 1 1.9090 -9.5310 5.2438 18 6 2.8475 -10.1839 7.0579 19 7 3.6756 -9.8690 8.0284 20 14 2.0174 -11.8572 7.0444 21 1 2.8642 -12.8240 6.3004 22 1 1.8351 -12.3306 8.4401 23 1 0.6927 -11.7474 6.3821 24 6 4.1895 2.5836 -0.0488 25 6 4.9980 2.5750 -1.3650 26 8 4.3504 1.5816 -2.1894 27 6 4.0263 0.4962 -1.2935 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 2.9226 -1.2330 0.8270 34 1 3.7321 -1.0134 3.5239 35 1 5.0887 -1.6796 2.5835 36 1 3.6174 -3.4923 1.7468 37 1 2.2613 -2.8255 2.6874 38 1 3.5456 -3.1640 4.7808 39 1 4.9022 -3.8310 3.8410 40 1 2.1791 -4.9586 3.8749 41 1 4.7002 -5.9411 5.0446 42 1 3.3436 -5.2749 5.9850 43 1 3.8096 -7.8114 6.7679 44 1 3.8556 -10.5053 8.7380 45 1 3.4261 3.3613 -0.0745 46 1 4.8516 2.7254 0.8054 47 1 4.9536 3.5531 -1.8440 48 1 6.0330 2.2924 -1.1727 49 1 4.9123 -0.1053 -1.0902 50 1 3.2356 -0.1227 -1.7175 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163380359.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:42 Heat of formation + Delta-G solvation = -195.494098 kcal Electronic energy + Delta-G solvation = -29677.884664 eV Core-core repulsion = 25317.874662 eV Total energy + Delta-G solvation = -4360.010003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86381 -40.16609 -39.58838 -38.60508 -37.64131 -36.11902 -35.63204 -34.13557 -33.28822 -32.32423 -30.60145 -28.58477 -28.01010 -26.56512 -26.32365 -24.89159 -23.71740 -23.00126 -22.56065 -21.10245 -20.56897 -19.89721 -18.63690 -17.91867 -17.63516 -17.31790 -17.18508 -16.92822 -16.77479 -16.50970 -16.29975 -16.16750 -16.13087 -15.87628 -15.60631 -15.33713 -15.02640 -14.81507 -14.31489 -14.08400 -13.97762 -13.56474 -13.38495 -13.29101 -13.20600 -13.05773 -12.87619 -12.80277 -12.54385 -12.43411 -12.41291 -12.28576 -12.21302 -12.11377 -11.86232 -11.80916 -11.50646 -10.99963 -10.85846 -10.61246 -10.35390 -10.10060 -10.01856 -9.33642 -8.46706 -5.95685 1.38524 1.42317 1.46830 1.55093 2.04704 2.05609 2.29783 2.58446 2.89031 2.98320 3.20605 3.29472 3.52015 3.65378 3.74773 3.86543 4.00037 4.10272 4.14068 4.17746 4.20625 4.33787 4.34247 4.47374 4.49019 4.55348 4.56228 4.58501 4.60998 4.62573 4.69485 4.71176 4.77050 4.79608 4.93643 4.93841 4.96919 5.15720 5.20435 5.40940 5.45444 5.67331 5.88310 6.06846 6.09660 6.40726 6.53292 6.59822 7.12291 7.17946 7.55940 8.11014 8.70649 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.001515 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.679084 B =18478.545411 C =19016.905875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.082 3.918 4 C -0.110 4.110 5 C 0.525 3.475 6 O -0.578 6.578 7 N -0.706 5.706 8 C 0.124 3.876 9 C -0.114 4.114 10 C 0.064 3.936 11 N -0.683 5.683 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.623 6.623 15 N -0.573 5.573 16 C -0.336 4.336 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.994 3.006 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.139 4.139 25 C 0.042 3.958 26 O -0.384 6.384 27 C 0.065 3.935 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.417 0.583 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.345 0.655 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.118 0.882 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.469 28.012 -15.838 32.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.328 6.328 3 C 0.006 3.994 4 C -0.113 4.113 5 C 0.311 3.689 6 O -0.459 6.459 7 N -0.359 5.359 8 C 0.000 4.000 9 C -0.152 4.152 10 C -0.065 4.065 11 N -0.316 5.316 12 C -0.068 4.068 13 C 0.225 3.775 14 O -0.510 6.510 15 N -0.210 5.210 16 C -0.465 4.465 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.818 3.182 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.177 4.177 25 C -0.034 4.034 26 O -0.302 6.302 27 C -0.012 4.012 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.257 0.743 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.164 0.836 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.109 0.891 47 H 0.136 0.864 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.839 27.603 -16.355 32.095 hybrid contribution -0.791 -0.459 1.401 1.673 sum -1.630 27.144 -14.954 31.034 Atomic orbital electron populations 1.22902 0.78707 1.04018 1.00943 1.87625 1.21866 1.27677 1.95585 1.22468 0.89038 0.85531 1.02394 1.22248 0.97027 0.97679 0.94355 1.20426 0.80106 0.81860 0.86495 1.90669 1.36587 1.69223 1.49408 1.46080 1.47252 1.15112 1.27446 1.21237 0.99079 0.91636 0.88032 1.21569 1.01122 0.93410 0.99122 1.21899 1.00025 0.87430 0.97171 1.60044 1.13707 1.16570 1.41264 1.21538 1.00977 0.90924 0.93390 1.20883 0.85558 0.87983 0.83124 1.90483 1.41603 1.80169 1.38706 1.41939 1.41767 1.13824 1.23514 1.19689 1.25033 0.92067 1.09728 0.90247 1.26056 0.97390 1.03240 0.94604 1.69673 1.35739 1.38106 1.12590 0.84910 0.78390 0.77085 0.77836 1.19686 1.19533 1.19703 1.22997 1.00850 0.93892 0.99931 1.23612 0.95993 0.93909 0.89910 1.89139 1.78798 1.29727 1.32578 1.23406 1.00597 0.90058 0.87161 0.93567 0.92564 0.88555 0.92126 0.89907 0.74304 0.91892 0.91791 0.90483 0.90615 0.94010 0.90277 0.83605 0.87845 0.91505 0.76963 0.91293 0.87872 0.89137 0.86376 0.92148 0.92340 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -4.74 7.52 -148.98 -1.12 -5.86 16 3 C 0.08 0.89 4.63 71.98 0.33 1.23 16 4 C -0.11 -1.57 0.76 -51.91 -0.04 -1.61 16 5 C 0.53 10.52 6.41 87.66 0.56 11.08 16 6 O -0.58 -15.70 15.28 -3.04 -0.05 -15.75 16 7 N -0.71 -12.37 5.23 -463.04 -2.42 -14.79 16 8 C 0.12 2.28 5.67 86.38 0.49 2.77 16 9 C -0.11 -2.07 5.59 30.60 0.17 -1.90 16 10 C 0.06 1.40 5.69 86.31 0.49 1.89 16 11 N -0.68 -20.88 6.12 -517.91 -3.17 -24.06 16 12 C 0.06 2.18 6.17 85.56 0.53 2.71 16 13 C 0.44 20.82 7.82 87.66 0.69 21.50 16 14 O -0.62 -34.51 15.78 -3.05 -0.05 -34.56 16 15 N -0.57 -29.52 5.29 -307.00 -1.62 -31.15 16 16 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 19 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 20 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C -0.14 -1.75 6.32 31.61 0.20 -1.55 16 25 C 0.04 0.51 7.63 72.48 0.55 1.06 16 26 O -0.38 -6.19 11.65 -148.98 -1.74 -7.93 16 27 C 0.07 0.94 6.65 72.49 0.48 1.42 16 28 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.42 6.30 6.30 -92.71 -0.58 5.71 16 34 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.35 10.93 8.43 -89.70 -0.76 10.17 16 41 H 0.10 3.19 8.14 -2.39 -0.02 3.18 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.40 19.37 7.90 -92.71 -0.73 18.63 16 44 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.10 0.86 7.73 -2.38 -0.02 0.84 16 46 H 0.09 1.50 6.50 -2.39 -0.02 1.48 16 47 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 0.92 7.86 -2.39 -0.02 0.90 16 50 H 0.12 1.46 7.42 -2.39 -0.02 1.44 16 Total: -1.00 -72.96 410.05 -1.98 -74.93 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -1.11 Total: 42.15 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.98 Total: 21.52 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -6.93 Total: -119.42 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: -2.95 Total: -64.10 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.96 -1.98 -74.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163380359.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.561 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds