Wall clock time and date at job start Wed Apr 1 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99657 * 2 1 4 4 C 1.53001 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47150 * 54.99495 * 4 3 2 6 6 O 1.42903 * 109.46862 * 295.00115 * 4 3 2 7 7 C 1.42897 * 114.00096 * 150.00176 * 6 4 3 8 8 C 1.50695 * 109.47580 * 175.00135 * 4 3 2 9 9 O 1.21274 * 120.00413 * 115.26876 * 8 4 3 10 10 N 1.34784 * 119.99635 * 294.99834 * 8 4 3 11 11 C 1.47426 * 125.64857 * 0.02588 * 10 8 4 12 12 C 1.54912 * 104.82994 * 204.09393 * 11 10 8 13 13 C 1.55160 * 101.57860 * 322.98724 * 12 11 10 14 14 H 1.09000 * 110.72397 * 277.13785 * 13 12 11 15 15 N 1.46900 * 110.71757 * 154.04660 * 13 12 11 16 16 C 1.46895 * 111.00193 * 86.45533 * 15 13 12 17 17 C 1.50706 * 109.47237 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00147 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99932 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00057 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99755 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00082 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00013 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99870 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46757 * 60.00207 * 24 22 20 26 26 H 1.48502 * 109.46959 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46867 * 300.00135 * 24 22 20 28 28 C 1.47022 * 125.64460 * 179.71653 * 10 8 4 29 29 H 1.09007 * 109.88188 * 298.39260 * 28 10 8 30 30 C 1.52999 * 109.88393 * 59.55873 * 28 10 8 31 31 H 1.08997 * 109.47105 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47711 * 300.00390 * 1 2 3 33 33 H 1.09006 * 109.47023 * 60.00457 * 1 2 3 34 34 H 1.09002 * 109.47289 * 59.99678 * 3 2 1 35 35 H 1.09000 * 109.47199 * 299.99642 * 3 2 1 36 36 H 1.09000 * 109.46777 * 179.97438 * 7 6 4 37 37 H 1.09004 * 109.46456 * 299.99460 * 7 6 4 38 38 H 1.08997 * 109.47421 * 59.99415 * 7 6 4 39 39 H 1.08998 * 110.36404 * 322.92704 * 11 10 8 40 40 H 1.08991 * 110.36580 * 85.14144 * 11 10 8 41 41 H 1.08995 * 111.00742 * 81.05954 * 12 11 10 42 42 H 1.09002 * 111.00226 * 204.88005 * 12 11 10 43 43 H 1.00904 * 111.00237 * 322.49497 * 15 13 12 44 44 H 1.09004 * 109.46969 * 299.99574 * 16 15 13 45 45 H 1.09002 * 109.47216 * 59.99857 * 16 15 13 46 46 H 0.97002 * 120.00105 * 359.97438 * 19 17 16 47 47 H 0.97005 * 119.99898 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.47118 * 58.54676 * 30 28 10 49 49 H 1.09001 * 109.46869 * 178.54311 * 30 28 10 50 50 H 1.08999 * 109.46976 * 298.54190 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8507 0.5686 -0.8426 6 8 3.9658 0.5794 1.2202 7 6 5.1691 -0.1818 1.0988 8 6 4.1479 2.5561 -0.1244 9 8 4.8108 3.0085 0.7847 10 7 3.9633 3.2776 -1.2478 11 6 3.1884 2.8492 -2.4266 12 6 3.7692 3.6722 -3.6035 13 6 4.0554 5.0350 -2.9191 14 1 3.1519 5.6434 -2.8782 15 7 5.1308 5.7516 -3.6177 16 6 4.5970 6.5453 -4.7325 17 6 5.7268 7.2649 -5.4232 18 8 6.8647 7.1302 -5.0255 19 7 5.4727 8.0581 -6.4827 20 6 6.5005 8.7123 -7.1114 21 1 7.5139 8.5917 -6.7577 22 6 6.2387 9.5296 -8.2041 23 7 5.0058 9.6760 -8.6347 24 14 7.6391 10.4216 -9.0601 25 1 8.6137 9.4291 -9.5799 26 1 7.0995 11.2235 -10.1876 27 1 8.3172 11.3218 -8.0931 28 6 4.4962 4.6248 -1.4981 29 1 4.0930 5.3248 -0.7662 30 6 6.0239 4.6037 -1.4157 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 5.4287 -0.6078 2.0680 37 1 5.0198 -0.9846 0.3768 38 1 5.9766 0.4668 0.7593 39 1 3.3270 1.7828 -2.6045 40 1 2.1312 3.0757 -2.2883 41 1 4.6886 3.2226 -3.9784 42 1 3.0361 3.7820 -4.4027 43 1 5.8431 5.1123 -3.9373 44 1 4.0984 5.8852 -5.4424 45 1 3.8823 7.2741 -4.3502 46 1 4.5627 8.1655 -6.8011 47 1 4.8229 10.2469 -9.3973 48 1 6.4174 3.8969 -2.1462 49 1 6.4129 5.5996 -1.6276 50 1 6.3295 4.2997 -0.4146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179502801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:35 Heat of formation + Delta-G solvation = -143.220367 kcal Electronic energy + Delta-G solvation = -30802.704724 eV Core-core repulsion = 26444.961480 eV Total energy + Delta-G solvation = -4357.743244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87358 -39.11336 -38.25609 -37.88347 -37.04360 -34.87245 -33.85931 -32.10789 -31.25960 -31.13286 -30.03409 -27.20597 -26.78536 -26.40868 -25.24175 -24.49384 -23.75088 -22.73934 -20.69122 -19.39990 -19.23556 -18.02912 -17.85896 -17.28244 -16.99678 -16.24129 -16.19022 -15.95860 -15.71294 -15.55868 -15.30828 -14.73992 -14.55703 -14.48656 -14.13291 -13.84319 -13.75098 -13.58801 -13.35555 -12.93172 -12.88166 -12.84271 -12.41207 -12.30427 -12.21611 -12.16168 -11.75617 -11.58975 -11.56214 -11.51308 -11.40884 -11.04970 -10.93796 -10.89871 -10.71426 -10.46680 -10.24499 -10.15642 -9.54030 -9.53333 -8.91289 -8.52503 -8.12913 -7.99743 -6.45049 -3.85949 2.20519 2.49672 3.17968 3.23965 3.28270 3.29469 3.37409 3.86187 3.95557 4.13401 4.18018 4.34123 4.41583 4.47319 4.60051 4.73340 4.82602 4.91217 4.92792 4.96496 5.02638 5.07595 5.09021 5.14148 5.16207 5.22036 5.24692 5.25860 5.43512 5.44677 5.52672 5.55961 5.71641 5.76454 5.79592 5.91888 6.07934 6.21577 6.32876 6.52734 6.59686 6.67288 7.09740 7.22731 7.51959 7.52826 7.89199 8.02449 8.57303 9.14435 9.50288 10.01518 10.72479 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.001913 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.143248 B =14630.656577 C =15405.578891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.067 3.933 4 C 0.081 3.919 5 H 0.094 0.906 6 O -0.351 6.351 7 C 0.030 3.970 8 C 0.509 3.491 9 O -0.513 6.513 10 N -0.614 5.614 11 C 0.096 3.904 12 C -0.167 4.167 13 C 0.083 3.917 14 H 0.095 0.905 15 N -0.653 5.653 16 C 0.051 3.949 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.144 3.856 29 H 0.080 0.920 30 C -0.154 4.154 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.354 0.646 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.048 0.952 49 H 0.088 0.912 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.559 -19.376 13.021 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.010 4.010 4 C 0.019 3.981 5 H 0.111 0.889 6 O -0.268 6.268 7 C -0.066 4.066 8 C 0.296 3.704 9 O -0.387 6.387 10 N -0.351 5.351 11 C -0.027 4.027 12 C -0.207 4.207 13 C -0.029 4.029 14 H 0.113 0.887 15 N -0.285 5.285 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C 0.041 3.959 29 H 0.098 0.902 30 C -0.212 4.212 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.176 0.824 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.448 -18.759 14.319 25.809 hybrid contribution -0.283 0.012 -1.713 1.736 sum -10.731 -18.747 12.606 25.011 Atomic orbital electron populations 1.22787 0.80430 1.03092 1.00247 1.87901 1.20071 1.26672 1.95477 1.22553 0.90419 0.86003 1.02068 1.21923 0.94027 0.91907 0.90288 0.88879 1.88011 1.42251 1.66968 1.29525 1.22877 0.86452 0.94330 1.02957 1.20693 0.81648 0.86816 0.81250 1.90732 1.39135 1.70555 1.38280 1.48743 1.52377 1.18229 1.15765 1.22405 0.95616 0.99587 0.85113 1.23603 1.02504 0.97234 0.97374 1.22618 0.95059 0.92560 0.92660 0.88691 1.60035 1.11299 1.28547 1.28625 1.21704 0.97082 0.97174 0.92213 1.19780 0.89742 0.84590 0.83409 1.90533 1.22629 1.66915 1.66621 1.41851 1.10536 1.40818 1.26719 1.19652 0.90305 1.22945 1.10051 0.87959 1.25264 0.97502 0.97848 0.97303 1.69601 1.18734 1.39320 1.26648 0.85914 0.80430 0.79277 0.78586 1.19915 1.20976 1.19858 1.21551 0.95855 0.82270 0.96249 0.90205 1.21956 0.93592 1.03928 1.01682 0.89295 0.93783 0.93839 0.91649 0.90985 0.89063 0.93754 0.93614 0.90524 0.90866 0.90072 0.89409 0.82448 0.93703 0.89472 0.77469 0.91804 0.93253 0.89313 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.40 10.67 -40.08 -0.43 -3.82 16 3 C 0.07 0.56 5.50 37.16 0.20 0.76 16 4 C 0.08 0.80 2.15 -27.88 -0.06 0.74 16 5 H 0.09 0.77 7.26 -51.93 -0.38 0.39 16 6 O -0.35 -4.17 9.85 -59.70 -0.59 -4.76 16 7 C 0.03 0.27 10.81 101.05 1.09 1.37 16 8 C 0.51 6.14 6.98 -10.98 -0.08 6.07 16 9 O -0.51 -8.21 15.38 -14.30 -0.22 -8.43 16 10 N -0.61 -6.29 3.08 -163.01 -0.50 -6.79 16 11 C 0.10 0.68 5.36 -2.53 -0.01 0.67 16 12 C -0.17 -1.38 6.63 -24.58 -0.16 -1.54 16 13 C 0.08 0.88 3.09 -65.87 -0.20 0.68 16 14 H 0.09 0.93 7.89 -51.93 -0.41 0.52 16 15 N -0.65 -9.41 4.52 -106.04 -0.48 -9.89 16 16 C 0.05 0.81 6.02 -4.98 -0.03 0.78 16 17 C 0.44 9.91 7.82 -10.98 -0.09 9.82 16 18 O -0.58 -15.32 15.78 5.55 0.09 -15.23 16 19 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 24 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 C 0.14 1.68 3.49 -66.95 -0.23 1.45 16 29 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 30 C -0.15 -2.06 8.20 37.16 0.30 -1.76 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.45 5.46 -51.93 -0.28 0.17 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.44 7.33 -51.93 -0.38 0.06 16 40 H 0.07 0.40 7.09 -51.93 -0.37 0.03 16 41 H 0.08 0.73 7.82 -51.93 -0.41 0.32 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.35 5.40 7.26 -39.29 -0.29 5.12 16 44 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 45 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 46 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.05 0.64 7.85 -51.93 -0.41 0.24 16 49 H 0.09 1.33 7.45 -51.93 -0.39 0.94 16 50 H 0.06 0.89 6.73 -51.93 -0.35 0.55 16 LS Contribution 405.70 15.07 6.11 6.11 Total: -1.00 -34.04 405.70 -6.90 -40.94 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.13 Total: 10.84 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 1.61 Total: 12.47 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.32 Total: -53.88 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.15 Total: -32.24 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.04 -6.90 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179502801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.280 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds