Wall clock time and date at job start Wed Apr 1 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.46824 * 64.99778 * 4 3 2 6 6 C 1.42905 * 113.99688 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47058 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00046 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00039 * 180.02562 * 7 6 5 10 10 C 1.47026 * 125.64886 * 359.68334 * 9 7 6 11 11 C 1.54313 * 107.27531 * 180.97405 * 10 9 7 12 12 C 1.55149 * 102.86571 * 22.52744 * 11 10 9 13 13 H 1.09004 * 111.00134 * 82.37533 * 12 11 10 14 14 N 1.46899 * 111.04032 * 206.21185 * 12 11 10 15 15 C 1.46894 * 111.00060 * 297.62557 * 14 12 11 16 16 C 1.46895 * 111.00057 * 173.66737 * 14 12 11 17 17 C 1.50701 * 109.47082 * 190.00172 * 16 14 12 18 18 O 1.21293 * 120.00243 * 0.02562 * 17 16 14 19 19 N 1.34778 * 120.00223 * 180.02562 * 17 16 14 20 20 C 1.37094 * 120.00239 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00037 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99923 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99837 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47169 * 89.99688 * 24 22 20 26 26 H 1.48504 * 109.46953 * 209.99845 * 24 22 20 27 27 H 1.48500 * 109.47427 * 329.99682 * 24 22 20 28 28 C 1.47424 * 125.65143 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 33 33 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 34 34 H 1.09000 * 109.47262 * 184.99920 * 4 3 2 35 35 H 1.09002 * 109.46484 * 304.99927 * 4 3 2 36 36 H 1.08998 * 109.47348 * 300.00790 * 6 5 4 37 37 H 1.09001 * 109.46471 * 60.00592 * 6 5 4 38 38 H 1.08995 * 109.88536 * 300.52199 * 10 9 7 39 39 H 1.09007 * 109.87663 * 61.68537 * 10 9 7 40 40 H 1.09002 * 110.92113 * 264.11178 * 11 10 9 41 41 H 1.09001 * 110.73798 * 140.86375 * 11 10 9 42 42 H 1.09003 * 109.47440 * 59.99693 * 15 14 12 43 43 H 1.09005 * 109.47130 * 179.97438 * 15 14 12 44 44 H 1.08997 * 109.47532 * 299.99742 * 15 14 12 45 45 H 1.08992 * 109.47604 * 310.00104 * 16 14 12 46 46 H 1.09008 * 109.46922 * 70.00489 * 16 14 12 47 47 H 0.97005 * 120.00070 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99553 * 180.02562 * 23 22 20 49 49 H 1.09002 * 110.36671 * 274.67090 * 28 9 7 50 50 H 1.09003 * 110.36468 * 36.98853 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3812 0.4203 -1.3251 7 6 5.7195 -0.2230 -2.6452 8 8 4.8349 -0.5158 -3.4215 9 7 7.0051 -0.4731 -2.9631 10 6 8.1712 -0.1651 -2.1223 11 6 9.4278 -0.6043 -2.9029 12 6 8.9369 -0.6066 -4.3747 13 1 8.9693 0.3970 -4.7989 14 7 9.7192 -1.5454 -5.1901 15 6 11.1334 -1.1508 -5.2360 16 6 9.1601 -1.6592 -6.5437 17 6 9.8272 -2.7998 -7.2684 18 8 10.6837 -3.4539 -6.7118 19 7 9.4720 -3.0932 -8.5350 20 6 10.0785 -4.1312 -9.1941 21 1 10.8411 -4.7135 -8.6984 22 6 9.7127 -4.4333 -10.5001 23 7 8.7851 -3.7244 -11.1033 24 14 10.5396 -5.8471 -11.3983 25 1 9.7777 -7.0990 -11.1586 26 1 10.5707 -5.5577 -12.8545 27 1 11.9276 -6.0085 -10.8959 28 6 7.4756 -1.0942 -4.2146 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.9785 2.1766 0.0889 35 1 3.8514 0.5683 0.8410 36 1 5.8622 1.3965 -1.2631 37 1 5.7358 -0.2118 -0.5110 38 1 8.2120 0.9056 -1.9227 39 1 8.1081 -0.7171 -1.1844 40 1 9.7448 -1.6024 -2.6005 41 1 10.2369 0.1134 -2.7673 42 1 11.5412 -1.1421 -4.2252 43 1 11.6896 -1.8629 -5.8457 44 1 11.2189 -0.1550 -5.6709 45 1 8.0884 -1.8468 -6.4797 46 1 9.3347 -0.7311 -7.0882 47 1 8.7873 -2.5700 -8.9803 48 1 8.5295 -3.9355 -12.0149 49 1 7.4451 -2.1808 -4.1336 50 1 6.8692 -0.7586 -5.0559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189399748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:06 Heat of formation + Delta-G solvation = -136.934457 kcal Electronic energy + Delta-G solvation = -29833.417411 eV Core-core repulsion = 25475.946744 eV Total energy + Delta-G solvation = -4357.470666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35608 -39.01379 -38.49102 -37.75697 -37.07312 -35.45983 -33.80893 -31.46176 -31.22084 -30.81616 -29.44644 -27.85287 -27.49873 -26.51389 -24.89846 -23.80794 -22.96182 -22.91035 -20.31032 -19.66602 -19.03933 -17.82430 -17.68125 -17.30694 -17.11182 -16.80013 -16.07900 -15.92770 -15.74004 -15.48815 -15.09602 -14.80382 -14.60517 -14.54971 -14.19753 -13.84909 -13.68494 -13.41579 -13.34806 -13.11915 -12.87532 -12.67582 -12.56042 -12.32270 -12.11515 -11.86230 -11.78252 -11.51378 -11.47117 -11.38409 -11.26142 -11.06967 -10.95640 -10.76727 -10.37371 -10.19401 -10.11452 -10.04399 -9.89232 -9.45372 -8.81216 -8.46891 -7.97833 -7.88472 -6.39061 -3.79938 2.40372 2.46421 3.20023 3.28564 3.33870 3.38000 3.48031 3.90882 3.95064 4.16201 4.24370 4.44227 4.52832 4.63025 4.70391 4.73846 4.77218 4.86986 4.92633 4.95643 5.02745 5.06141 5.07957 5.13494 5.18363 5.28211 5.28814 5.31011 5.36540 5.59337 5.63955 5.70284 5.77603 5.87665 5.90241 5.92602 6.04918 6.08971 6.29805 6.51794 6.64019 6.80678 7.18643 7.29045 7.35884 7.57668 8.02591 8.08565 8.64020 9.20418 9.56876 10.08354 10.78625 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.001834 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.234020 B =15263.092222 C =16801.726922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.051 3.949 7 C 0.528 3.472 8 O -0.514 6.514 9 N -0.619 5.619 10 C 0.100 3.900 11 C -0.122 4.122 12 C 0.068 3.932 13 H 0.055 0.945 14 N -0.507 5.507 15 C 0.024 3.976 16 C 0.041 3.959 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.114 3.886 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.015 0.985 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.302 15.459 24.079 29.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.273 6.273 6 C -0.029 4.029 7 C 0.315 3.685 8 O -0.388 6.388 9 N -0.356 5.356 10 C -0.023 4.023 11 C -0.160 4.160 12 C -0.041 4.041 13 H 0.073 0.927 14 N -0.231 5.231 15 C -0.124 4.124 16 C -0.090 4.090 17 C 0.230 3.770 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.008 4.008 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.033 0.967 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.433 14.167 23.927 29.057 hybrid contribution -0.033 0.855 -0.931 1.264 sum -8.466 15.022 22.996 28.743 Atomic orbital electron populations 1.22757 0.80925 1.03026 0.99823 1.87984 1.19725 1.27053 1.95356 1.22539 0.92063 0.85785 1.00996 1.22604 0.93848 0.97545 0.87500 1.88096 1.19383 1.82067 1.37756 1.22139 0.84154 1.00648 0.95973 1.19829 0.81066 0.79365 0.88198 1.90773 1.45785 1.51126 1.51113 1.48336 1.05072 1.61925 1.20273 1.22108 0.85242 1.00374 0.94602 1.22685 0.96023 1.03586 0.93726 1.22784 0.92784 0.94494 0.94071 0.92693 1.61605 1.02615 1.46812 1.12062 1.22536 0.88561 0.99017 1.02298 1.21933 1.00007 0.98051 0.88983 1.19668 0.86876 0.87539 0.82926 1.90480 1.35067 1.53717 1.66989 1.41869 1.36503 1.30384 1.11227 1.19693 1.19236 1.08502 0.95437 0.87885 1.25268 0.96858 0.98941 0.96895 1.69614 1.30420 1.40174 1.13991 0.85856 0.79602 0.80660 0.78145 1.20398 1.20976 1.19447 1.22281 0.93436 0.98965 0.86131 0.93882 0.94252 0.89468 0.92174 0.91661 0.91518 0.92121 0.90395 0.90191 0.91336 0.91004 0.88886 0.89992 0.91968 0.88334 0.96696 0.89246 0.93307 0.77466 0.91867 0.89698 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.03 10.67 -40.08 -0.43 -4.46 16 3 C 0.06 0.48 6.32 37.16 0.23 0.71 16 4 C 0.06 0.46 6.32 37.16 0.23 0.70 16 5 O -0.35 -4.21 9.84 -59.73 -0.59 -4.80 16 6 C 0.05 0.47 5.61 36.00 0.20 0.67 16 7 C 0.53 7.08 7.93 -10.99 -0.09 7.00 16 8 O -0.51 -9.50 16.75 -14.36 -0.24 -9.74 16 9 N -0.62 -7.19 3.33 -170.54 -0.57 -7.75 16 10 C 0.10 0.77 6.48 -3.07 -0.02 0.75 16 11 C -0.12 -1.11 5.40 -24.91 -0.13 -1.24 16 12 C 0.07 0.84 2.70 -65.58 -0.18 0.66 16 13 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 14 N -0.51 -8.03 4.40 -233.77 -1.03 -9.06 16 15 C 0.02 0.36 9.01 60.06 0.54 0.90 16 16 C 0.04 0.74 5.32 -4.98 -0.03 0.71 16 17 C 0.44 10.44 7.47 -10.98 -0.08 10.36 16 18 O -0.58 -15.32 13.91 5.55 0.08 -15.25 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.11 1.53 5.32 -2.54 -0.01 1.52 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.06 0.78 7.20 -51.93 -0.37 0.41 16 43 H 0.10 1.86 5.83 -51.93 -0.30 1.56 16 44 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 1.50 6.68 -51.93 -0.35 1.16 16 46 H 0.05 0.80 8.12 -51.92 -0.42 0.38 16 47 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.08 1.15 7.68 -51.93 -0.40 0.76 16 LS Contribution 411.26 15.07 6.20 6.20 Total: -1.00 -36.59 411.26 -7.83 -44.42 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.44 Total: 6.67 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 1.54 Total: 16.06 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.93 Total: -55.31 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.18 Total: -34.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.59 -7.83 -44.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189399748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.513 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds