Wall clock time and date at job start Wed Apr 1 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.46824 * 64.99778 * 4 3 2 6 6 C 1.42905 * 113.99688 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47058 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00046 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00039 * 180.02562 * 7 6 5 10 10 C 1.47026 * 125.64886 * 359.68334 * 9 7 6 11 11 C 1.54313 * 107.27531 * 180.97405 * 10 9 7 12 12 C 1.55149 * 102.86571 * 22.52744 * 11 10 9 13 13 H 1.09004 * 111.00134 * 82.37533 * 12 11 10 14 14 N 1.46899 * 111.04032 * 206.21185 * 12 11 10 15 15 C 1.46894 * 111.00060 * 297.62557 * 14 12 11 16 16 C 1.46895 * 111.00057 * 173.66737 * 14 12 11 17 17 C 1.50701 * 109.47082 * 190.00172 * 16 14 12 18 18 O 1.21293 * 120.00243 * 0.02562 * 17 16 14 19 19 N 1.34778 * 120.00223 * 180.02562 * 17 16 14 20 20 C 1.37094 * 120.00239 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00037 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99923 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99837 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47169 * 89.99688 * 24 22 20 26 26 H 1.48504 * 109.46953 * 209.99845 * 24 22 20 27 27 H 1.48500 * 109.47427 * 329.99682 * 24 22 20 28 28 C 1.47424 * 125.65143 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 33 33 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 34 34 H 1.09000 * 109.47262 * 184.99920 * 4 3 2 35 35 H 1.09002 * 109.46484 * 304.99927 * 4 3 2 36 36 H 1.08998 * 109.47348 * 300.00790 * 6 5 4 37 37 H 1.09001 * 109.46471 * 60.00592 * 6 5 4 38 38 H 1.08995 * 109.88536 * 300.52199 * 10 9 7 39 39 H 1.09007 * 109.87663 * 61.68537 * 10 9 7 40 40 H 1.09002 * 110.92113 * 264.11178 * 11 10 9 41 41 H 1.09001 * 110.73798 * 140.86375 * 11 10 9 42 42 H 1.09003 * 109.47440 * 59.99693 * 15 14 12 43 43 H 1.09005 * 109.47130 * 179.97438 * 15 14 12 44 44 H 1.08997 * 109.47532 * 299.99742 * 15 14 12 45 45 H 1.08992 * 109.47604 * 310.00104 * 16 14 12 46 46 H 1.09008 * 109.46922 * 70.00489 * 16 14 12 47 47 H 0.97005 * 120.00070 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99553 * 180.02562 * 23 22 20 49 49 H 1.09002 * 110.36671 * 274.67090 * 28 9 7 50 50 H 1.09003 * 110.36468 * 36.98853 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3812 0.4203 -1.3251 7 6 5.7195 -0.2230 -2.6452 8 8 4.8349 -0.5158 -3.4215 9 7 7.0051 -0.4731 -2.9631 10 6 8.1712 -0.1651 -2.1223 11 6 9.4278 -0.6043 -2.9029 12 6 8.9369 -0.6066 -4.3747 13 1 8.9693 0.3970 -4.7989 14 7 9.7192 -1.5454 -5.1901 15 6 11.1334 -1.1508 -5.2360 16 6 9.1601 -1.6592 -6.5437 17 6 9.8272 -2.7998 -7.2684 18 8 10.6837 -3.4539 -6.7118 19 7 9.4720 -3.0932 -8.5350 20 6 10.0785 -4.1312 -9.1941 21 1 10.8411 -4.7135 -8.6984 22 6 9.7127 -4.4333 -10.5001 23 7 8.7851 -3.7244 -11.1033 24 14 10.5396 -5.8471 -11.3983 25 1 9.7777 -7.0990 -11.1586 26 1 10.5707 -5.5577 -12.8545 27 1 11.9276 -6.0085 -10.8959 28 6 7.4756 -1.0942 -4.2146 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.9785 2.1766 0.0889 35 1 3.8514 0.5683 0.8410 36 1 5.8622 1.3965 -1.2631 37 1 5.7358 -0.2118 -0.5110 38 1 8.2120 0.9056 -1.9227 39 1 8.1081 -0.7171 -1.1844 40 1 9.7448 -1.6024 -2.6005 41 1 10.2369 0.1134 -2.7673 42 1 11.5412 -1.1421 -4.2252 43 1 11.6896 -1.8629 -5.8457 44 1 11.2189 -0.1550 -5.6709 45 1 8.0884 -1.8468 -6.4797 46 1 9.3347 -0.7311 -7.0882 47 1 8.7873 -2.5700 -8.9803 48 1 8.5295 -3.9355 -12.0149 49 1 7.4451 -2.1808 -4.1336 50 1 6.8692 -0.7586 -5.0559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189399748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:05 Heat of formation + Delta-G solvation = -166.170702 kcal Electronic energy + Delta-G solvation = -29834.685189 eV Core-core repulsion = 25475.946744 eV Total energy + Delta-G solvation = -4358.738445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32760 -40.37325 -39.45212 -38.87039 -37.90016 -36.74379 -35.78403 -33.29021 -32.33720 -31.51410 -30.33996 -29.30793 -28.29769 -27.09598 -26.70557 -25.01931 -23.91205 -23.50140 -21.43536 -20.94907 -20.41213 -19.83474 -18.52662 -18.03499 -17.92548 -17.75449 -17.36481 -16.87981 -16.62817 -16.55710 -16.18431 -16.10462 -15.96238 -15.71803 -15.43115 -15.28302 -15.01856 -14.60818 -14.26387 -14.14391 -13.87834 -13.64272 -13.50301 -13.41176 -13.27982 -13.09254 -12.95037 -12.80584 -12.58856 -12.43188 -12.38162 -12.32405 -12.12313 -12.01683 -11.88801 -11.81041 -11.45574 -10.94420 -10.71305 -10.62220 -10.28758 -10.00632 -9.74652 -9.25815 -8.46437 -5.95373 1.37775 1.41087 1.50702 1.53989 1.57753 2.04561 2.27947 2.68474 2.87676 2.92119 3.20081 3.30088 3.42702 3.65908 3.73434 4.03815 4.08165 4.17510 4.20002 4.22089 4.26774 4.29061 4.35617 4.39071 4.44016 4.47299 4.48534 4.56697 4.58685 4.58835 4.62328 4.74522 4.78045 4.79410 4.85146 4.88584 5.01217 5.15209 5.19804 5.30111 5.41100 5.84272 6.03428 6.05867 6.19804 6.26521 6.45593 6.59891 7.07616 7.12583 7.55897 8.11147 8.71111 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.001834 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.234020 B =15263.092222 C =16801.726922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.054 3.946 4 C 0.057 3.943 5 O -0.400 6.400 6 C 0.057 3.943 7 C 0.518 3.482 8 O -0.582 6.582 9 N -0.615 5.615 10 C 0.098 3.902 11 C -0.115 4.115 12 C 0.073 3.927 13 H 0.070 0.930 14 N -0.525 5.525 15 C 0.029 3.971 16 C 0.055 3.945 17 C 0.443 3.557 18 O -0.610 6.610 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.081 0.919 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.995 3.005 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.112 3.888 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.032 0.968 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.394 0.606 48 H 0.277 0.723 49 H 0.059 0.941 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.530 17.525 26.522 32.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.022 4.022 4 C -0.019 4.019 5 O -0.319 6.319 6 C -0.022 4.022 7 C 0.307 3.693 8 O -0.461 6.461 9 N -0.351 5.351 10 C -0.023 4.023 11 C -0.153 4.153 12 C -0.036 4.036 13 H 0.087 0.913 14 N -0.249 5.249 15 C -0.118 4.118 16 C -0.077 4.077 17 C 0.231 3.769 18 O -0.496 6.496 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.564 5.564 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.011 4.011 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.228 0.772 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.634 16.268 26.415 31.948 hybrid contribution -0.274 0.237 -1.609 1.650 sum -7.908 16.505 24.806 30.827 Atomic orbital electron populations 1.22887 0.79752 1.03496 1.00857 1.87929 1.21323 1.29060 1.95602 1.22800 0.92493 0.84888 1.02015 1.22885 0.93672 0.99197 0.86161 1.88049 1.20862 1.82986 1.40018 1.22262 0.83647 1.02658 0.93617 1.20791 0.80690 0.78567 0.89216 1.90736 1.47803 1.54146 1.53446 1.48429 1.05905 1.60771 1.19946 1.22435 0.82538 1.03023 0.94341 1.22722 0.97569 1.04064 0.90920 1.22813 0.91310 0.93863 0.95628 0.91258 1.61539 1.03450 1.49064 1.10888 1.22428 0.87608 0.98456 1.03343 1.21747 0.99648 0.96154 0.90120 1.20660 0.85937 0.88078 0.82256 1.90456 1.36403 1.55176 1.67570 1.41964 1.36882 1.30387 1.12115 1.19682 1.20054 1.09897 0.96489 0.90056 1.26080 0.97210 1.01167 0.97055 1.69686 1.31017 1.41216 1.14432 0.84901 0.78428 0.77550 0.77291 1.19843 1.19577 1.19485 1.22107 0.94420 0.97698 0.86906 0.93966 0.92037 0.89420 0.93121 0.88525 0.88172 0.91174 0.86443 0.87482 0.87686 0.88600 0.90002 0.86985 0.89090 0.92638 0.94948 0.88592 0.91420 0.77231 0.91366 0.92225 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -8.72 10.67 -144.34 -1.54 -10.26 16 3 C 0.05 0.75 6.32 71.99 0.45 1.21 16 4 C 0.06 0.71 6.32 71.99 0.45 1.16 16 5 O -0.40 -8.98 9.84 -125.55 -1.24 -10.22 16 6 C 0.06 0.90 5.61 71.23 0.40 1.30 16 7 C 0.52 13.50 7.93 87.66 0.69 14.19 16 8 O -0.58 -22.48 16.75 15.99 0.27 -22.21 16 9 N -0.62 -13.27 3.33 -811.85 -2.70 -15.97 16 10 C 0.10 1.09 6.48 86.72 0.56 1.65 16 11 C -0.11 -1.65 5.40 31.78 0.17 -1.48 16 12 C 0.07 1.64 2.70 46.30 0.13 1.76 16 13 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 14 N -0.52 -16.24 4.40 -893.52 -3.93 -20.17 16 15 C 0.03 0.84 9.01 127.69 1.15 1.99 16 16 C 0.05 1.97 5.32 85.56 0.46 2.42 16 17 C 0.44 21.53 7.47 87.66 0.66 22.19 16 18 O -0.61 -33.58 13.91 -3.07 -0.04 -33.63 16 19 N -0.58 -30.49 5.29 -306.98 -1.62 -32.11 16 20 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 21 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.92 -51.29 13.05 21.66 0.28 -51.01 16 24 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.11 3.02 5.32 86.85 0.46 3.48 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 1.01 8.08 -2.39 -0.02 0.99 16 42 H 0.09 2.06 7.20 -2.39 -0.02 2.04 16 43 H 0.05 2.11 5.83 -2.38 -0.01 2.10 16 44 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.10 3.33 6.68 -2.39 -0.02 3.31 16 46 H 0.07 2.19 8.12 -2.38 -0.02 2.17 16 47 H 0.39 20.10 7.90 -92.70 -0.73 19.37 16 48 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 49 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.06 1.80 7.68 -2.39 -0.02 1.79 16 Total: -1.00 -85.89 411.26 -0.18 -86.06 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.20 Total: 30.90 kcal Atomic # 6 Polarization: 24.57 SS G_CDS: 8.12 Total: 32.69 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -7.97 Total: -119.26 kcal Atomic # 8 Polarization: -73.76 SS G_CDS: -2.55 Total: -76.31 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -85.89 -0.18 -86.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189399748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.106 kcal (2) G-P(sol) polarization free energy of solvation -85.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds