Wall clock time and date at job start Wed Apr 1 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42900 * 109.47272 * 2 1 4 4 C 1.42896 * 113.99919 * 175.38079 * 3 2 1 5 5 H 1.09007 * 109.47082 * 343.44311 * 4 3 2 6 6 C 1.52998 * 109.47640 * 103.44470 * 4 3 2 7 7 C 1.52997 * 109.47190 * 296.00097 * 6 4 3 8 8 C 1.50705 * 109.47015 * 223.45055 * 4 3 2 9 9 O 1.21281 * 119.99438 * 354.99337 * 8 4 3 10 10 N 1.34772 * 120.00483 * 175.00086 * 8 4 3 11 11 C 1.46491 * 120.00337 * 179.97438 * 10 8 4 12 12 H 1.08996 * 110.29204 * 34.29529 * 11 10 8 13 13 C 1.54392 * 110.32151 * 272.16640 * 11 10 8 14 14 N 1.48719 * 104.51648 * 217.31886 * 13 11 10 15 15 C 1.46901 * 111.01269 * 158.96832 * 14 13 11 16 16 C 1.50700 * 109.47013 * 60.60799 * 15 14 13 17 17 O 1.21289 * 119.99763 * 5.72176 * 16 15 14 18 18 N 1.34774 * 119.99698 * 185.71840 * 16 15 14 19 19 C 1.37096 * 119.99838 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99944 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00368 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99481 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00142 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47371 * 59.99970 * 23 21 19 25 25 H 1.48507 * 109.46946 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47116 * 299.99511 * 23 21 19 27 27 C 1.48564 * 104.28696 * 39.36610 * 14 13 11 28 28 C 1.54261 * 110.32418 * 156.42526 * 11 10 8 29 29 H 1.08994 * 110.32783 * 359.89599 * 28 11 10 30 30 O 1.42900 * 110.32267 * 237.78768 * 28 11 10 31 31 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46781 * 300.00120 * 1 2 3 33 33 H 1.09000 * 109.46773 * 59.99651 * 1 2 3 34 34 H 1.09003 * 109.46917 * 240.00023 * 2 1 3 35 35 H 1.09000 * 109.46773 * 120.00349 * 2 1 3 36 36 H 1.08996 * 109.47165 * 175.99904 * 6 4 3 37 37 H 1.09006 * 109.46508 * 55.99872 * 6 4 3 38 38 H 1.08999 * 109.46936 * 298.85045 * 7 6 4 39 39 H 1.09005 * 109.46949 * 178.84384 * 7 6 4 40 40 H 1.08999 * 109.46914 * 58.85201 * 7 6 4 41 41 H 0.97011 * 119.99544 * 359.97438 * 10 8 4 42 42 H 1.09000 * 110.40819 * 336.03214 * 13 11 10 43 43 H 1.09003 * 110.40509 * 98.47290 * 13 11 10 44 44 H 1.08996 * 109.46998 * 180.61262 * 15 14 13 45 45 H 1.08998 * 109.47029 * 300.60781 * 15 14 13 46 46 H 0.97003 * 120.00157 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00127 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.40962 * 201.78931 * 27 14 13 49 49 H 1.09008 * 110.51036 * 79.39917 * 27 14 13 50 50 H 0.96695 * 114.00162 * 180.02562 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4270 1.4614 0.1051 5 1 3.8424 0.5167 0.4560 6 6 4.0145 1.7987 -1.2667 7 6 3.7503 0.6423 -2.2330 8 6 3.7720 2.5557 1.0823 9 8 2.8924 3.2368 1.5652 10 7 5.0579 2.7774 1.4194 11 6 5.3933 3.8414 2.3688 12 1 4.6111 3.9364 3.1218 13 6 5.5884 5.1808 1.6261 14 7 6.7100 5.8444 2.3426 15 6 7.3459 6.8633 1.4968 16 6 6.3321 7.9166 1.1309 17 8 5.2217 7.8845 1.6177 18 7 6.6595 8.8942 0.2628 19 6 5.7374 9.8527 -0.0696 20 1 4.7486 9.8241 0.3638 21 6 6.0746 10.8603 -0.9650 22 7 7.2776 10.8947 -1.4928 23 14 4.8180 12.1659 -1.4185 24 1 4.4010 12.8976 -0.1955 25 1 5.4214 13.1196 -2.3838 26 1 3.6329 11.5188 -2.0365 27 6 7.6553 4.7395 2.6472 28 6 6.7513 3.5515 3.0406 29 1 7.1675 2.6166 2.6654 30 8 6.6000 3.4919 4.4603 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 5.0891 1.9557 -1.1730 37 1 3.5467 2.7060 -1.6491 38 1 4.2353 -0.2601 -1.8608 39 1 4.1509 0.8913 -3.2157 40 1 2.6765 0.4721 -2.3109 41 1 5.7614 2.2323 1.0332 42 1 5.8556 5.0025 0.5846 43 1 4.6837 5.7856 1.6893 44 1 8.1695 7.3251 2.0413 45 1 7.7275 6.3955 0.5893 46 1 7.5475 8.9196 -0.1267 47 1 7.5133 11.5983 -2.1176 48 1 8.3057 5.0138 3.4778 49 1 8.2483 4.4908 1.7670 50 1 7.4224 3.3125 4.9363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191448034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:22 Heat of formation + Delta-G solvation = -155.413136 kcal Electronic energy + Delta-G solvation = -31059.464272 eV Core-core repulsion = 26701.192310 eV Total energy + Delta-G solvation = -4358.271962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47735 -39.35447 -38.10239 -37.62971 -35.68458 -34.59835 -33.89721 -33.68076 -31.29849 -31.25985 -30.26070 -28.40916 -27.27460 -26.17246 -24.21413 -23.09562 -22.48473 -21.54265 -21.00733 -20.56890 -19.15610 -17.86833 -17.73788 -17.51188 -17.12835 -16.31148 -16.07724 -15.82246 -15.33829 -15.10463 -14.91700 -14.50503 -14.40725 -14.17861 -14.00626 -13.88755 -13.79541 -13.27066 -12.95536 -12.81804 -12.72543 -12.68513 -12.54577 -12.14143 -12.09460 -11.92637 -11.78234 -11.69226 -11.49200 -11.47804 -11.27963 -11.09253 -10.98656 -10.67524 -10.41159 -10.27567 -10.19322 -10.14037 -9.47422 -9.45096 -9.20232 -8.46693 -8.06010 -7.92075 -6.39534 -3.79964 2.50959 2.63768 3.23125 3.28094 3.33476 3.54764 3.91847 4.02567 4.05968 4.26134 4.35940 4.47254 4.53208 4.61916 4.66364 4.76679 4.86382 4.87038 4.90883 5.05444 5.07986 5.15259 5.26017 5.30463 5.36354 5.38109 5.44325 5.51655 5.58872 5.63676 5.67271 5.74690 5.77135 5.88723 5.89920 5.90054 6.04685 6.26654 6.31642 6.53149 6.81818 7.04489 7.15298 7.34662 7.51596 7.57997 8.08384 8.15447 8.63990 9.20707 9.55981 10.08247 10.78234 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.002775 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.417452 B =10085.871047 C =11941.676242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.078 3.922 5 H 0.086 0.914 6 C -0.138 4.138 7 C -0.153 4.153 8 C 0.508 3.492 9 O -0.504 6.504 10 N -0.723 5.723 11 C 0.146 3.854 12 H 0.113 0.887 13 C 0.033 3.967 14 N -0.477 5.477 15 C 0.035 3.965 16 C 0.441 3.559 17 O -0.573 6.573 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.904 5.904 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.002 4.002 28 C 0.100 3.900 29 H 0.065 0.935 30 O -0.550 6.550 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.396 0.604 42 H 0.043 0.957 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.089 0.911 49 H 0.050 0.950 50 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -26.057 1.298 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.016 3.984 5 H 0.104 0.896 6 C -0.176 4.176 7 C -0.210 4.210 8 C 0.292 3.708 9 O -0.376 6.376 10 N -0.378 5.378 11 C 0.040 3.960 12 H 0.131 0.869 13 C -0.096 4.096 14 N -0.201 5.201 15 C -0.097 4.097 16 C 0.226 3.774 17 O -0.457 6.457 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.131 4.131 28 C 0.039 3.961 29 H 0.083 0.917 30 O -0.355 6.355 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.230 0.770 42 H 0.061 0.939 43 H 0.134 0.866 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.107 0.893 49 H 0.068 0.932 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.574 -24.856 2.161 24.957 hybrid contribution 1.656 -0.204 -1.398 2.177 sum 1.082 -25.061 0.763 25.096 Atomic orbital electron populations 1.21738 0.93436 1.02126 1.03623 1.22728 0.96102 0.83632 1.00058 1.88081 1.18598 1.26243 1.94095 1.21954 0.84111 0.97445 0.94883 0.89633 1.21946 1.01007 1.00886 0.93765 1.21827 1.02382 0.97488 0.99343 1.20627 0.82593 0.85251 0.82328 1.90782 1.47019 1.47349 1.52492 1.45962 1.07856 1.36936 1.47096 1.21657 0.97065 0.86129 0.91106 0.86942 1.23638 0.98097 0.93167 0.94664 1.65230 1.06275 1.08522 1.40119 1.22105 0.97511 0.94227 0.95838 1.19681 0.89108 0.84713 0.83887 1.90531 1.22675 1.76408 1.56083 1.41841 1.15179 1.23947 1.39096 1.19666 0.96079 1.03556 1.23418 0.87930 1.25250 0.97101 0.98822 0.96744 1.69604 1.19130 1.34786 1.30995 0.85921 0.80045 0.79910 0.78395 1.19849 1.21002 1.19871 1.23916 0.95654 0.92234 1.01256 1.22652 0.94909 0.96158 0.82354 0.91708 1.86599 1.37027 1.94823 1.17036 0.91111 0.91547 0.91660 0.92855 0.93405 0.90469 0.89947 0.92788 0.91916 0.91882 0.76989 0.93899 0.86614 0.88942 0.93424 0.77548 0.91870 0.89281 0.93153 0.77440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.43 6.06 37.16 0.23 0.66 16 3 O -0.35 -4.35 9.20 -55.09 -0.51 -4.86 16 4 C 0.08 0.80 2.68 -27.88 -0.07 0.72 16 5 H 0.09 0.61 7.61 -51.93 -0.39 0.21 16 6 C -0.14 -1.20 5.61 -26.73 -0.15 -1.35 16 7 C -0.15 -1.04 9.17 37.16 0.34 -0.70 16 8 C 0.51 7.03 7.18 -10.99 -0.08 6.95 16 9 O -0.50 -9.77 16.18 -14.31 -0.23 -10.00 16 10 N -0.72 -8.15 4.99 -52.47 -0.26 -8.41 16 11 C 0.15 2.07 3.19 -66.55 -0.21 1.86 16 12 H 0.11 1.99 7.44 -51.93 -0.39 1.60 16 13 C 0.03 0.58 5.29 -2.09 -0.01 0.57 16 14 N -0.48 -8.15 5.19 -231.25 -1.20 -9.36 16 15 C 0.03 0.63 5.40 -4.98 -0.03 0.60 16 16 C 0.44 10.67 7.43 -10.99 -0.08 10.59 16 17 O -0.57 -16.06 13.96 5.55 0.08 -15.98 16 18 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 19 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 20 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 23 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.00 -0.02 6.24 -2.18 -0.01 -0.03 16 28 C 0.10 1.08 4.18 -25.35 -0.11 0.97 16 29 H 0.07 0.49 7.65 -51.93 -0.40 0.09 16 30 O -0.55 -6.27 13.26 -35.23 -0.47 -6.74 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.35 6.14 -51.93 -0.32 0.03 16 35 H 0.05 0.36 8.03 -51.93 -0.42 -0.06 16 36 H 0.08 0.53 7.80 -51.93 -0.40 0.13 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.46 6.22 -51.93 -0.32 0.14 16 41 H 0.40 2.88 8.05 -40.81 -0.33 2.55 16 42 H 0.04 0.72 7.88 -51.93 -0.41 0.32 16 43 H 0.12 2.61 6.51 -51.93 -0.34 2.28 16 44 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.05 0.76 7.98 -51.93 -0.41 0.35 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 49 H 0.05 0.50 7.92 -51.92 -0.41 0.09 16 50 H 0.38 2.38 9.12 45.56 0.42 2.80 16 LS Contribution 406.67 15.07 6.13 6.13 Total: -1.00 -37.68 406.67 -8.21 -45.89 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -7.34 Total: 13.57 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -0.05 Total: 11.93 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.80 Total: -56.45 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.13 Total: -37.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.68 -8.21 -45.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191448034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.524 kcal (2) G-P(sol) polarization free energy of solvation -37.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds