Wall clock time and date at job start Wed Apr 1 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42900 * 109.47272 * 2 1 4 4 C 1.42896 * 113.99919 * 175.38079 * 3 2 1 5 5 H 1.09007 * 109.47082 * 343.44311 * 4 3 2 6 6 C 1.52998 * 109.47640 * 103.44470 * 4 3 2 7 7 C 1.52997 * 109.47190 * 296.00097 * 6 4 3 8 8 C 1.50705 * 109.47015 * 223.45055 * 4 3 2 9 9 O 1.21281 * 119.99438 * 354.99337 * 8 4 3 10 10 N 1.34772 * 120.00483 * 175.00086 * 8 4 3 11 11 C 1.46491 * 120.00337 * 179.97438 * 10 8 4 12 12 H 1.08996 * 110.29204 * 34.29529 * 11 10 8 13 13 C 1.54392 * 110.32151 * 272.16640 * 11 10 8 14 14 N 1.48719 * 104.51648 * 217.31886 * 13 11 10 15 15 C 1.46901 * 111.01269 * 158.96832 * 14 13 11 16 16 C 1.50700 * 109.47013 * 60.60799 * 15 14 13 17 17 O 1.21289 * 119.99763 * 5.72176 * 16 15 14 18 18 N 1.34774 * 119.99698 * 185.71840 * 16 15 14 19 19 C 1.37096 * 119.99838 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99944 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00368 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99481 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00142 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47371 * 59.99970 * 23 21 19 25 25 H 1.48507 * 109.46946 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47116 * 299.99511 * 23 21 19 27 27 C 1.48564 * 104.28696 * 39.36610 * 14 13 11 28 28 C 1.54261 * 110.32418 * 156.42526 * 11 10 8 29 29 H 1.08994 * 110.32783 * 359.89599 * 28 11 10 30 30 O 1.42900 * 110.32267 * 237.78768 * 28 11 10 31 31 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46781 * 300.00120 * 1 2 3 33 33 H 1.09000 * 109.46773 * 59.99651 * 1 2 3 34 34 H 1.09003 * 109.46917 * 240.00023 * 2 1 3 35 35 H 1.09000 * 109.46773 * 120.00349 * 2 1 3 36 36 H 1.08996 * 109.47165 * 175.99904 * 6 4 3 37 37 H 1.09006 * 109.46508 * 55.99872 * 6 4 3 38 38 H 1.08999 * 109.46936 * 298.85045 * 7 6 4 39 39 H 1.09005 * 109.46949 * 178.84384 * 7 6 4 40 40 H 1.08999 * 109.46914 * 58.85201 * 7 6 4 41 41 H 0.97011 * 119.99544 * 359.97438 * 10 8 4 42 42 H 1.09000 * 110.40819 * 336.03214 * 13 11 10 43 43 H 1.09003 * 110.40509 * 98.47290 * 13 11 10 44 44 H 1.08996 * 109.46998 * 180.61262 * 15 14 13 45 45 H 1.08998 * 109.47029 * 300.60781 * 15 14 13 46 46 H 0.97003 * 120.00157 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00127 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.40962 * 201.78931 * 27 14 13 49 49 H 1.09008 * 110.51036 * 79.39917 * 27 14 13 50 50 H 0.96695 * 114.00162 * 180.02562 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4270 1.4614 0.1051 5 1 3.8424 0.5167 0.4560 6 6 4.0145 1.7987 -1.2667 7 6 3.7503 0.6423 -2.2330 8 6 3.7720 2.5557 1.0823 9 8 2.8924 3.2368 1.5652 10 7 5.0579 2.7774 1.4194 11 6 5.3933 3.8414 2.3688 12 1 4.6111 3.9364 3.1218 13 6 5.5884 5.1808 1.6261 14 7 6.7100 5.8444 2.3426 15 6 7.3459 6.8633 1.4968 16 6 6.3321 7.9166 1.1309 17 8 5.2217 7.8845 1.6177 18 7 6.6595 8.8942 0.2628 19 6 5.7374 9.8527 -0.0696 20 1 4.7486 9.8241 0.3638 21 6 6.0746 10.8603 -0.9650 22 7 7.2776 10.8947 -1.4928 23 14 4.8180 12.1659 -1.4185 24 1 4.4010 12.8976 -0.1955 25 1 5.4214 13.1196 -2.3838 26 1 3.6329 11.5188 -2.0365 27 6 7.6553 4.7395 2.6472 28 6 6.7513 3.5515 3.0406 29 1 7.1675 2.6166 2.6654 30 8 6.6000 3.4919 4.4603 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 5.0891 1.9557 -1.1730 37 1 3.5467 2.7060 -1.6491 38 1 4.2353 -0.2601 -1.8608 39 1 4.1509 0.8913 -3.2157 40 1 2.6765 0.4721 -2.3109 41 1 5.7614 2.2323 1.0332 42 1 5.8556 5.0025 0.5846 43 1 4.6837 5.7856 1.6893 44 1 8.1695 7.3251 2.0413 45 1 7.7275 6.3955 0.5893 46 1 7.5475 8.9196 -0.1267 47 1 7.5133 11.5983 -2.1176 48 1 8.3057 5.0138 3.4778 49 1 8.2483 4.4908 1.7670 50 1 7.4224 3.3125 4.9363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191448034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:21 Heat of formation + Delta-G solvation = -189.762640 kcal Electronic energy + Delta-G solvation = -31060.953778 eV Core-core repulsion = 26701.192310 eV Total energy + Delta-G solvation = -4359.761468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56626 -40.60123 -39.61289 -38.71280 -36.79538 -35.98162 -35.63199 -34.51146 -33.32520 -31.95939 -31.49860 -29.45567 -28.42508 -27.52963 -25.95228 -23.77143 -23.26432 -22.77775 -21.98072 -21.61585 -21.02223 -19.90818 -18.70599 -18.44393 -17.98237 -17.73596 -17.21671 -16.86462 -16.64157 -16.46814 -16.25533 -15.94367 -15.74494 -15.49541 -15.08490 -15.05509 -14.78607 -14.54085 -14.23869 -14.16412 -13.63822 -13.47108 -13.42283 -13.30286 -13.26814 -13.15333 -12.98301 -12.88390 -12.84981 -12.51336 -12.46895 -12.37838 -12.15056 -12.12335 -11.86601 -11.74937 -11.51268 -11.17999 -10.99161 -10.38941 -10.36461 -10.27099 -10.03641 -9.41818 -8.49825 -5.98184 1.36325 1.38056 1.44949 1.49003 1.69945 2.02022 2.26256 2.73602 2.89001 3.14233 3.18092 3.30914 3.55963 3.56841 3.77291 3.78432 3.88745 3.94675 4.15506 4.16324 4.25394 4.27607 4.28481 4.39888 4.46499 4.46975 4.50565 4.51752 4.64365 4.75878 4.76605 4.80220 4.89792 5.00064 5.04051 5.05009 5.14851 5.24796 5.26443 5.36718 5.37618 5.73391 5.86508 6.05081 6.09923 6.47066 6.58119 6.96541 7.10449 7.16707 7.52778 8.10570 8.67377 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.002775 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.417452 B =10085.871047 C =11941.676242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.044 3.956 3 O -0.391 6.391 4 C 0.083 3.917 5 H 0.129 0.871 6 C -0.135 4.135 7 C -0.149 4.149 8 C 0.499 3.501 9 O -0.574 6.574 10 N -0.700 5.700 11 C 0.150 3.850 12 H 0.067 0.933 13 C 0.040 3.960 14 N -0.507 5.507 15 C 0.049 3.951 16 C 0.434 3.566 17 O -0.620 6.620 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.917 5.917 23 Si 0.989 3.011 24 H -0.273 1.273 25 H -0.265 1.265 26 H -0.275 1.275 27 C 0.000 4.000 28 C 0.114 3.886 29 H 0.117 0.883 30 O -0.574 6.574 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.421 0.579 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.118 0.882 45 H 0.077 0.923 46 H 0.397 0.603 47 H 0.279 0.721 48 H 0.108 0.892 49 H 0.083 0.917 50 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 -28.922 0.490 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 O -0.310 6.310 4 C 0.022 3.978 5 H 0.146 0.854 6 C -0.174 4.174 7 C -0.206 4.206 8 C 0.286 3.714 9 O -0.452 6.452 10 N -0.356 5.356 11 C 0.043 3.957 12 H 0.085 0.915 13 C -0.089 4.089 14 N -0.232 5.232 15 C -0.082 4.082 16 C 0.221 3.779 17 O -0.506 6.506 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.558 5.558 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.189 1.189 26 H -0.200 1.200 27 C -0.127 4.127 28 C 0.054 3.946 29 H 0.135 0.865 30 O -0.384 6.384 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.260 0.740 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.136 0.864 45 H 0.095 0.905 46 H 0.232 0.768 47 H 0.088 0.912 48 H 0.127 0.873 49 H 0.101 0.899 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.605 -27.773 1.340 27.927 hybrid contribution 0.682 0.666 -1.089 1.447 sum 3.287 -27.108 0.251 27.307 Atomic orbital electron populations 1.21791 0.93639 1.03466 1.02175 1.22979 0.96123 0.82263 1.01790 1.88057 1.19929 1.28822 1.94218 1.22097 0.83743 0.97468 0.94491 0.85389 1.21965 1.01868 1.00352 0.93169 1.21807 1.02192 0.97546 0.99014 1.21575 0.82503 0.85345 0.81994 1.90755 1.49142 1.50091 1.55184 1.45716 1.07968 1.35937 1.46016 1.21322 0.98205 0.85628 0.90526 0.91454 1.23302 0.96039 0.94042 0.95559 1.65117 1.07772 1.10559 1.39767 1.21986 0.95627 0.92894 0.97715 1.20904 0.89717 0.85042 0.82228 1.90523 1.25265 1.77494 1.57352 1.41888 1.14999 1.24170 1.39849 1.19567 0.95923 1.05760 1.25219 0.90949 1.25976 0.99001 1.00035 0.95930 1.69648 1.19963 1.35363 1.30839 0.85049 0.77800 0.77565 0.78287 1.19868 1.18923 1.20027 1.24117 0.95039 0.90295 1.03276 1.22615 0.91782 0.98046 0.82189 0.86541 1.86558 1.39296 1.95009 1.17503 0.88332 0.93601 0.92516 0.90374 0.92129 0.88155 0.93489 0.90062 0.91474 0.92755 0.73974 0.93510 0.93355 0.86401 0.90530 0.76838 0.91172 0.87336 0.89864 0.74651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.28 71.98 0.74 -1.65 16 2 C 0.04 0.69 6.06 71.98 0.44 1.12 16 3 O -0.39 -9.78 9.20 -129.99 -1.20 -10.98 16 4 C 0.08 1.61 2.68 29.85 0.08 1.69 16 5 H 0.13 1.35 7.61 -2.38 -0.02 1.33 16 6 C -0.14 -2.17 5.61 30.59 0.17 -2.00 16 7 C -0.15 -1.61 9.17 71.98 0.66 -0.95 16 8 C 0.50 14.19 7.18 87.66 0.63 14.82 16 9 O -0.57 -24.28 16.18 15.96 0.26 -24.03 16 10 N -0.70 -15.03 4.99 -438.30 -2.19 -17.21 16 11 C 0.15 4.29 3.19 45.89 0.15 4.44 16 12 H 0.07 2.57 7.44 -2.39 -0.02 2.56 16 13 C 0.04 1.47 5.29 86.42 0.46 1.92 16 14 N -0.51 -17.00 5.19 -885.55 -4.60 -21.59 16 15 C 0.05 1.71 5.40 85.56 0.46 2.17 16 16 C 0.43 21.74 7.43 87.66 0.65 22.40 16 17 O -0.62 -37.18 13.96 -3.06 -0.04 -37.23 16 18 N -0.57 -30.33 5.29 -306.99 -1.62 -31.96 16 19 C -0.34 -19.84 9.68 84.04 0.81 -19.03 16 20 H 0.07 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 22 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 23 Si 0.99 44.59 29.55 68.60 2.03 46.61 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 27 C 0.00 0.00 6.24 86.45 0.54 0.54 16 28 C 0.11 2.08 4.18 31.49 0.13 2.21 16 29 H 0.12 1.02 7.65 -2.39 -0.02 1.00 16 30 O -0.57 -11.67 13.26 -148.98 -1.98 -13.65 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.82 6.14 -2.39 -0.01 0.80 16 35 H 0.06 0.77 8.03 -2.39 -0.02 0.76 16 36 H 0.10 1.09 7.80 -2.39 -0.02 1.07 16 37 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.05 0.70 6.22 -2.39 -0.01 0.68 16 41 H 0.42 4.57 8.05 -92.70 -0.75 3.82 16 42 H 0.05 1.61 7.88 -2.39 -0.02 1.59 16 43 H 0.05 2.42 6.51 -2.39 -0.02 2.40 16 44 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 45 H 0.08 2.24 7.98 -2.39 -0.02 2.22 16 46 H 0.40 19.66 7.90 -92.71 -0.73 18.92 16 47 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 48 H 0.11 1.75 8.08 -2.39 -0.02 1.73 16 49 H 0.08 1.16 7.92 -2.38 -0.02 1.14 16 50 H 0.40 3.58 9.12 -74.06 -0.68 2.91 16 Total: -1.00 -92.57 406.67 -3.84 -96.41 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -1.17 Total: 35.85 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 6.39 Total: 27.63 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -8.12 Total: -120.63 kcal Atomic # 8 Polarization: -82.92 SS G_CDS: -2.96 Total: -85.88 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -92.57 -3.84 -96.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191448034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.348 kcal (2) G-P(sol) polarization free energy of solvation -92.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds