Wall clock time and date at job start Wed Apr 1 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00014 * 2 1 4 4 C 1.52999 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46975 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47200 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47385 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00085 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99790 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.27143 * 35.63792 * 10 9 7 12 12 C 1.53994 * 110.30715 * 273.54614 * 10 9 7 13 13 N 1.47903 * 107.05424 * 242.21042 * 12 10 9 14 14 C 1.46904 * 111.00038 * 214.15460 * 13 12 10 15 15 C 1.50700 * 109.47192 * 170.00163 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00219 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47042 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.47263 * 120.00217 * 22 20 18 25 25 H 1.48501 * 109.47172 * 240.00593 * 22 20 18 26 26 C 1.48527 * 105.82321 * 334.67235 * 13 12 10 27 27 C 1.54594 * 110.39007 * 157.78064 * 10 9 7 28 28 H 1.09002 * 110.72384 * 22.55912 * 27 10 9 29 29 O 1.42902 * 110.72751 * 259.45303 * 27 10 9 30 30 H 1.09004 * 109.46966 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47286 * 300.00038 * 1 2 3 32 32 H 1.09004 * 109.46962 * 59.99860 * 1 2 3 33 33 H 1.08994 * 109.47307 * 59.99800 * 3 2 1 34 34 H 1.09004 * 109.47023 * 300.00050 * 3 2 1 35 35 H 1.08994 * 109.47394 * 59.99718 * 4 3 2 36 36 H 1.08996 * 109.46969 * 299.99720 * 4 3 2 37 37 H 1.09003 * 109.47429 * 59.99678 * 5 4 3 38 38 H 1.09004 * 109.46969 * 299.99903 * 5 4 3 39 39 H 1.09005 * 109.47288 * 60.00089 * 6 5 4 40 40 H 1.09001 * 109.47483 * 300.00498 * 6 5 4 41 41 H 0.96997 * 119.99656 * 0.02562 * 9 7 6 42 42 H 1.09001 * 109.91602 * 122.86106 * 12 10 9 43 43 H 1.08999 * 109.91843 * 1.56467 * 12 10 9 44 44 H 1.09009 * 109.46542 * 50.00194 * 14 13 12 45 45 H 1.08998 * 109.47050 * 290.00728 * 14 13 12 46 46 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 47 47 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.66931 * 157.64305 * 26 13 12 49 49 H 1.09001 * 110.66633 * 280.76824 * 26 13 12 50 50 H 0.96692 * 114.00290 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4615 0.0000 7 6 6.2960 3.8382 0.0000 8 8 5.5831 4.8195 0.0005 9 7 7.6364 3.9790 -0.0005 10 6 8.2322 5.3174 0.0000 11 1 7.6270 6.0000 0.5965 12 6 8.3673 5.8429 -1.4411 13 7 9.8104 6.0421 -1.6967 14 6 10.0345 7.1945 -2.5799 15 6 11.5060 7.5171 -2.6212 16 8 12.2909 6.8522 -1.9785 17 7 11.9492 8.5476 -3.3682 18 6 13.2872 8.8446 -3.4013 19 1 13.9860 8.2530 -2.8285 20 6 13.7442 9.9067 -4.1718 21 7 12.8938 10.6269 -4.8684 22 14 15.5672 10.3119 -4.2165 23 1 16.3075 9.3584 -3.3516 24 1 16.0645 10.2029 -5.6114 25 1 15.7789 11.6961 -3.7222 26 6 10.4307 6.2632 -0.3654 27 6 9.6770 5.2636 0.5473 28 1 10.0910 4.2604 0.4452 29 8 9.7175 5.6889 1.9110 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 3.8365 3.1228 0.8904 38 1 3.8358 3.1238 -0.8896 39 1 6.0047 1.9210 -0.8903 40 1 6.0046 1.9201 0.8897 41 1 8.2065 3.1943 -0.0013 42 1 7.8381 6.7905 -1.5420 43 1 7.9634 5.1125 -2.1421 44 1 9.4842 8.0555 -2.2003 45 1 9.6866 6.9551 -3.5848 46 1 11.3215 9.0792 -3.8825 47 1 13.2129 11.3686 -5.4060 48 1 11.4954 6.0310 -0.3937 49 1 10.2682 7.2877 -0.0307 50 1 10.6018 5.6732 2.3018 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191630659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:54 Heat of formation + Delta-G solvation = -166.144460 kcal Electronic energy + Delta-G solvation = -29481.558681 eV Core-core repulsion = 25122.821374 eV Total energy + Delta-G solvation = -4358.737307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35576 -39.13978 -38.37878 -37.82318 -35.79896 -35.12433 -34.47313 -33.84552 -31.37454 -30.83766 -29.73801 -28.01627 -27.01905 -26.34457 -24.51140 -23.94446 -21.81886 -21.53884 -20.77192 -20.34609 -19.29978 -17.96723 -17.63335 -17.19867 -16.78269 -16.76054 -16.33995 -15.96443 -15.80928 -15.43968 -15.08947 -14.77998 -14.73671 -14.43549 -14.16868 -13.83406 -13.79727 -13.29384 -13.11611 -13.07409 -12.88390 -12.51212 -12.45078 -12.13709 -12.04647 -11.88301 -11.80398 -11.69755 -11.58318 -11.35793 -11.35212 -11.04932 -11.03028 -10.63667 -10.36704 -10.27648 -10.20546 -10.09513 -9.87141 -9.54572 -9.27289 -8.46699 -8.09133 -7.97394 -6.46728 -3.87948 2.48045 2.89250 3.12767 3.23964 3.30485 3.36108 3.79161 3.83604 4.11049 4.34986 4.40509 4.48673 4.51616 4.60603 4.81836 4.83459 4.86768 4.93407 4.94871 4.99763 5.01414 5.11235 5.20732 5.20965 5.30234 5.32695 5.34916 5.36344 5.42061 5.53031 5.68495 5.77436 5.82488 5.84679 5.86829 5.96334 6.07834 6.19555 6.34324 6.47519 6.72153 7.01993 7.14033 7.32647 7.50520 7.55780 8.00312 8.06382 8.55202 9.12231 9.47807 9.98541 10.70818 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025765 B = 0.001556 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.498443 B =17993.785918 C =18685.852749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.139 4.139 7 C 0.513 3.487 8 O -0.540 6.540 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.103 0.897 12 C 0.027 3.973 13 N -0.491 5.491 14 C 0.035 3.965 15 C 0.442 3.558 16 O -0.584 6.584 17 N -0.559 5.559 18 C -0.301 4.301 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.899 5.899 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.010 3.990 27 C 0.091 3.909 28 H 0.075 0.925 29 O -0.563 6.563 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.402 0.598 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.092 0.908 46 H 0.393 0.607 47 H 0.272 0.728 48 H 0.125 0.875 49 H 0.049 0.951 50 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.677 -17.303 9.837 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.140 4.140 6 C -0.179 4.179 7 C 0.299 3.701 8 O -0.417 6.417 9 N -0.371 5.371 10 C 0.037 3.963 11 H 0.121 0.879 12 C -0.102 4.102 13 N -0.216 5.216 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.469 6.469 17 N -0.195 5.195 18 C -0.430 4.430 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.540 5.540 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.118 4.118 27 C 0.030 3.970 28 H 0.093 0.907 29 O -0.368 6.368 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.237 0.763 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.143 0.857 49 H 0.067 0.933 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -18.935 -17.399 9.779 27.511 hybrid contribution 0.774 1.240 -0.128 1.467 sum -18.161 -16.159 9.651 26.155 Atomic orbital electron populations 1.22742 0.80963 1.02751 1.00060 1.87859 1.19794 1.28304 1.95464 1.22566 0.94196 0.84486 1.00456 1.21531 0.93068 0.97562 1.03480 1.21236 0.92795 0.95986 1.03982 1.21650 0.96922 0.94576 1.04740 1.20731 0.82051 0.91785 0.75486 1.90717 1.60938 1.40847 1.49214 1.46065 1.06841 1.08701 1.75451 1.21687 0.93645 0.84853 0.96099 0.87921 1.23356 0.90360 1.01105 0.95427 1.64586 1.07753 1.38160 1.11098 1.22135 0.96749 0.92009 0.98721 1.19662 0.89043 0.83741 0.84831 1.90413 1.56938 1.52477 1.47072 1.41860 1.09064 1.27238 1.41356 1.19752 0.83396 1.13129 1.26734 0.87785 1.25280 1.00274 0.96120 0.96187 1.69624 1.34866 1.19878 1.29664 0.85792 0.82066 0.78335 0.78096 1.19195 1.20708 1.20736 1.24127 1.02673 0.97597 0.87364 1.23019 0.94246 0.97936 0.81757 0.90710 1.86457 1.34992 1.90141 1.25226 0.89632 0.94052 0.94024 0.93177 0.93131 0.90912 0.90993 0.90940 0.90846 0.88565 0.88707 0.76345 0.92725 0.89742 0.93034 0.88958 0.77387 0.91834 0.85718 0.93270 0.76791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.40 -3.39 10.70 -35.23 -0.38 -3.77 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.12 -0.77 5.58 -26.73 -0.15 -0.92 16 5 C -0.10 -0.75 4.50 -26.73 -0.12 -0.87 16 6 C -0.14 -0.95 5.70 -27.89 -0.16 -1.11 16 7 C 0.51 5.52 7.82 -10.99 -0.09 5.43 16 8 O -0.54 -8.00 15.68 5.55 0.09 -7.92 16 9 N -0.72 -7.23 5.03 -52.49 -0.26 -7.50 16 10 C 0.14 1.82 3.06 -66.57 -0.20 1.62 16 11 H 0.10 1.53 7.58 -51.93 -0.39 1.13 16 12 C 0.03 0.37 6.49 -2.75 -0.02 0.35 16 13 N -0.49 -8.02 5.26 -231.89 -1.22 -9.24 16 14 C 0.04 0.63 5.52 -4.97 -0.03 0.61 16 15 C 0.44 10.13 7.49 -10.98 -0.08 10.05 16 16 O -0.58 -14.83 13.10 5.55 0.07 -14.76 16 17 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 22 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 27 C 0.09 1.13 4.14 -24.87 -0.10 1.03 16 28 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 29 O -0.56 -6.82 13.41 -35.23 -0.47 -7.30 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.40 2.99 8.35 -40.82 -0.34 2.65 16 42 H 0.05 0.77 7.57 -51.93 -0.39 0.38 16 43 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 44 H 0.05 0.86 7.81 -51.92 -0.41 0.46 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.13 2.31 5.97 -51.93 -0.31 2.00 16 49 H 0.05 0.84 8.02 -51.93 -0.42 0.43 16 50 H 0.38 3.18 9.12 45.56 0.42 3.59 16 LS Contribution 410.91 15.07 6.19 6.19 Total: -1.00 -33.91 410.91 -7.76 -41.67 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.56 Total: 13.95 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 0.13 Total: 10.45 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.82 Total: -54.19 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.69 Total: -33.74 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.91 -7.76 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191630659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.471 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds