Wall clock time and date at job start Wed Apr 1 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00014 * 2 1 4 4 C 1.52999 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46975 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47200 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47385 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00085 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99790 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.27143 * 35.63792 * 10 9 7 12 12 C 1.53994 * 110.30715 * 273.54614 * 10 9 7 13 13 N 1.47903 * 107.05424 * 242.21042 * 12 10 9 14 14 C 1.46904 * 111.00038 * 214.15460 * 13 12 10 15 15 C 1.50700 * 109.47192 * 170.00163 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00219 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47042 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.47263 * 120.00217 * 22 20 18 25 25 H 1.48501 * 109.47172 * 240.00593 * 22 20 18 26 26 C 1.48527 * 105.82321 * 334.67235 * 13 12 10 27 27 C 1.54594 * 110.39007 * 157.78064 * 10 9 7 28 28 H 1.09002 * 110.72384 * 22.55912 * 27 10 9 29 29 O 1.42902 * 110.72751 * 259.45303 * 27 10 9 30 30 H 1.09004 * 109.46966 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47286 * 300.00038 * 1 2 3 32 32 H 1.09004 * 109.46962 * 59.99860 * 1 2 3 33 33 H 1.08994 * 109.47307 * 59.99800 * 3 2 1 34 34 H 1.09004 * 109.47023 * 300.00050 * 3 2 1 35 35 H 1.08994 * 109.47394 * 59.99718 * 4 3 2 36 36 H 1.08996 * 109.46969 * 299.99720 * 4 3 2 37 37 H 1.09003 * 109.47429 * 59.99678 * 5 4 3 38 38 H 1.09004 * 109.46969 * 299.99903 * 5 4 3 39 39 H 1.09005 * 109.47288 * 60.00089 * 6 5 4 40 40 H 1.09001 * 109.47483 * 300.00498 * 6 5 4 41 41 H 0.96997 * 119.99656 * 0.02562 * 9 7 6 42 42 H 1.09001 * 109.91602 * 122.86106 * 12 10 9 43 43 H 1.08999 * 109.91843 * 1.56467 * 12 10 9 44 44 H 1.09009 * 109.46542 * 50.00194 * 14 13 12 45 45 H 1.08998 * 109.47050 * 290.00728 * 14 13 12 46 46 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 47 47 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.66931 * 157.64305 * 26 13 12 49 49 H 1.09001 * 110.66633 * 280.76824 * 26 13 12 50 50 H 0.96692 * 114.00290 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4615 0.0000 7 6 6.2960 3.8382 0.0000 8 8 5.5831 4.8195 0.0005 9 7 7.6364 3.9790 -0.0005 10 6 8.2322 5.3174 0.0000 11 1 7.6270 6.0000 0.5965 12 6 8.3673 5.8429 -1.4411 13 7 9.8104 6.0421 -1.6967 14 6 10.0345 7.1945 -2.5799 15 6 11.5060 7.5171 -2.6212 16 8 12.2909 6.8522 -1.9785 17 7 11.9492 8.5476 -3.3682 18 6 13.2872 8.8446 -3.4013 19 1 13.9860 8.2530 -2.8285 20 6 13.7442 9.9067 -4.1718 21 7 12.8938 10.6269 -4.8684 22 14 15.5672 10.3119 -4.2165 23 1 16.3075 9.3584 -3.3516 24 1 16.0645 10.2029 -5.6114 25 1 15.7789 11.6961 -3.7222 26 6 10.4307 6.2632 -0.3654 27 6 9.6770 5.2636 0.5473 28 1 10.0910 4.2604 0.4452 29 8 9.7175 5.6889 1.9110 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 3.8365 3.1228 0.8904 38 1 3.8358 3.1238 -0.8896 39 1 6.0047 1.9210 -0.8903 40 1 6.0046 1.9201 0.8897 41 1 8.2065 3.1943 -0.0013 42 1 7.8381 6.7905 -1.5420 43 1 7.9634 5.1125 -2.1421 44 1 9.4842 8.0555 -2.2003 45 1 9.6866 6.9551 -3.5848 46 1 11.3215 9.0792 -3.8825 47 1 13.2129 11.3686 -5.4060 48 1 11.4954 6.0310 -0.3937 49 1 10.2682 7.2877 -0.0307 50 1 10.6018 5.6732 2.3018 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191630659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:53 Heat of formation + Delta-G solvation = -196.090335 kcal Electronic energy + Delta-G solvation = -29482.857232 eV Core-core repulsion = 25122.821374 eV Total energy + Delta-G solvation = -4360.035858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40429 -40.44475 -39.34619 -38.89401 -36.93850 -36.03611 -35.68991 -35.30175 -33.33215 -31.81598 -30.64919 -29.13637 -28.10516 -27.30586 -26.04687 -24.78898 -22.88871 -22.34742 -21.71058 -21.29269 -21.03684 -19.88680 -18.69554 -18.05664 -17.81678 -17.41061 -17.31613 -17.09548 -16.71288 -16.48583 -16.30182 -16.22068 -15.92308 -15.60826 -15.45000 -15.09131 -14.95791 -14.50985 -14.36981 -13.93959 -13.85420 -13.58852 -13.52236 -13.44186 -13.32296 -13.03847 -12.87512 -12.64845 -12.60535 -12.41152 -12.38941 -12.30274 -12.11528 -11.87584 -11.78188 -11.57151 -11.48558 -11.20259 -10.81537 -10.61961 -10.31641 -10.10806 -10.02149 -9.46910 -8.47837 -5.96710 1.36162 1.42158 1.56067 1.65664 2.00545 2.08404 2.26983 2.63189 2.84504 3.09608 3.18910 3.29052 3.57122 3.72463 3.86660 3.97292 3.99888 4.02842 4.19246 4.26016 4.32299 4.34474 4.36549 4.41522 4.42819 4.48551 4.53135 4.54903 4.61327 4.73296 4.77622 4.81380 4.85374 4.85886 4.87946 5.01781 5.09990 5.31213 5.38737 5.40620 5.47118 5.70308 5.79541 6.02337 6.22692 6.55485 6.57663 6.75259 7.10816 7.27048 7.52816 8.07165 8.69778 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025765 B = 0.001556 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.498443 B =17993.785918 C =18685.852749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.055 3.945 4 C -0.111 4.111 5 C -0.097 4.097 6 C -0.130 4.130 7 C 0.509 3.491 8 O -0.586 6.586 9 N -0.708 5.708 10 C 0.149 3.851 11 H 0.081 0.919 12 C 0.032 3.968 13 N -0.497 5.497 14 C 0.045 3.955 15 C 0.441 3.559 16 O -0.610 6.610 17 N -0.571 5.571 18 C -0.332 4.332 19 H 0.083 0.917 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.012 3.988 27 C 0.107 3.893 28 H 0.098 0.902 29 O -0.572 6.572 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.418 0.582 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.098 0.902 49 H 0.031 0.969 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.014 -18.860 10.033 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.022 4.022 4 C -0.148 4.148 5 C -0.136 4.136 6 C -0.169 4.169 7 C 0.298 3.702 8 O -0.466 6.466 9 N -0.361 5.361 10 C 0.042 3.958 11 H 0.099 0.901 12 C -0.097 4.097 13 N -0.222 5.222 14 C -0.087 4.087 15 C 0.229 3.771 16 O -0.496 6.496 17 N -0.208 5.208 18 C -0.461 4.461 19 H 0.101 0.899 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.117 4.117 27 C 0.047 3.953 28 H 0.116 0.884 29 O -0.380 6.380 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.256 0.744 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.116 0.884 49 H 0.049 0.951 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -19.270 -18.989 9.984 28.837 hybrid contribution 0.820 1.696 -0.139 1.889 sum -18.450 -17.292 9.845 27.136 Atomic orbital electron populations 1.22913 0.79740 1.03773 1.00712 1.87817 1.21299 1.29002 1.95598 1.22646 0.94712 0.84181 1.00632 1.21448 0.92546 0.96850 1.03968 1.21159 0.93459 0.96227 1.02724 1.21688 0.95951 0.92237 1.07073 1.21458 0.81784 0.92809 0.74124 1.90706 1.61902 1.42684 1.51274 1.45946 1.07028 1.08158 1.74920 1.21413 0.93487 0.85959 0.94921 0.90060 1.23360 0.88509 1.01343 0.96501 1.64580 1.09459 1.37167 1.11039 1.22043 0.92896 0.93313 1.00420 1.20539 0.91086 0.82407 0.83117 1.90409 1.58520 1.53049 1.47662 1.41930 1.08476 1.28153 1.42261 1.19729 0.84392 1.14084 1.27893 0.89895 1.26057 1.04401 0.95461 0.95350 1.69689 1.36513 1.20140 1.29868 0.84855 0.76951 0.78147 0.78300 1.19493 1.19726 1.19790 1.23977 1.01684 0.97697 0.88298 1.22845 0.93435 0.97749 0.81280 0.88397 1.86432 1.36642 1.90177 1.24726 0.88512 0.93362 0.93422 0.92991 0.93049 0.90425 0.90389 0.92246 0.92204 0.86140 0.86188 0.74442 0.93100 0.88695 0.91726 0.87030 0.77114 0.91329 0.88388 0.95090 0.74859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.70 10.70 -148.98 -1.59 -8.30 16 3 C 0.05 0.72 5.94 71.98 0.43 1.15 16 4 C -0.11 -1.23 5.58 30.59 0.17 -1.06 16 5 C -0.10 -1.30 4.50 30.59 0.14 -1.16 16 6 C -0.13 -1.41 5.70 29.85 0.17 -1.24 16 7 C 0.51 10.06 7.82 87.65 0.69 10.75 16 8 O -0.59 -17.08 15.68 -3.06 -0.05 -17.13 16 9 N -0.71 -12.64 5.03 -438.36 -2.20 -14.85 16 10 C 0.15 3.61 3.06 45.87 0.14 3.75 16 11 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 12 C 0.03 0.84 6.49 86.45 0.56 1.40 16 13 N -0.50 -15.85 5.26 -887.56 -4.67 -20.52 16 14 C 0.04 1.57 5.52 85.56 0.47 2.05 16 15 C 0.44 20.54 7.49 87.66 0.66 21.19 16 16 O -0.61 -31.71 13.10 -3.07 -0.04 -31.75 16 17 N -0.57 -29.01 5.29 -306.98 -1.62 -30.63 16 18 C -0.33 -18.50 9.68 84.04 0.81 -17.68 16 19 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 20 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 21 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 22 Si 0.99 42.36 29.55 68.60 2.03 44.38 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C 0.01 0.38 5.03 86.65 0.44 0.82 16 27 C 0.11 2.53 4.14 31.80 0.13 2.66 16 28 H 0.10 1.90 7.74 -2.39 -0.02 1.88 16 29 O -0.57 -13.09 13.41 -148.98 -2.00 -15.09 16 30 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.06 0.96 8.10 -2.38 -0.02 0.94 16 39 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.42 4.84 8.35 -92.71 -0.77 4.07 16 42 H 0.05 1.40 7.57 -2.39 -0.02 1.38 16 43 H 0.09 2.33 7.92 -2.39 -0.02 2.31 16 44 H 0.06 2.13 7.81 -2.38 -0.02 2.11 16 45 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 47 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.10 3.70 5.97 -2.39 -0.01 3.68 16 49 H 0.03 1.08 8.02 -2.39 -0.02 1.06 16 50 H 0.40 6.07 9.12 -74.06 -0.68 5.39 16 Total: -1.00 -74.34 410.91 -4.56 -78.90 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -1.21 Total: 40.33 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.52 Total: 23.90 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -8.21 Total: -115.25 kcal Atomic # 8 Polarization: -68.58 SS G_CDS: -3.68 Total: -72.26 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -74.34 -4.56 -78.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191630659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.192 kcal (2) G-P(sol) polarization free energy of solvation -74.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds