Wall clock time and date at job start Wed Apr 1 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99806 * 2 1 4 4 C 1.52999 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47537 * 306.07322 * 4 3 2 6 6 O 1.42893 * 109.47413 * 66.07221 * 4 3 2 7 7 C 1.42899 * 114.00395 * 269.99959 * 6 4 3 8 8 C 1.50704 * 109.47139 * 186.07408 * 4 3 2 9 9 O 1.21280 * 119.99973 * 248.94627 * 8 4 3 10 10 N 1.34773 * 120.00059 * 68.94639 * 8 4 3 11 11 C 1.47027 * 125.64958 * 4.81706 * 10 8 4 12 12 C 1.54324 * 107.27428 * 178.96180 * 11 10 8 13 13 C 1.55157 * 102.94044 * 337.81302 * 12 11 10 14 14 H 1.09007 * 111.00082 * 277.38670 * 13 12 11 15 15 N 1.46896 * 111.00231 * 153.57557 * 13 12 11 16 16 C 1.46901 * 111.00182 * 61.89335 * 15 13 12 17 17 C 1.46905 * 110.99848 * 185.84337 * 15 13 12 18 18 C 1.50702 * 109.46870 * 169.99738 * 17 15 13 19 19 O 1.21284 * 120.00597 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99831 * 180.02562 * 18 17 15 21 21 C 1.37092 * 120.00199 * 180.27834 * 20 18 17 22 22 H 1.07998 * 119.99959 * 359.72056 * 21 20 18 23 23 C 1.38952 * 120.00353 * 179.72668 * 21 20 18 24 24 N 1.31409 * 120.00154 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99787 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47282 * 90.00299 * 25 23 21 27 27 H 1.48505 * 109.46979 * 210.00546 * 25 23 21 28 28 H 1.48506 * 109.47204 * 329.99917 * 25 23 21 29 29 C 1.47418 * 125.65146 * 184.84879 * 10 8 4 30 30 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47646 * 299.99933 * 1 2 3 32 32 H 1.09001 * 109.47263 * 59.99934 * 1 2 3 33 33 H 1.08997 * 109.47096 * 60.00300 * 3 2 1 34 34 H 1.08998 * 109.46944 * 299.99928 * 3 2 1 35 35 H 1.09000 * 109.47594 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.47001 * 300.00162 * 7 6 4 37 37 H 1.08998 * 109.47109 * 59.99906 * 7 6 4 38 38 H 1.09009 * 109.87662 * 59.54666 * 11 10 8 39 39 H 1.08994 * 109.88598 * 298.38473 * 11 10 8 40 40 H 1.08995 * 110.72209 * 219.45160 * 12 11 10 41 41 H 1.08997 * 110.86784 * 96.24319 * 12 11 10 42 42 H 1.09005 * 109.46786 * 189.92360 * 16 15 13 43 43 H 1.09001 * 109.47175 * 309.92212 * 16 15 13 44 44 H 1.08998 * 109.47185 * 69.92327 * 16 15 13 45 45 H 1.09006 * 109.46892 * 50.00572 * 17 15 13 46 46 H 1.08999 * 109.47534 * 290.00093 * 17 15 13 47 47 H 0.97006 * 120.00223 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00143 * 180.02562 * 24 23 21 49 49 H 1.09002 * 110.37149 * 85.26532 * 29 10 8 50 50 H 1.08999 * 110.36812 * 322.94203 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8495 0.5529 0.8315 6 8 3.9676 0.6022 -1.2305 7 6 4.0490 -0.8242 -1.2017 8 6 4.1477 2.5535 0.1510 9 8 4.7474 3.0547 -0.7764 10 7 4.0288 3.2207 1.3160 11 6 3.4193 2.6948 2.5463 12 6 3.5313 3.7970 3.6205 13 6 4.7023 4.6718 3.1000 14 1 5.6646 4.2439 3.3813 15 7 4.5822 6.0538 3.5833 16 6 4.6460 6.1061 5.0500 17 6 5.6100 6.9133 2.9808 18 6 5.3104 8.3550 3.3016 19 8 4.3368 8.6386 3.9669 20 7 6.1243 9.3293 2.8490 21 6 5.8549 10.6404 3.1455 22 1 4.9880 10.8929 3.7380 23 6 6.6972 11.6444 2.6837 24 7 6.4392 12.9011 2.9684 25 14 8.1970 11.2076 1.6594 26 1 7.8284 11.1979 0.2209 27 1 9.2642 12.2142 1.8902 28 1 8.6910 9.8635 2.0530 29 6 4.4877 4.5988 1.5676 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 4.3835 -1.1888 -2.1729 36 1 4.7584 -1.1322 -0.4336 37 1 3.0668 -1.2397 -0.9767 38 1 3.9543 1.8029 2.8730 39 1 2.3709 2.4561 2.3679 40 1 3.7741 3.3659 4.5917 41 1 2.6112 4.3786 3.6775 42 1 4.3803 7.1072 5.3898 43 1 3.9473 5.3825 5.4701 44 1 5.6575 5.8674 5.3785 45 1 5.6117 6.7744 1.8997 46 1 6.5876 6.6472 3.3829 47 1 6.9032 9.1025 2.3171 48 1 7.0270 13.6020 2.6457 49 1 3.7270 5.3148 1.2565 50 1 5.4248 4.7882 1.0440 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192268288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:55 Heat of formation + Delta-G solvation = -154.989691 kcal Electronic energy + Delta-G solvation = -30909.905250 eV Core-core repulsion = 26551.651650 eV Total energy + Delta-G solvation = -4358.253600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60857 -40.55966 -39.58908 -38.81166 -37.90917 -36.80541 -35.83463 -33.75193 -32.78964 -31.48794 -29.84258 -29.44922 -27.99139 -26.95504 -26.60730 -25.62318 -24.43895 -23.51413 -21.42749 -21.15578 -20.64661 -20.11159 -18.78058 -18.18840 -17.94271 -17.49575 -17.22313 -16.94484 -16.80547 -16.60716 -16.19894 -16.13326 -15.85058 -15.57606 -15.33576 -15.02142 -14.87755 -14.71840 -14.55385 -14.31779 -14.24759 -13.94733 -13.67642 -13.61771 -13.33721 -13.14234 -12.86390 -12.80304 -12.59057 -12.46254 -12.42067 -12.37154 -12.19896 -11.98339 -11.88682 -11.81534 -11.47956 -11.14057 -10.82307 -10.55154 -10.37116 -10.23383 -9.80441 -9.25872 -8.41427 -6.01346 1.27653 1.28928 1.34376 1.42183 1.49267 1.95661 2.21680 2.55240 2.65525 2.86386 3.14002 3.20941 3.35720 3.61764 3.63374 3.73642 3.84963 4.02626 4.09404 4.12549 4.26766 4.32520 4.35404 4.37972 4.42026 4.51429 4.53792 4.58429 4.60053 4.63306 4.68230 4.70948 4.79390 4.86896 4.88517 4.94356 4.98081 5.09916 5.19430 5.29844 5.52910 5.86494 5.96989 5.99335 6.03614 6.17369 6.33512 6.59669 6.88928 6.93534 7.40231 7.97012 8.75995 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.002206 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.614649 B =12688.535400 C =13543.667625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.048 3.952 4 C 0.086 3.914 5 H 0.120 0.880 6 O -0.390 6.390 7 C 0.026 3.974 8 C 0.529 3.471 9 O -0.566 6.566 10 N -0.611 5.611 11 C 0.093 3.907 12 C -0.115 4.115 13 C 0.073 3.927 14 H 0.073 0.927 15 N -0.526 5.526 16 C 0.027 3.973 17 C 0.050 3.950 18 C 0.454 3.546 19 O -0.601 6.601 20 N -0.595 5.595 21 C -0.323 4.323 22 H 0.059 0.941 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.960 3.040 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.233 1.233 29 C 0.111 3.889 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.031 0.969 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.387 0.613 48 H 0.278 0.722 49 H 0.068 0.932 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -33.847 -2.138 34.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C -0.029 4.029 4 C 0.025 3.975 5 H 0.138 0.862 6 O -0.309 6.309 7 C -0.069 4.069 8 C 0.317 3.683 9 O -0.444 6.444 10 N -0.346 5.346 11 C -0.028 4.028 12 C -0.153 4.153 13 C -0.036 4.036 14 H 0.091 0.909 15 N -0.251 5.251 16 C -0.120 4.120 17 C -0.081 4.081 18 C 0.242 3.758 19 O -0.484 6.484 20 N -0.237 5.237 21 C -0.453 4.453 22 H 0.077 0.923 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.780 3.220 26 H -0.185 1.185 27 H -0.199 1.199 28 H -0.156 1.156 29 C -0.013 4.013 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.050 0.950 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.223 0.777 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.349 -33.126 -2.570 33.826 hybrid contribution 1.298 0.761 -0.276 1.529 sum -5.052 -32.365 -2.846 32.880 Atomic orbital electron populations 1.22979 0.78992 1.04243 1.00939 1.87803 1.21736 1.26478 1.95605 1.22952 0.91403 0.86267 1.02289 1.21846 0.93267 0.92009 0.90382 0.86243 1.87982 1.88024 1.22569 1.32306 1.23102 1.01937 0.78402 1.03497 1.20256 0.80042 0.86864 0.81105 1.90733 1.43457 1.69600 1.40602 1.48393 1.59443 1.15124 1.11619 1.22532 0.99810 0.98145 0.82353 1.22731 0.98423 0.95164 0.98989 1.22809 0.99715 0.88042 0.93009 0.90893 1.61525 1.47876 1.07247 1.08423 1.22452 1.00469 1.03295 0.85819 1.21881 0.95012 0.89273 1.01939 1.20775 0.84091 0.88026 0.82926 1.90509 1.30712 1.84289 1.42918 1.42076 1.26110 1.05678 1.49815 1.18990 1.11352 0.82004 1.32927 0.92321 1.26051 1.01995 0.94324 0.98952 1.69792 1.40297 1.00618 1.46716 0.85430 0.77539 0.80044 0.78948 1.18517 1.19903 1.15641 1.22211 1.00172 0.82934 0.95934 0.87793 0.92469 0.94011 0.89510 0.93291 0.88749 0.92713 0.91711 0.88156 0.88915 0.87052 0.89706 0.92798 0.88869 0.95006 0.87381 0.90340 0.77742 0.91201 0.91407 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -5.31 8.88 -145.39 -1.29 -6.60 16 3 C 0.05 0.71 5.51 71.98 0.40 1.10 16 4 C 0.09 1.53 2.30 29.85 0.07 1.60 16 5 H 0.12 1.41 7.62 -2.39 -0.02 1.39 16 6 O -0.39 -8.87 9.90 -126.04 -1.25 -10.11 16 7 C 0.03 0.37 10.71 113.37 1.21 1.59 16 8 C 0.53 12.64 7.18 87.66 0.63 13.27 16 9 O -0.57 -19.53 16.76 15.85 0.27 -19.27 16 10 N -0.61 -11.46 3.33 -811.79 -2.70 -14.16 16 11 C 0.09 0.93 6.13 86.73 0.53 1.46 16 12 C -0.12 -1.40 5.33 31.78 0.17 -1.23 16 13 C 0.07 1.38 2.71 46.31 0.13 1.50 16 14 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 15 N -0.53 -14.36 4.40 -893.40 -3.93 -18.29 16 16 C 0.03 0.72 9.09 127.69 1.16 1.88 16 17 C 0.05 1.54 5.33 85.56 0.46 2.00 16 18 C 0.45 20.37 7.54 87.66 0.66 21.03 16 19 O -0.60 -32.36 13.88 -3.04 -0.04 -32.41 16 20 N -0.59 -28.34 5.09 -306.99 -1.56 -29.91 16 21 C -0.32 -19.01 10.16 84.04 0.85 -18.16 16 22 H 0.06 4.08 7.39 -2.91 -0.02 4.05 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.93 -56.67 13.96 21.66 0.30 -56.37 16 25 Si 0.96 39.77 27.74 68.60 1.90 41.67 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 28 H -0.23 -8.20 6.52 99.48 0.65 -7.55 16 29 C 0.11 2.47 5.37 86.86 0.47 2.94 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.09 0.90 5.56 -2.39 -0.01 0.88 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 0.60 8.08 -2.39 -0.02 0.58 16 37 H 0.06 0.84 6.43 -2.39 -0.02 0.83 16 38 H 0.10 0.52 8.13 -2.38 -0.02 0.50 16 39 H 0.09 0.62 5.91 -2.39 -0.01 0.61 16 40 H 0.11 0.81 7.88 -2.39 -0.02 0.79 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.05 1.95 6.01 -2.38 -0.01 1.94 16 43 H 0.09 1.83 6.75 -2.39 -0.02 1.81 16 44 H 0.03 0.74 8.06 -2.39 -0.02 0.72 16 45 H 0.11 2.98 6.70 -2.38 -0.02 2.97 16 46 H 0.08 2.03 8.06 -2.39 -0.02 2.01 16 47 H 0.39 15.57 5.76 -92.70 -0.53 15.04 16 48 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.07 1.70 7.63 -2.39 -0.02 1.68 16 Total: -1.00 -85.76 397.94 0.51 -85.26 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.36 Total: 30.10 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 8.45 Total: 30.08 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -7.89 Total: -118.73 kcal Atomic # 8 Polarization: -66.07 SS G_CDS: -2.31 Total: -68.39 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 1.90 Total: 41.67 kcal Total: -85.76 0.51 -85.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192268288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.734 kcal (2) G-P(sol) polarization free energy of solvation -85.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds