Wall clock time and date at job start Wed Apr 1 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 114.00237 * 2 1 4 4 C 1.52993 * 109.47368 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47668 * 54.72316 * 4 3 2 6 6 O 1.42903 * 109.46859 * 294.72461 * 4 3 2 7 7 C 1.42904 * 113.99902 * 149.99975 * 6 4 3 8 8 C 1.50697 * 109.47242 * 174.72859 * 4 3 2 9 9 O 1.21284 * 120.00490 * 110.81058 * 8 4 3 10 10 N 1.34778 * 119.99891 * 290.80865 * 8 4 3 11 11 C 1.47022 * 125.64934 * 185.27637 * 10 8 4 12 12 C 1.54333 * 107.26942 * 178.96162 * 11 10 8 13 13 C 1.55158 * 102.94088 * 337.80742 * 12 11 10 14 14 H 1.08997 * 111.00171 * 277.38672 * 13 12 11 15 15 N 1.46895 * 111.00198 * 153.58089 * 13 12 11 16 16 C 1.46901 * 111.00320 * 52.66166 * 15 13 12 17 17 C 1.46898 * 111.00050 * 176.62492 * 15 13 12 18 18 C 1.50699 * 109.47226 * 169.99817 * 17 15 13 19 19 O 1.21297 * 120.00194 * 359.97438 * 18 17 15 20 20 N 1.34778 * 120.00151 * 179.97438 * 18 17 15 21 21 C 1.37101 * 120.00354 * 180.27133 * 20 18 17 22 22 H 1.07995 * 119.99488 * 359.72609 * 21 20 18 23 23 C 1.38944 * 120.00290 * 179.72664 * 21 20 18 24 24 N 1.31407 * 120.00299 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99845 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46813 * 90.00319 * 25 23 21 27 27 H 1.48497 * 109.47152 * 209.99817 * 25 23 21 28 28 H 1.48497 * 109.47148 * 330.00161 * 25 23 21 29 29 C 1.47429 * 125.64921 * 5.29869 * 10 8 4 30 30 H 1.08996 * 109.47387 * 59.99865 * 1 2 3 31 31 H 1.08993 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46866 * 300.00174 * 1 2 3 33 33 H 1.08997 * 109.46939 * 59.99410 * 3 2 1 34 34 H 1.09004 * 109.46782 * 300.00172 * 3 2 1 35 35 H 1.08995 * 109.46788 * 179.97438 * 7 6 4 36 36 H 1.08995 * 109.47483 * 300.00092 * 7 6 4 37 37 H 1.09000 * 109.47080 * 60.00405 * 7 6 4 38 38 H 1.08997 * 109.88325 * 59.54850 * 11 10 8 39 39 H 1.08993 * 110.00847 * 298.44853 * 11 10 8 40 40 H 1.08993 * 110.71653 * 219.44177 * 12 11 10 41 41 H 1.08995 * 110.86850 * 96.23820 * 12 11 10 42 42 H 1.09002 * 109.47250 * 188.87088 * 16 15 13 43 43 H 1.08993 * 109.47685 * 308.87590 * 16 15 13 44 44 H 1.08998 * 109.46750 * 68.87919 * 16 15 13 45 45 H 1.09003 * 109.47470 * 49.99475 * 17 15 13 46 46 H 1.09001 * 109.46726 * 289.99022 * 17 15 13 47 47 H 0.97000 * 119.99874 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00395 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.36571 * 85.26765 * 29 10 8 50 50 H 1.08998 * 110.36674 * 322.95049 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8506 0.5645 -0.8398 6 8 3.9663 0.5851 1.2229 7 6 5.1695 -0.1768 1.1047 8 6 4.1479 2.5554 -0.1312 9 8 4.7428 3.0456 0.8052 10 7 4.0345 3.2367 -1.2885 11 6 4.6720 4.5269 -1.5893 12 6 4.2813 4.9053 -3.0336 13 6 3.9086 3.5368 -3.6627 14 1 4.7991 3.0064 -3.9998 15 7 2.9519 3.7069 -4.7643 16 6 3.4424 4.6886 -5.7408 17 6 2.6603 2.4208 -5.4116 18 6 1.5041 2.5882 -6.3635 19 8 0.9746 3.6721 -6.4899 20 7 1.0583 1.5335 -7.0743 21 6 0.0099 1.6870 -7.9445 22 1 -0.4614 2.6521 -8.0570 23 6 -0.4460 0.6010 -8.6815 24 7 -1.4504 0.7482 -9.5159 25 14 0.3699 -1.0682 -8.4874 26 1 -0.3116 -1.8300 -7.4100 27 1 0.2698 -1.8197 -9.7643 28 1 1.8000 -0.8820 -8.1334 29 6 3.2504 2.8118 -2.4625 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 5.4295 -0.5981 2.0757 36 1 5.0200 -0.9830 0.3866 37 1 5.9769 0.4702 0.7618 38 1 5.7551 4.4325 -1.5110 39 1 4.3155 5.2895 -0.8970 40 1 5.1261 5.3530 -3.5569 41 1 3.4244 5.5789 -3.0402 42 1 2.6532 4.9128 -6.4585 43 1 3.7328 5.6025 -5.2228 44 1 4.3051 4.2787 -6.2660 45 1 2.4021 1.6823 -4.6526 46 1 3.5385 2.0840 -5.9624 47 1 1.4819 0.6667 -6.9735 48 1 -1.7685 -0.0099 -10.0307 49 1 2.2106 3.1211 -2.3563 50 1 3.3144 1.7313 -2.5905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192268289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:58 Heat of formation + Delta-G solvation = -155.450706 kcal Electronic energy + Delta-G solvation = -31519.782583 eV Core-core repulsion = 27161.508992 eV Total energy + Delta-G solvation = -4358.273591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64919 -40.52243 -39.52237 -38.78630 -37.98500 -36.70922 -35.77712 -33.71293 -33.09116 -31.24058 -29.94445 -29.41483 -27.73652 -27.12655 -26.63762 -25.58566 -24.69835 -23.32626 -21.36431 -21.15071 -20.62346 -20.10986 -18.84061 -18.16158 -17.86701 -17.50339 -17.38717 -16.83730 -16.76251 -16.47392 -16.25589 -16.17944 -15.79243 -15.55096 -15.35433 -15.18642 -14.82015 -14.66944 -14.53158 -14.35777 -14.22270 -13.91046 -13.76875 -13.52379 -13.31378 -13.09097 -12.80033 -12.74340 -12.50975 -12.40595 -12.37154 -12.36712 -12.15910 -11.94969 -11.91431 -11.81481 -11.70005 -11.42670 -10.73557 -10.52488 -10.31643 -10.19015 -9.82665 -9.22162 -8.37238 -5.97543 1.25537 1.32847 1.38710 1.47096 1.62224 2.01899 2.26309 2.52163 2.63915 2.74779 3.16207 3.20545 3.41933 3.45264 3.72139 3.75537 3.87652 4.05801 4.11185 4.19769 4.24394 4.31140 4.33116 4.40443 4.46644 4.48136 4.49499 4.53240 4.56800 4.59000 4.63822 4.71120 4.77610 4.79636 4.88353 4.88837 4.90218 5.13420 5.16132 5.30053 5.57196 5.89208 5.91395 6.02079 6.06434 6.18852 6.27691 6.64385 6.91076 6.94087 7.45606 8.03457 8.80451 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010298 B = 0.003104 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.313398 B = 9017.658410 C =10814.880181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.068 3.932 4 C 0.082 3.918 5 H 0.116 0.884 6 O -0.377 6.377 7 C 0.025 3.975 8 C 0.511 3.489 9 O -0.562 6.562 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.116 4.116 13 C 0.073 3.927 14 H 0.079 0.921 15 N -0.525 5.525 16 C 0.025 3.975 17 C 0.051 3.949 18 C 0.453 3.547 19 O -0.604 6.604 20 N -0.594 5.594 21 C -0.323 4.323 22 H 0.056 0.944 23 C -0.016 4.016 24 N -0.937 5.937 25 Si 0.962 3.038 26 H -0.257 1.257 27 H -0.279 1.279 28 H -0.229 1.229 29 C 0.098 3.902 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.033 0.967 45 H 0.121 0.879 46 H 0.081 0.919 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.083 0.917 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.754 -2.907 17.894 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.009 4.009 4 C 0.020 3.980 5 H 0.133 0.867 6 O -0.294 6.294 7 C -0.071 4.071 8 C 0.299 3.701 9 O -0.440 6.440 10 N -0.345 5.345 11 C -0.014 4.014 12 C -0.154 4.154 13 C -0.036 4.036 14 H 0.097 0.903 15 N -0.250 5.250 16 C -0.122 4.122 17 C -0.080 4.080 18 C 0.241 3.759 19 O -0.487 6.487 20 N -0.236 5.236 21 C -0.453 4.453 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.578 5.578 25 Si 0.782 3.218 26 H -0.181 1.181 27 H -0.205 1.205 28 H -0.152 1.152 29 C -0.025 4.025 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.051 0.949 45 H 0.139 0.861 46 H 0.099 0.901 47 H 0.224 0.776 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.162 -2.005 18.627 24.101 hybrid contribution 0.383 -0.757 -0.981 1.297 sum 15.544 -2.762 17.646 23.678 Atomic orbital electron populations 1.22965 0.79057 1.04205 1.00924 1.87848 1.21539 1.26689 1.95607 1.22516 0.89874 0.86205 1.02334 1.22009 0.94505 0.90969 0.90510 0.86663 1.87993 1.43348 1.67551 1.30498 1.23038 0.85273 0.94450 1.04309 1.21035 0.80476 0.87563 0.80999 1.90707 1.44660 1.69946 1.38725 1.48532 1.49471 1.22493 1.13981 1.22029 0.98167 0.84523 0.96681 1.22737 1.03273 0.96481 0.92878 1.22797 0.93432 0.97297 0.90064 0.90323 1.61480 1.44198 1.08203 1.11118 1.22454 0.98583 0.95889 0.95316 1.21915 0.95712 0.93166 0.97213 1.20860 0.87224 0.84040 0.83774 1.90531 1.61396 1.27615 1.69192 1.42043 1.31448 1.11046 1.39032 1.18976 1.09793 0.97824 1.18661 0.92613 1.26081 0.96850 1.03307 0.95166 1.69803 1.27455 1.33707 1.26864 0.85411 0.80359 0.77043 0.79006 1.18101 1.20479 1.15247 1.22611 0.95926 1.00624 0.83336 0.93077 0.88045 0.93301 0.92625 0.89636 0.87985 0.91865 0.94302 0.90639 0.91500 0.87761 0.89793 0.92815 0.89485 0.94859 0.86111 0.90150 0.77588 0.91292 0.89919 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.23 10.67 -144.61 -1.54 -9.78 16 3 C 0.07 1.31 5.50 71.98 0.40 1.70 16 4 C 0.08 1.63 2.12 29.84 0.06 1.70 16 5 H 0.12 1.77 7.18 -2.39 -0.02 1.75 16 6 O -0.38 -8.91 9.87 -125.76 -1.24 -10.16 16 7 C 0.03 0.42 10.81 113.37 1.23 1.64 16 8 C 0.51 11.74 7.16 87.66 0.63 12.37 16 9 O -0.56 -17.39 16.86 15.83 0.27 -17.13 16 10 N -0.61 -11.20 3.33 -811.79 -2.70 -13.90 16 11 C 0.11 1.76 6.87 86.73 0.60 2.36 16 12 C -0.12 -1.63 4.95 31.79 0.16 -1.48 16 13 C 0.07 1.18 2.72 46.31 0.13 1.31 16 14 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 15 N -0.53 -12.68 4.40 -893.48 -3.93 -16.61 16 16 C 0.03 0.63 9.00 127.69 1.15 1.78 16 17 C 0.05 1.31 5.36 85.56 0.46 1.77 16 18 C 0.45 18.61 7.54 87.66 0.66 19.28 16 19 O -0.60 -30.91 13.88 -3.08 -0.04 -30.95 16 20 N -0.59 -26.08 5.09 -306.98 -1.56 -27.64 16 21 C -0.32 -18.14 10.16 84.04 0.85 -17.28 16 22 H 0.06 3.76 7.39 -2.91 -0.02 3.74 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.94 -55.33 13.96 21.66 0.30 -55.03 16 25 Si 0.96 37.11 27.74 68.60 1.90 39.02 16 26 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 27 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 28 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 29 C 0.10 1.55 4.23 86.85 0.37 1.91 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.41 5.77 -2.38 -0.01 1.39 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 0.82 8.08 -2.39 -0.02 0.80 16 37 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.09 7.95 -2.39 -0.02 1.07 16 41 H 0.08 1.39 7.99 -2.39 -0.02 1.37 16 42 H 0.05 1.88 5.98 -2.39 -0.01 1.87 16 43 H 0.09 1.74 6.41 -2.39 -0.02 1.72 16 44 H 0.03 0.72 8.08 -2.39 -0.02 0.70 16 45 H 0.12 2.38 7.13 -2.39 -0.02 2.37 16 46 H 0.08 1.68 8.07 -2.39 -0.02 1.67 16 47 H 0.39 13.96 5.76 -92.71 -0.53 13.43 16 48 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 49 H 0.08 1.49 7.36 -2.39 -0.02 1.47 16 50 H 0.10 1.18 6.93 -2.39 -0.02 1.16 16 Total: -1.00 -81.50 401.12 0.20 -81.30 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.35 Total: 32.55 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 8.40 Total: 28.32 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -7.89 Total: -113.18 kcal Atomic # 8 Polarization: -65.45 SS G_CDS: -2.56 Total: -68.01 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 1.90 Total: 39.02 kcal Total: -81.50 0.20 -81.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192268289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.154 kcal (2) G-P(sol) polarization free energy of solvation -81.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds