Wall clock time and date at job start Wed Apr 1 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99813 * 2 1 4 4 H 1.08997 * 109.47363 * 30.00381 * 3 2 1 5 5 C 1.53002 * 109.47312 * 270.00332 * 3 2 1 6 6 C 1.53002 * 109.47070 * 150.00327 * 3 2 1 7 7 C 1.52998 * 109.47200 * 295.00011 * 6 3 2 8 8 C 1.50695 * 109.47385 * 179.97438 * 7 6 3 9 9 O 1.21290 * 120.00085 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99790 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.27143 * 35.63792 * 11 10 8 13 13 C 1.53994 * 110.30715 * 273.54614 * 11 10 8 14 14 N 1.47903 * 107.05424 * 242.21042 * 13 11 10 15 15 C 1.46904 * 111.00038 * 214.15460 * 14 13 11 16 16 C 1.50700 * 109.47192 * 170.00163 * 15 14 13 17 17 O 1.21293 * 119.99810 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99675 * 180.28082 * 16 15 14 19 19 C 1.37102 * 119.99634 * 179.72687 * 18 16 15 20 20 H 1.08002 * 119.99868 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99860 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00134 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99887 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47520 * 89.99803 * 23 21 19 25 25 H 1.48504 * 109.47004 * 209.99555 * 23 21 19 26 26 H 1.48497 * 109.47481 * 329.99259 * 23 21 19 27 27 C 1.48527 * 105.82321 * 334.67235 * 14 13 11 28 28 C 1.54594 * 110.39007 * 157.78064 * 11 10 8 29 29 H 1.09002 * 110.72384 * 22.55912 * 28 11 10 30 30 O 1.42902 * 110.72751 * 259.45303 * 28 11 10 31 31 H 1.08997 * 109.46594 * 299.99587 * 1 2 3 32 32 H 1.08993 * 109.47147 * 59.99828 * 1 2 3 33 33 H 1.09000 * 109.46854 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.46790 * 60.00249 * 5 3 2 35 35 H 1.08999 * 109.47113 * 179.97438 * 5 3 2 36 36 H 1.08995 * 109.47120 * 299.99796 * 5 3 2 37 37 H 1.09003 * 109.47429 * 175.00001 * 6 3 2 38 38 H 1.09004 * 109.46969 * 55.00226 * 6 3 2 39 39 H 1.09005 * 109.47288 * 60.00089 * 7 6 3 40 40 H 1.09001 * 109.47483 * 300.00498 * 7 6 3 41 41 H 0.96997 * 119.99656 * 0.02562 * 10 8 7 42 42 H 1.09001 * 109.91602 * 122.86106 * 13 11 10 43 43 H 1.08999 * 110.08310 * 1.65652 * 13 11 10 44 44 H 1.09009 * 109.46542 * 50.00194 * 15 14 13 45 45 H 1.08998 * 109.47050 * 290.00728 * 15 14 13 46 46 H 0.97001 * 120.00485 * 359.71840 * 18 16 15 47 47 H 0.97004 * 120.00488 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.66931 * 157.64305 * 27 14 13 49 49 H 1.09001 * 110.66633 * 280.76824 * 27 14 13 50 50 H 0.96692 * 114.00290 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1384 0.9184 2.1954 8 6 4.4668 0.8762 2.9056 9 8 5.4894 1.1005 2.2931 10 7 4.5187 0.5894 4.2215 11 6 5.8102 0.5489 4.9120 12 1 6.4786 1.3090 4.5077 13 6 6.4450 -0.8476 4.7769 14 7 6.5695 -1.4014 6.1427 15 6 7.7748 -2.2322 6.2660 16 6 8.0022 -2.5754 7.7157 17 8 7.2354 -2.1683 8.5628 18 7 9.0605 -3.3303 8.0715 19 6 9.2705 -3.6379 9.3909 20 1 8.5881 -3.2748 10.1452 21 6 10.3612 -4.4166 9.7577 22 7 10.5628 -4.7110 11.0224 23 14 11.5418 -5.0438 8.4530 24 1 12.6308 -4.0541 8.2537 25 1 12.1233 -6.3377 8.8926 26 1 10.8100 -5.2387 7.1756 27 6 6.6366 -0.2281 7.0509 28 6 5.6155 0.7588 6.4312 29 1 4.5995 0.5002 6.7292 30 8 5.9211 2.1055 6.7990 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2567 1.8016 -1.9562 35 1 2.6605 2.7675 -1.4425 36 1 2.8828 1.0777 -1.9564 37 1 3.8427 2.2371 0.6443 38 1 3.9931 0.5052 0.2616 39 1 2.6547 -0.0554 2.2723 40 1 2.5042 1.6764 2.6550 41 1 3.7010 0.4097 4.7112 42 1 7.4304 -0.7648 4.3185 43 1 5.8071 -1.4917 4.1718 44 1 8.6352 -1.6831 5.8833 45 1 7.6442 -3.1493 5.6916 46 1 9.6735 -3.6562 7.3940 47 1 11.3245 -5.2543 11.2785 48 1 6.3380 -0.5063 8.0616 49 1 7.6378 0.2029 7.0494 50 1 5.8144 2.2894 7.7422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192353832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:43 Heat of formation + Delta-G solvation = -155.148910 kcal Electronic energy + Delta-G solvation = -30100.746497 eV Core-core repulsion = 25742.485992 eV Total energy + Delta-G solvation = -4358.260504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39494 -39.30929 -38.64979 -37.91652 -35.83597 -34.55725 -34.05933 -33.89037 -31.75856 -31.02151 -29.95622 -28.05444 -27.14023 -26.66675 -24.82780 -23.92491 -21.71771 -21.49866 -20.80554 -20.34404 -19.46622 -18.35621 -17.69467 -17.35256 -17.16447 -16.46444 -16.01087 -15.73685 -15.46000 -15.36219 -15.15041 -14.94306 -14.79941 -14.34441 -13.92060 -13.77775 -13.48647 -13.42845 -13.21043 -13.04333 -12.92214 -12.63995 -12.60564 -12.50144 -12.37639 -12.00430 -11.91606 -11.77178 -11.72850 -11.48448 -11.44734 -11.13348 -10.99510 -10.69121 -10.59069 -10.23513 -10.06695 -10.01632 -9.85381 -9.58819 -9.28463 -8.57083 -8.25358 -8.10721 -6.35516 -3.87202 2.48935 2.92832 3.01014 3.05120 3.13514 3.37058 3.66537 3.75141 4.06893 4.20524 4.31624 4.40494 4.48119 4.63416 4.73846 4.81359 4.86590 4.89574 4.92176 4.95938 5.02397 5.12265 5.17688 5.22380 5.29334 5.30700 5.30962 5.38116 5.48575 5.57549 5.67006 5.69614 5.72473 5.74706 5.81428 5.87127 5.93118 6.01246 6.32406 6.43075 6.80115 6.95084 7.04180 7.32223 7.53037 7.53775 8.06576 8.09251 8.54380 8.89831 9.37233 9.76328 10.77240 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.001852 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.750466 B =15111.265779 C =15706.482470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.514 3.486 9 O -0.541 6.541 10 N -0.719 5.719 11 C 0.143 3.857 12 H 0.103 0.897 13 C 0.027 3.973 14 N -0.490 5.490 15 C 0.033 3.967 16 C 0.451 3.549 17 O -0.565 6.565 18 N -0.586 5.586 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.043 3.957 22 N -0.879 5.879 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.009 3.991 28 C 0.091 3.909 29 H 0.076 0.924 30 O -0.563 6.563 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.402 0.598 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.094 0.906 46 H 0.371 0.629 47 H 0.274 0.726 48 H 0.126 0.874 49 H 0.050 0.950 50 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 12.717 -21.015 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.179 4.179 8 C 0.301 3.699 9 O -0.418 6.418 10 N -0.371 5.371 11 C 0.038 3.962 12 H 0.121 0.879 13 C -0.103 4.103 14 N -0.216 5.216 15 C -0.099 4.099 16 C 0.237 3.763 17 O -0.448 6.448 18 N -0.225 5.225 19 C -0.435 4.435 20 H 0.138 0.862 21 C -0.160 4.160 22 N -0.519 5.519 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.119 4.119 28 C 0.031 3.969 29 H 0.093 0.907 30 O -0.368 6.368 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.236 0.764 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.204 0.796 47 H 0.085 0.915 48 H 0.144 0.856 49 H 0.068 0.932 50 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -17.529 12.593 -21.225 30.271 hybrid contribution 1.100 -0.192 -0.293 1.154 sum -16.429 12.402 -21.518 29.778 Atomic orbital electron populations 1.22783 0.81267 1.02789 0.99822 1.87956 1.19446 1.27807 1.95071 1.22208 0.94860 0.84647 0.95730 0.92114 1.22267 1.02311 1.01918 0.96741 1.21463 0.95627 1.03853 0.92924 1.21644 0.95089 1.04732 0.96395 1.20745 0.91630 0.75705 0.81821 1.90712 1.36389 1.48838 1.65849 1.46061 1.09425 1.71876 1.09730 1.21673 0.85794 0.97600 0.91182 0.87888 1.23360 1.00660 0.94245 0.91995 1.64584 1.36443 1.17385 1.03159 1.22173 0.91614 0.98988 0.97142 1.19567 0.83475 0.83937 0.89335 1.90456 1.46523 1.55880 1.51972 1.42197 1.24349 1.47178 1.08780 1.19423 1.11270 1.30342 0.82452 0.86212 1.25039 0.97500 0.97196 0.96311 1.69615 1.29603 1.37459 1.15191 0.86681 0.81744 0.79670 0.81388 1.19597 1.20089 1.19422 1.24152 0.98145 0.89086 1.00560 1.23003 0.98607 0.82180 0.93103 0.90653 1.86455 1.91979 1.27688 1.30685 0.94028 0.94234 0.89637 0.92548 0.91435 0.91542 0.89813 0.90087 0.88089 0.89189 0.76353 0.92745 0.89625 0.92908 0.88807 0.79603 0.91544 0.85649 0.93160 0.76726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.09 9.88 -35.23 -0.35 -3.44 16 3 C 0.08 0.56 2.72 -26.73 -0.07 0.48 16 4 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 5 C -0.17 -1.05 9.53 37.16 0.35 -0.70 16 6 C -0.10 -0.81 4.21 -26.73 -0.11 -0.92 16 7 C -0.14 -1.04 5.60 -27.89 -0.16 -1.20 16 8 C 0.51 5.65 7.82 -10.99 -0.09 5.57 16 9 O -0.54 -8.06 15.68 5.55 0.09 -7.97 16 10 N -0.72 -7.28 5.03 -52.49 -0.26 -7.55 16 11 C 0.14 1.80 3.06 -66.57 -0.20 1.59 16 12 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 13 C 0.03 0.36 6.48 -2.75 -0.02 0.34 16 14 N -0.49 -7.77 5.26 -231.89 -1.22 -8.99 16 15 C 0.03 0.55 5.52 -4.97 -0.03 0.52 16 16 C 0.45 9.99 7.49 -10.98 -0.08 9.91 16 17 O -0.57 -14.26 13.10 5.55 0.07 -14.19 16 18 N -0.59 -13.77 5.09 -10.96 -0.06 -13.83 16 19 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 22 N -0.88 -25.37 13.96 55.50 0.77 -24.60 16 23 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 27 C 0.01 0.13 5.03 -1.90 -0.01 0.13 16 28 C 0.09 1.12 4.14 -24.87 -0.10 1.02 16 29 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 30 O -0.56 -6.71 13.41 -35.23 -0.47 -7.18 16 31 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 32 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.08 0.80 8.10 -51.93 -0.42 0.37 16 39 H 0.10 0.71 7.82 -51.93 -0.41 0.30 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.40 3.05 8.35 -40.82 -0.34 2.71 16 42 H 0.05 0.74 7.57 -51.93 -0.39 0.35 16 43 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 44 H 0.05 0.81 7.81 -51.92 -0.41 0.41 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 46 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.13 2.29 5.97 -51.93 -0.31 1.98 16 49 H 0.05 0.83 8.02 -51.93 -0.42 0.42 16 50 H 0.38 3.13 9.12 45.56 0.42 3.55 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -34.89 405.84 -7.15 -42.04 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -7.45 Total: 14.65 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 0.33 Total: 10.40 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.77 Total: -54.97 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.66 Total: -32.78 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.89 -7.15 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192353832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.108 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds