Wall clock time and date at job start Wed Apr 1 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99813 * 2 1 4 4 H 1.08997 * 109.47363 * 30.00381 * 3 2 1 5 5 C 1.53002 * 109.47312 * 270.00332 * 3 2 1 6 6 C 1.53002 * 109.47070 * 150.00327 * 3 2 1 7 7 C 1.52998 * 109.47200 * 295.00011 * 6 3 2 8 8 C 1.50695 * 109.47385 * 179.97438 * 7 6 3 9 9 O 1.21290 * 120.00085 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99790 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.27143 * 35.63792 * 11 10 8 13 13 C 1.53994 * 110.30715 * 273.54614 * 11 10 8 14 14 N 1.47903 * 107.05424 * 242.21042 * 13 11 10 15 15 C 1.46904 * 111.00038 * 214.15460 * 14 13 11 16 16 C 1.50700 * 109.47192 * 170.00163 * 15 14 13 17 17 O 1.21293 * 119.99810 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99675 * 180.28082 * 16 15 14 19 19 C 1.37102 * 119.99634 * 179.72687 * 18 16 15 20 20 H 1.08002 * 119.99868 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99860 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00134 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99887 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47520 * 89.99803 * 23 21 19 25 25 H 1.48504 * 109.47004 * 209.99555 * 23 21 19 26 26 H 1.48497 * 109.47481 * 329.99259 * 23 21 19 27 27 C 1.48527 * 105.82321 * 334.67235 * 14 13 11 28 28 C 1.54594 * 110.39007 * 157.78064 * 11 10 8 29 29 H 1.09002 * 110.72384 * 22.55912 * 28 11 10 30 30 O 1.42902 * 110.72751 * 259.45303 * 28 11 10 31 31 H 1.08997 * 109.46594 * 299.99587 * 1 2 3 32 32 H 1.08993 * 109.47147 * 59.99828 * 1 2 3 33 33 H 1.09000 * 109.46854 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.46790 * 60.00249 * 5 3 2 35 35 H 1.08999 * 109.47113 * 179.97438 * 5 3 2 36 36 H 1.08995 * 109.47120 * 299.99796 * 5 3 2 37 37 H 1.09003 * 109.47429 * 175.00001 * 6 3 2 38 38 H 1.09004 * 109.46969 * 55.00226 * 6 3 2 39 39 H 1.09005 * 109.47288 * 60.00089 * 7 6 3 40 40 H 1.09001 * 109.47483 * 300.00498 * 7 6 3 41 41 H 0.96997 * 119.99656 * 0.02562 * 10 8 7 42 42 H 1.09001 * 109.91602 * 122.86106 * 13 11 10 43 43 H 1.08999 * 110.08310 * 1.65652 * 13 11 10 44 44 H 1.09009 * 109.46542 * 50.00194 * 15 14 13 45 45 H 1.08998 * 109.47050 * 290.00728 * 15 14 13 46 46 H 0.97001 * 120.00485 * 359.71840 * 18 16 15 47 47 H 0.97004 * 120.00488 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.66931 * 157.64305 * 27 14 13 49 49 H 1.09001 * 110.66633 * 280.76824 * 27 14 13 50 50 H 0.96692 * 114.00290 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1384 0.9184 2.1954 8 6 4.4668 0.8762 2.9056 9 8 5.4894 1.1005 2.2931 10 7 4.5187 0.5894 4.2215 11 6 5.8102 0.5489 4.9120 12 1 6.4786 1.3090 4.5077 13 6 6.4450 -0.8476 4.7769 14 7 6.5695 -1.4014 6.1427 15 6 7.7748 -2.2322 6.2660 16 6 8.0022 -2.5754 7.7157 17 8 7.2354 -2.1683 8.5628 18 7 9.0605 -3.3303 8.0715 19 6 9.2705 -3.6379 9.3909 20 1 8.5881 -3.2748 10.1452 21 6 10.3612 -4.4166 9.7577 22 7 10.5628 -4.7110 11.0224 23 14 11.5418 -5.0438 8.4530 24 1 12.6308 -4.0541 8.2537 25 1 12.1233 -6.3377 8.8926 26 1 10.8100 -5.2387 7.1756 27 6 6.6366 -0.2281 7.0509 28 6 5.6155 0.7588 6.4312 29 1 4.5995 0.5002 6.7292 30 8 5.9211 2.1055 6.7990 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2567 1.8016 -1.9562 35 1 2.6605 2.7675 -1.4425 36 1 2.8828 1.0777 -1.9564 37 1 3.8427 2.2371 0.6443 38 1 3.9931 0.5052 0.2616 39 1 2.6547 -0.0554 2.2723 40 1 2.5042 1.6764 2.6550 41 1 3.7010 0.4097 4.7112 42 1 7.4304 -0.7648 4.3185 43 1 5.8071 -1.4917 4.1718 44 1 8.6352 -1.6831 5.8833 45 1 7.6442 -3.1493 5.6916 46 1 9.6735 -3.6562 7.3940 47 1 11.3245 -5.2543 11.2785 48 1 6.3380 -0.5063 8.0616 49 1 7.6378 0.2029 7.0494 50 1 5.8144 2.2894 7.7422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192353832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:43 Heat of formation + Delta-G solvation = -187.087836 kcal Electronic energy + Delta-G solvation = -30102.131472 eV Core-core repulsion = 25742.485992 eV Total energy + Delta-G solvation = -4359.645480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.43640 -40.55337 -39.53582 -39.06219 -36.95390 -36.04897 -35.35075 -34.66564 -33.79034 -31.89587 -30.88572 -29.15920 -28.19478 -27.49155 -26.03813 -25.14216 -22.85109 -22.20992 -21.70447 -21.37197 -21.21896 -20.22035 -18.70900 -18.10669 -17.84015 -17.74200 -17.32939 -16.90084 -16.47973 -16.35442 -16.09994 -15.94545 -15.90588 -15.68197 -15.07305 -14.99633 -14.57051 -14.51196 -14.49856 -14.11701 -14.03629 -13.85164 -13.64775 -13.42985 -13.34215 -13.17043 -13.10824 -12.88518 -12.63600 -12.42535 -12.40713 -12.20093 -12.02966 -11.99796 -11.79691 -11.51126 -11.49443 -11.21358 -10.85021 -10.48876 -10.37821 -10.25739 -10.12771 -9.47955 -8.42778 -6.03268 1.29620 1.33492 1.42638 1.64507 1.90176 2.09152 2.21076 2.51520 2.92210 2.94864 3.13259 3.25545 3.52755 3.66693 3.83796 3.84890 3.97895 4.10889 4.14391 4.20602 4.24730 4.30198 4.37179 4.39072 4.44881 4.52547 4.56068 4.61241 4.66579 4.71386 4.80659 4.81716 4.84354 4.93948 5.01149 5.08064 5.09486 5.24539 5.34758 5.45303 5.50291 5.70341 5.79885 5.96722 6.36358 6.53858 6.56588 6.73872 6.85914 7.25389 7.36468 7.91597 8.74289 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.001852 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.750466 B =15111.265779 C =15706.482470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.085 3.915 4 H 0.081 0.919 5 C -0.175 4.175 6 C -0.099 4.099 7 C -0.129 4.129 8 C 0.512 3.488 9 O -0.584 6.584 10 N -0.708 5.708 11 C 0.149 3.851 12 H 0.084 0.916 13 C 0.032 3.968 14 N -0.500 5.500 15 C 0.041 3.959 16 C 0.452 3.548 17 O -0.601 6.601 18 N -0.589 5.589 19 C -0.326 4.326 20 H 0.060 0.940 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.960 3.040 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.233 1.233 27 C 0.010 3.990 28 C 0.107 3.893 29 H 0.096 0.904 30 O -0.571 6.571 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.417 0.583 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.121 0.879 46 H 0.388 0.612 47 H 0.279 0.721 48 H 0.095 0.905 49 H 0.035 0.965 50 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.593 12.974 -23.914 32.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.028 3.972 4 H 0.099 0.901 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.168 4.168 8 C 0.301 3.699 9 O -0.464 6.464 10 N -0.361 5.361 11 C 0.042 3.958 12 H 0.102 0.898 13 C -0.096 4.096 14 N -0.225 5.225 15 C -0.091 4.091 16 C 0.239 3.761 17 O -0.485 6.485 18 N -0.231 5.231 19 C -0.455 4.455 20 H 0.078 0.922 21 C -0.211 4.211 22 N -0.572 5.572 23 Si 0.780 3.220 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.157 1.157 27 C -0.119 4.119 28 C 0.047 3.953 29 H 0.113 0.887 30 O -0.379 6.379 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.254 0.746 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.224 0.776 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.054 0.946 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -18.485 12.865 -24.122 33.001 hybrid contribution 1.262 -0.184 0.693 1.452 sum -17.223 12.680 -23.428 31.722 Atomic orbital electron populations 1.22937 0.79955 1.03476 1.00825 1.87924 1.20989 1.28557 1.95224 1.22214 0.94316 0.84720 0.95965 0.90117 1.22270 1.02511 1.01972 0.96485 1.21418 0.96146 1.02787 0.93391 1.21648 0.93303 1.06226 0.95624 1.21374 0.92344 0.74502 0.81722 1.90699 1.38149 1.50790 1.66736 1.45951 1.09160 1.71349 1.09634 1.21436 0.86628 0.96469 0.91260 0.89819 1.23354 1.01120 0.94729 0.90436 1.64571 1.35914 1.17570 1.04490 1.22146 0.93163 1.00804 0.92939 1.20639 0.82025 0.81906 0.91496 1.90466 1.47523 1.56545 1.53965 1.42030 1.25501 1.48120 1.07420 1.19007 1.11242 1.31723 0.83570 0.92159 1.26046 0.99211 0.96698 0.99156 1.69787 1.30781 1.38488 1.18109 0.85430 0.78775 0.78793 0.78977 1.18351 1.19944 1.15659 1.23986 0.98377 0.90035 0.99471 1.22835 0.98355 0.81578 0.92580 0.88668 1.86428 1.92030 1.27133 1.32341 0.92708 0.93520 0.89226 0.91711 0.90622 0.92921 0.90207 0.92560 0.87080 0.86286 0.74576 0.92554 0.88798 0.90555 0.86074 0.77617 0.91133 0.88724 0.94617 0.74894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.41 -5.81 9.88 -148.98 -1.47 -7.28 16 3 C 0.09 0.97 2.72 30.60 0.08 1.06 16 4 H 0.08 0.60 7.79 -2.39 -0.02 0.58 16 5 C -0.17 -1.87 9.53 71.98 0.69 -1.18 16 6 C -0.10 -1.47 4.21 30.59 0.13 -1.34 16 7 C -0.13 -1.61 5.60 29.85 0.17 -1.45 16 8 C 0.51 10.34 7.82 87.65 0.69 11.03 16 9 O -0.58 -16.98 15.68 -3.06 -0.05 -17.03 16 10 N -0.71 -12.73 5.03 -438.36 -2.21 -14.93 16 11 C 0.15 3.49 3.06 45.87 0.14 3.63 16 12 H 0.08 2.36 7.58 -2.39 -0.02 2.35 16 13 C 0.03 0.81 6.48 86.45 0.56 1.37 16 14 N -0.50 -15.11 5.26 -887.56 -4.67 -19.78 16 15 C 0.04 1.30 5.52 85.56 0.47 1.77 16 16 C 0.45 20.02 7.49 87.66 0.66 20.68 16 17 O -0.60 -31.39 13.10 -3.07 -0.04 -31.43 16 18 N -0.59 -27.57 5.09 -306.98 -1.56 -29.13 16 19 C -0.33 -18.83 10.16 84.04 0.85 -17.97 16 20 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.93 -55.59 13.96 21.66 0.30 -55.29 16 23 Si 0.96 38.83 27.74 68.60 1.90 40.73 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 27 C 0.01 0.31 5.03 86.65 0.44 0.74 16 28 C 0.11 2.48 4.14 31.80 0.13 2.61 16 29 H 0.10 1.85 7.74 -2.39 -0.02 1.83 16 30 O -0.57 -12.88 13.41 -148.98 -2.00 -14.87 16 31 H 0.05 0.30 8.08 -2.39 -0.02 0.28 16 32 H 0.05 0.31 7.87 -2.39 -0.02 0.29 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.57 7.87 -2.39 -0.02 0.55 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.06 1.10 8.10 -2.38 -0.02 1.08 16 39 H 0.11 1.24 7.82 -2.38 -0.02 1.22 16 40 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.42 5.04 8.35 -92.71 -0.77 4.27 16 42 H 0.06 1.40 7.57 -2.39 -0.02 1.39 16 43 H 0.09 2.22 7.93 -2.39 -0.02 2.20 16 44 H 0.08 2.12 7.81 -2.38 -0.02 2.11 16 45 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 47 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 48 H 0.09 3.57 5.97 -2.39 -0.01 3.55 16 49 H 0.04 1.19 8.02 -2.39 -0.02 1.17 16 50 H 0.40 6.07 9.12 -74.06 -0.68 5.40 16 Total: -1.00 -80.88 405.84 -4.16 -85.04 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -1.07 Total: 41.80 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 6.70 Total: 22.17 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -8.13 Total: -119.13 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -3.56 Total: -70.61 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Total: -80.88 -4.16 -85.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192353832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.045 kcal (2) G-P(sol) polarization free energy of solvation -80.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds