Wall clock time and date at job start Wed Apr 1 2020 02:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00003 * 2 1 4 4 H 1.08999 * 109.47488 * 329.99867 * 3 2 1 5 5 C 1.52996 * 109.47188 * 90.00201 * 3 2 1 6 6 C 1.53002 * 109.47017 * 210.00074 * 3 2 1 7 7 C 1.52998 * 109.47200 * 64.99938 * 6 3 2 8 8 C 1.50695 * 109.47385 * 179.97438 * 7 6 3 9 9 O 1.21290 * 120.00085 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99790 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.27143 * 35.63792 * 11 10 8 13 13 C 1.53994 * 110.30715 * 273.54614 * 11 10 8 14 14 N 1.47903 * 107.05424 * 242.21042 * 13 11 10 15 15 C 1.46904 * 111.00038 * 214.15460 * 14 13 11 16 16 C 1.50700 * 109.47192 * 170.00163 * 15 14 13 17 17 O 1.21293 * 119.99810 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99675 * 180.28082 * 16 15 14 19 19 C 1.37102 * 119.99634 * 179.72687 * 18 16 15 20 20 H 1.08002 * 119.99868 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99860 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00219 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48491 * 109.47263 * 120.00217 * 23 21 19 26 26 H 1.48501 * 109.47172 * 240.00593 * 23 21 19 27 27 C 1.48527 * 105.82321 * 334.67235 * 14 13 11 28 28 C 1.54594 * 110.39007 * 157.78064 * 11 10 8 29 29 H 1.09002 * 110.72384 * 22.55912 * 28 11 10 30 30 O 1.42902 * 110.72751 * 259.45303 * 28 11 10 31 31 H 1.09002 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46925 * 299.99870 * 1 2 3 33 33 H 1.09002 * 109.47252 * 60.00035 * 1 2 3 34 34 H 1.08999 * 109.47179 * 59.99477 * 5 3 2 35 35 H 1.08996 * 109.47555 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47404 * 300.00028 * 5 3 2 37 37 H 1.09003 * 109.47429 * 304.99928 * 6 3 2 38 38 H 1.09004 * 109.46969 * 185.00152 * 6 3 2 39 39 H 1.09005 * 109.47288 * 60.00089 * 7 6 3 40 40 H 1.09001 * 109.47483 * 300.00498 * 7 6 3 41 41 H 0.96997 * 119.99656 * 0.02562 * 10 8 7 42 42 H 1.09001 * 109.91602 * 122.86106 * 13 11 10 43 43 H 1.08999 * 110.08310 * 1.65652 * 13 11 10 44 44 H 1.09009 * 109.46542 * 50.00194 * 15 14 13 45 45 H 1.08998 * 109.47050 * 290.00728 * 15 14 13 46 46 H 0.97001 * 120.00485 * 359.71840 * 18 16 15 47 47 H 0.97004 * 119.99542 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.66931 * 157.64305 * 27 14 13 49 49 H 1.09001 * 110.66633 * 280.76824 * 27 14 13 50 50 H 0.96692 * 114.00290 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1382 0.9183 -2.1955 8 6 4.4665 0.8774 -2.9060 9 8 5.4891 1.1014 -2.2936 10 7 4.5182 0.5917 -4.2222 11 6 5.8096 0.5513 -4.9128 12 1 6.5788 0.1514 -4.2522 13 6 6.2007 1.9597 -5.3975 14 7 6.2820 1.9036 -6.8733 15 6 7.3379 2.7923 -7.3766 16 6 7.5581 2.5298 -8.8441 17 8 6.8999 1.6858 -9.4147 18 7 8.4901 3.2294 -9.5213 19 6 8.6943 2.9867 -10.8551 20 1 8.1087 2.2347 -11.3630 21 6 9.6547 3.7083 -11.5534 22 7 10.3676 4.6230 -10.9352 23 14 9.9336 3.3772 -13.3705 24 1 9.0103 2.3070 -13.8261 25 1 9.6739 4.6171 -14.1451 26 1 11.3379 2.9444 -13.5850 27 6 6.5740 0.4865 -7.2091 28 6 5.7073 -0.3037 -6.1967 29 1 4.6740 -0.3644 -6.5384 30 8 6.2433 -1.6102 -5.9783 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.8829 1.0774 1.9563 35 1 2.6606 2.7672 1.4425 36 1 1.2569 1.8014 1.9564 37 1 3.9931 0.5051 -0.2618 38 1 3.8427 2.2370 -0.6443 39 1 2.5040 1.6765 -2.6550 40 1 2.6544 -0.0553 -2.2724 41 1 3.7003 0.4129 -4.7121 42 1 7.1691 2.2395 -4.9827 43 1 5.4441 2.6834 -5.0945 44 1 8.2624 2.6034 -6.8309 45 1 7.0375 3.8304 -7.2341 46 1 9.0162 3.9047 -9.0651 47 1 11.0383 5.1264 -11.4227 48 1 6.2706 0.2632 -8.2320 49 1 7.6317 0.2669 -7.0639 50 1 6.2026 -2.1867 -6.7536 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192353833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:47 Heat of formation + Delta-G solvation = -162.482567 kcal Electronic energy + Delta-G solvation = -30012.178133 eV Core-core repulsion = 25653.599617 eV Total energy + Delta-G solvation = -4358.578515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.34182 -39.23339 -38.60129 -37.78335 -35.77109 -34.50268 -34.03393 -33.83398 -31.37027 -30.94761 -29.84738 -27.99570 -27.12145 -26.51841 -24.82250 -24.05183 -21.70235 -21.46657 -20.75650 -20.31340 -19.29164 -17.96022 -17.62582 -17.34946 -17.11480 -16.41757 -16.01188 -15.64569 -15.50707 -15.33422 -14.99812 -14.77264 -14.72948 -14.19702 -13.90359 -13.79355 -13.64554 -13.47702 -13.09959 -13.03243 -12.94059 -12.61433 -12.48198 -12.41993 -12.10321 -11.87299 -11.73729 -11.67701 -11.58021 -11.42795 -11.34497 -11.04220 -10.97296 -10.61749 -10.36280 -10.27208 -10.18855 -10.04521 -9.81268 -9.54011 -9.23730 -8.45742 -8.08353 -7.96668 -6.46282 -3.87491 2.52955 2.96918 3.13106 3.24226 3.30799 3.38441 3.80826 3.84422 4.11717 4.33698 4.37098 4.43669 4.54982 4.68061 4.82034 4.86903 4.89862 4.93865 4.97033 5.01619 5.11819 5.15361 5.21267 5.23538 5.32090 5.33730 5.36891 5.44020 5.50948 5.68998 5.70881 5.76657 5.79110 5.84583 5.88132 5.95949 6.09217 6.20276 6.37359 6.49101 6.81396 7.03349 7.15293 7.36411 7.50951 7.58119 8.00812 8.10682 8.55723 9.12684 9.48331 9.99112 10.71257 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.001713 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.418490 B =16340.532791 C =16800.311168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.138 4.138 8 C 0.514 3.486 9 O -0.541 6.541 10 N -0.719 5.719 11 C 0.143 3.857 12 H 0.103 0.897 13 C 0.027 3.973 14 N -0.491 5.491 15 C 0.035 3.965 16 C 0.442 3.558 17 O -0.584 6.584 18 N -0.560 5.560 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.899 5.899 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.010 3.990 28 C 0.091 3.909 29 H 0.075 0.925 30 O -0.562 6.562 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.401 0.599 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.092 0.908 46 H 0.393 0.607 47 H 0.272 0.728 48 H 0.125 0.875 49 H 0.049 0.951 50 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.215 -6.340 20.047 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.178 4.178 8 C 0.301 3.699 9 O -0.417 6.417 10 N -0.371 5.371 11 C 0.037 3.963 12 H 0.121 0.879 13 C -0.102 4.102 14 N -0.216 5.216 15 C -0.096 4.096 16 C 0.227 3.773 17 O -0.469 6.469 18 N -0.195 5.195 19 C -0.430 4.430 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.540 5.540 23 Si 0.758 3.242 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.118 4.118 28 C 0.031 3.969 29 H 0.093 0.907 30 O -0.368 6.368 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.236 0.764 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.143 0.857 49 H 0.067 0.933 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -17.015 -6.362 20.389 27.307 hybrid contribution 0.644 0.204 -1.068 1.264 sum -16.371 -6.157 19.320 26.062 Atomic orbital electron populations 1.22782 0.81296 1.02720 0.99871 1.87947 1.19427 1.27898 1.95080 1.22213 0.94886 0.84598 0.95752 0.92053 1.22266 1.02290 1.01957 0.96716 1.21464 0.95589 1.03894 0.92919 1.21642 0.95127 1.04665 0.96412 1.20740 0.91620 0.75850 0.81727 1.90714 1.36330 1.48666 1.66033 1.46060 1.09409 1.72004 1.09605 1.21679 0.86593 0.94614 0.93374 0.87909 1.23350 1.01586 0.96359 0.88939 1.64585 1.43256 1.05826 1.07938 1.22136 0.93308 0.98512 0.95666 1.19665 0.83994 0.85713 0.87883 1.90414 1.50223 1.36342 1.69917 1.41861 1.32806 1.34686 1.10188 1.19753 1.18641 1.20052 0.84555 0.87783 1.25285 0.96136 0.95889 1.00600 1.69625 1.23555 1.23532 1.37318 0.85786 0.78190 0.78361 0.81912 1.19212 1.20715 1.20738 1.24129 0.98312 0.87521 1.01822 1.23015 0.97261 0.82787 0.93878 0.90739 1.86462 1.85276 1.23924 1.41110 0.89704 0.94213 0.94008 0.91576 0.91379 0.92563 0.90151 0.89725 0.89081 0.88242 0.76400 0.92747 0.89769 0.93026 0.88968 0.77386 0.91838 0.85731 0.93256 0.76820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.13 9.88 -35.23 -0.35 -3.48 16 3 C 0.08 0.58 2.72 -26.73 -0.07 0.50 16 4 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 5 C -0.17 -1.09 9.53 37.16 0.35 -0.74 16 6 C -0.10 -0.84 4.21 -26.73 -0.11 -0.95 16 7 C -0.14 -1.09 5.60 -27.89 -0.16 -1.24 16 8 C 0.51 5.86 7.82 -10.99 -0.09 5.77 16 9 O -0.54 -8.29 15.68 5.55 0.09 -8.21 16 10 N -0.72 -7.60 5.03 -52.49 -0.26 -7.87 16 11 C 0.14 1.87 3.06 -66.57 -0.20 1.67 16 12 H 0.10 1.57 7.58 -51.93 -0.39 1.18 16 13 C 0.03 0.38 6.48 -2.75 -0.02 0.36 16 14 N -0.49 -8.10 5.26 -231.89 -1.22 -9.32 16 15 C 0.04 0.64 5.52 -4.97 -0.03 0.61 16 16 C 0.44 10.18 7.49 -10.98 -0.08 10.09 16 17 O -0.58 -14.89 13.10 5.55 0.07 -14.82 16 18 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 23 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 28 C 0.09 1.16 4.14 -24.87 -0.10 1.06 16 29 H 0.07 0.84 7.74 -51.93 -0.40 0.44 16 30 O -0.56 -7.01 13.41 -35.23 -0.47 -7.49 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 33 H 0.04 0.18 8.09 -51.93 -0.42 -0.24 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.72 7.82 -51.93 -0.41 0.31 16 41 H 0.40 3.21 8.35 -40.82 -0.34 2.86 16 42 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 43 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 44 H 0.05 0.87 7.81 -51.92 -0.41 0.46 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.12 2.33 5.97 -51.93 -0.31 2.02 16 49 H 0.05 0.86 8.02 -51.93 -0.42 0.44 16 50 H 0.38 3.29 9.12 45.56 0.42 3.70 16 LS Contribution 408.96 15.07 6.16 6.16 Total: -1.00 -33.74 408.96 -7.50 -41.23 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -7.49 Total: 14.93 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 0.34 Total: 10.69 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.82 Total: -54.75 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.66 Total: -33.99 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.74 -7.50 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192353833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.250 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds