Wall clock time and date at job start Wed Apr 1 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00003 * 2 1 4 4 H 1.08999 * 109.47488 * 329.99867 * 3 2 1 5 5 C 1.52996 * 109.47188 * 90.00201 * 3 2 1 6 6 C 1.53002 * 109.47017 * 210.00074 * 3 2 1 7 7 C 1.52998 * 109.47200 * 64.99938 * 6 3 2 8 8 C 1.50695 * 109.47385 * 179.97438 * 7 6 3 9 9 O 1.21290 * 120.00085 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99790 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.27143 * 35.63792 * 11 10 8 13 13 C 1.53994 * 110.30715 * 273.54614 * 11 10 8 14 14 N 1.47903 * 107.05424 * 242.21042 * 13 11 10 15 15 C 1.46904 * 111.00038 * 214.15460 * 14 13 11 16 16 C 1.50700 * 109.47192 * 170.00163 * 15 14 13 17 17 O 1.21293 * 119.99810 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99675 * 180.28082 * 16 15 14 19 19 C 1.37102 * 119.99634 * 179.72687 * 18 16 15 20 20 H 1.08002 * 119.99868 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99860 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00219 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48491 * 109.47263 * 120.00217 * 23 21 19 26 26 H 1.48501 * 109.47172 * 240.00593 * 23 21 19 27 27 C 1.48527 * 105.82321 * 334.67235 * 14 13 11 28 28 C 1.54594 * 110.39007 * 157.78064 * 11 10 8 29 29 H 1.09002 * 110.72384 * 22.55912 * 28 11 10 30 30 O 1.42902 * 110.72751 * 259.45303 * 28 11 10 31 31 H 1.09002 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46925 * 299.99870 * 1 2 3 33 33 H 1.09002 * 109.47252 * 60.00035 * 1 2 3 34 34 H 1.08999 * 109.47179 * 59.99477 * 5 3 2 35 35 H 1.08996 * 109.47555 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47404 * 300.00028 * 5 3 2 37 37 H 1.09003 * 109.47429 * 304.99928 * 6 3 2 38 38 H 1.09004 * 109.46969 * 185.00152 * 6 3 2 39 39 H 1.09005 * 109.47288 * 60.00089 * 7 6 3 40 40 H 1.09001 * 109.47483 * 300.00498 * 7 6 3 41 41 H 0.96997 * 119.99656 * 0.02562 * 10 8 7 42 42 H 1.09001 * 109.91602 * 122.86106 * 13 11 10 43 43 H 1.08999 * 110.08310 * 1.65652 * 13 11 10 44 44 H 1.09009 * 109.46542 * 50.00194 * 15 14 13 45 45 H 1.08998 * 109.47050 * 290.00728 * 15 14 13 46 46 H 0.97001 * 120.00485 * 359.71840 * 18 16 15 47 47 H 0.97004 * 119.99542 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.66931 * 157.64305 * 27 14 13 49 49 H 1.09001 * 110.66633 * 280.76824 * 27 14 13 50 50 H 0.96692 * 114.00290 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1382 0.9183 -2.1955 8 6 4.4665 0.8774 -2.9060 9 8 5.4891 1.1014 -2.2936 10 7 4.5182 0.5917 -4.2222 11 6 5.8096 0.5513 -4.9128 12 1 6.5788 0.1514 -4.2522 13 6 6.2007 1.9597 -5.3975 14 7 6.2820 1.9036 -6.8733 15 6 7.3379 2.7923 -7.3766 16 6 7.5581 2.5298 -8.8441 17 8 6.8999 1.6858 -9.4147 18 7 8.4901 3.2294 -9.5213 19 6 8.6943 2.9867 -10.8551 20 1 8.1087 2.2347 -11.3630 21 6 9.6547 3.7083 -11.5534 22 7 10.3676 4.6230 -10.9352 23 14 9.9336 3.3772 -13.3705 24 1 9.0103 2.3070 -13.8261 25 1 9.6739 4.6171 -14.1451 26 1 11.3379 2.9444 -13.5850 27 6 6.5740 0.4865 -7.2091 28 6 5.7073 -0.3037 -6.1967 29 1 4.6740 -0.3644 -6.5384 30 8 6.2433 -1.6102 -5.9783 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.8829 1.0774 1.9563 35 1 2.6606 2.7672 1.4425 36 1 1.2569 1.8014 1.9564 37 1 3.9931 0.5051 -0.2618 38 1 3.8427 2.2370 -0.6443 39 1 2.5040 1.6765 -2.6550 40 1 2.6544 -0.0553 -2.2724 41 1 3.7003 0.4129 -4.7121 42 1 7.1691 2.2395 -4.9827 43 1 5.4441 2.6834 -5.0945 44 1 8.2624 2.6034 -6.8309 45 1 7.0375 3.8304 -7.2341 46 1 9.0162 3.9047 -9.0651 47 1 11.0383 5.1264 -11.4227 48 1 6.2706 0.2632 -8.2320 49 1 7.6317 0.2669 -7.0639 50 1 6.2026 -2.1867 -6.7536 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192353833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:46 Heat of formation + Delta-G solvation = -192.268934 kcal Electronic energy + Delta-G solvation = -30013.469766 eV Core-core repulsion = 25653.599617 eV Total energy + Delta-G solvation = -4359.870149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41744 -40.48040 -39.48478 -39.04823 -36.94280 -36.00952 -35.33769 -34.66784 -33.33207 -31.85602 -30.84771 -29.15698 -28.08370 -27.48902 -26.17271 -25.18723 -22.88171 -22.21065 -21.70788 -21.31159 -21.04313 -19.88729 -18.71206 -18.11686 -17.82024 -17.75975 -17.34458 -16.71284 -16.41083 -16.27801 -16.25700 -15.95725 -15.87422 -15.63203 -15.39864 -14.98446 -14.55826 -14.44815 -14.32647 -14.01448 -13.83296 -13.68351 -13.53170 -13.44000 -13.30391 -13.16949 -13.04048 -12.87650 -12.61708 -12.41420 -12.40435 -12.20148 -12.11606 -12.03112 -11.79119 -11.51293 -11.48465 -11.21157 -10.85019 -10.49098 -10.32100 -10.11221 -10.02192 -9.47047 -8.47842 -5.96732 1.36202 1.42114 1.56081 1.64328 2.00580 2.08839 2.26984 2.63012 2.92043 3.09144 3.18790 3.28734 3.56700 3.67235 3.83769 3.86009 3.98450 4.14565 4.18920 4.23834 4.26637 4.32904 4.38528 4.41942 4.48021 4.52914 4.56357 4.61778 4.66523 4.71469 4.80615 4.81611 4.84292 4.93594 5.01043 5.08758 5.09831 5.24383 5.34603 5.40505 5.45064 5.70145 5.79242 6.02316 6.36024 6.53911 6.57646 6.74878 7.10767 7.25528 7.52825 8.07198 8.69737 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.001713 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.418490 B =16340.532791 C =16800.311168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.086 3.914 4 H 0.081 0.919 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.128 4.128 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.708 5.708 11 C 0.149 3.851 12 H 0.081 0.919 13 C 0.032 3.968 14 N -0.496 5.496 15 C 0.045 3.955 16 C 0.441 3.559 17 O -0.610 6.610 18 N -0.571 5.571 19 C -0.332 4.332 20 H 0.083 0.917 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.012 3.988 28 C 0.107 3.893 29 H 0.098 0.902 30 O -0.572 6.572 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.417 0.583 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.099 0.901 49 H 0.031 0.969 50 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.001 -6.144 20.344 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.028 3.972 4 H 0.099 0.901 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.167 4.167 8 C 0.300 3.700 9 O -0.464 6.464 10 N -0.360 5.360 11 C 0.042 3.958 12 H 0.099 0.901 13 C -0.097 4.097 14 N -0.222 5.222 15 C -0.087 4.087 16 C 0.229 3.771 17 O -0.497 6.497 18 N -0.208 5.208 19 C -0.461 4.461 20 H 0.101 0.899 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.117 4.117 28 C 0.047 3.953 29 H 0.116 0.884 30 O -0.380 6.380 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.255 0.745 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.117 0.883 49 H 0.050 0.950 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -18.837 -6.179 20.686 28.652 hybrid contribution 1.168 0.090 -1.109 1.613 sum -17.670 -6.089 19.577 27.066 Atomic orbital electron populations 1.22944 0.79926 1.03502 1.00837 1.87917 1.21022 1.28555 1.95227 1.22207 0.94286 0.84725 0.95963 0.90083 1.22269 1.02520 1.01968 0.96480 1.21422 0.96162 1.02787 0.93406 1.21647 0.93238 1.06234 0.95608 1.21405 0.92377 0.74615 0.81627 1.90701 1.38153 1.50665 1.66927 1.45937 1.09088 1.71476 1.09520 1.21421 0.87364 0.93915 0.93099 0.90134 1.23351 1.01887 0.97325 0.87089 1.64582 1.42437 1.05605 1.09575 1.22047 0.94665 0.99992 0.91983 1.20537 0.82519 0.84311 0.89759 1.90409 1.50833 1.37159 1.71256 1.41930 1.33722 1.35397 1.09778 1.19730 1.19682 1.20735 0.85955 0.89891 1.26070 0.95375 0.95343 1.04578 1.69690 1.23773 1.23884 1.38839 0.84842 0.78172 0.78310 0.76840 1.19534 1.19701 1.19802 1.23979 0.97920 0.88249 1.01519 1.22847 0.97496 0.82513 0.92468 0.88437 1.86438 1.85369 1.23808 1.42390 0.89136 0.93530 0.92724 0.92928 0.90654 0.91668 0.92689 0.90160 0.86125 0.87124 0.74521 0.93070 0.88607 0.91721 0.86964 0.77104 0.91326 0.88342 0.95048 0.74870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.41 -5.94 9.88 -148.98 -1.47 -7.42 16 3 C 0.09 1.03 2.72 30.59 0.08 1.12 16 4 H 0.08 0.66 7.79 -2.39 -0.02 0.64 16 5 C -0.17 -1.98 9.53 71.98 0.69 -1.30 16 6 C -0.10 -1.56 4.21 30.59 0.13 -1.43 16 7 C -0.13 -1.71 5.60 29.85 0.17 -1.54 16 8 C 0.51 10.91 7.82 87.65 0.69 11.60 16 9 O -0.58 -17.83 15.68 -3.06 -0.05 -17.88 16 10 N -0.71 -13.51 5.03 -438.36 -2.21 -15.72 16 11 C 0.15 3.72 3.06 45.87 0.14 3.86 16 12 H 0.08 2.45 7.58 -2.39 -0.02 2.43 16 13 C 0.03 0.87 6.48 86.45 0.56 1.43 16 14 N -0.50 -15.95 5.26 -887.56 -4.67 -20.62 16 15 C 0.04 1.57 5.52 85.56 0.47 2.05 16 16 C 0.44 20.60 7.49 87.66 0.66 21.25 16 17 O -0.61 -31.81 13.10 -3.07 -0.04 -31.85 16 18 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 19 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 20 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 21 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 22 N -0.92 -49.59 13.05 21.66 0.28 -49.30 16 23 Si 0.99 42.45 29.55 68.60 2.03 44.47 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 C 0.01 0.38 5.03 86.65 0.44 0.82 16 28 C 0.11 2.60 4.14 31.80 0.13 2.74 16 29 H 0.10 1.96 7.74 -2.39 -0.02 1.94 16 30 O -0.57 -13.59 13.41 -148.98 -2.00 -15.58 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.32 7.87 -2.38 -0.02 0.30 16 33 H 0.05 0.32 8.09 -2.39 -0.02 0.30 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 37 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.08 1.30 8.10 -2.38 -0.02 1.28 16 39 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.11 1.30 7.82 -2.39 -0.02 1.28 16 41 H 0.42 5.38 8.35 -92.71 -0.77 4.60 16 42 H 0.05 1.42 7.57 -2.39 -0.02 1.40 16 43 H 0.10 2.37 7.93 -2.39 -0.02 2.35 16 44 H 0.06 2.14 7.81 -2.38 -0.02 2.12 16 45 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 46 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 47 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 48 H 0.10 3.75 5.97 -2.39 -0.01 3.73 16 49 H 0.03 1.11 8.02 -2.39 -0.02 1.09 16 50 H 0.40 6.36 9.12 -74.06 -0.68 5.69 16 Total: -1.00 -74.04 408.96 -4.30 -78.34 By element: Atomic # 1 Polarization: 43.42 SS G_CDS: -1.21 Total: 42.21 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.65 Total: 24.04 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -8.21 Total: -116.33 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -3.56 Total: -72.73 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -74.04 -4.30 -78.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192353833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.931 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds