Wall clock time and date at job start Wed Apr 1 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00109 * 2 1 4 4 C 1.52995 * 109.47456 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46977 * 304.99763 * 4 3 2 6 6 O 1.42904 * 109.47235 * 64.99595 * 4 3 2 7 7 C 1.42904 * 114.00046 * 270.00269 * 6 4 3 8 8 C 1.50699 * 109.47368 * 184.99932 * 4 3 2 9 9 O 1.21285 * 119.99646 * 244.99492 * 8 4 3 10 10 N 1.34774 * 120.00121 * 64.99656 * 8 4 3 11 11 C 1.47616 * 118.74831 * 359.97438 * 10 8 4 12 12 C 1.53798 * 111.30021 * 138.33642 * 11 10 8 13 13 C 1.51275 * 109.63283 * 319.96334 * 12 11 10 14 14 N 1.46196 * 109.09705 * 92.41021 * 13 12 11 15 15 C 1.46902 * 110.99999 * 144.76233 * 14 13 12 16 16 C 1.50701 * 109.47237 * 197.08365 * 15 14 13 17 17 O 1.21286 * 119.99741 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00016 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99928 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00053 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99677 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00500 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99750 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47203 * 60.00007 * 23 21 19 25 25 H 1.48498 * 109.47234 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47171 * 300.00093 * 23 21 19 27 27 C 1.41438 * 116.34841 * 272.96874 * 14 13 12 28 28 C 1.44883 * 118.74995 * 180.02562 * 10 8 4 29 29 H 1.09000 * 109.46973 * 300.00119 * 1 2 3 30 30 H 1.08994 * 109.46914 * 60.00221 * 1 2 3 31 31 H 1.09000 * 109.46652 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47528 * 59.99687 * 3 2 1 33 33 H 1.09008 * 109.46850 * 300.00074 * 3 2 1 34 34 H 1.08999 * 109.46724 * 59.99660 * 7 6 4 35 35 H 1.09000 * 109.47178 * 180.02562 * 7 6 4 36 36 H 1.09007 * 109.46833 * 300.00198 * 7 6 4 37 37 H 1.09002 * 109.11006 * 17.87557 * 11 10 8 38 38 H 1.08993 * 109.06544 * 258.78074 * 11 10 8 39 39 H 1.08999 * 109.44825 * 199.90877 * 12 11 10 40 40 H 1.08998 * 109.43913 * 80.01051 * 12 11 10 41 41 H 1.09005 * 109.53136 * 332.52680 * 13 12 11 42 42 H 1.09001 * 109.59456 * 212.33602 * 13 12 11 43 43 H 1.09001 * 109.46994 * 317.08487 * 15 14 13 44 44 H 1.09002 * 109.46985 * 77.08210 * 15 14 13 45 45 H 0.97003 * 120.00191 * 0.02562 * 18 16 15 46 46 H 0.96994 * 120.00323 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.38702 * 303.32291 * 27 14 13 48 48 H 1.09001 * 109.38552 * 183.63465 * 27 14 13 49 49 H 1.08994 * 109.43521 * 149.63425 * 28 10 8 50 50 H 1.09004 * 109.43413 * 29.77291 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8515 0.5683 0.8410 6 8 3.9649 0.5796 -1.2220 7 6 4.0464 -0.8460 -1.1671 8 6 4.1480 2.5560 0.1232 9 8 4.8063 3.0106 -0.7884 10 7 3.9644 3.2772 1.2468 11 6 3.1579 2.6973 2.3388 12 6 3.7930 2.9764 3.7114 13 6 5.2952 2.8256 3.6165 14 7 5.8888 4.1280 3.3183 15 6 7.1860 4.2816 3.9903 16 6 7.5681 5.7391 4.0177 17 8 6.8320 6.5683 3.5263 18 7 8.7279 6.1211 4.5883 19 6 9.0752 7.4471 4.6137 20 1 8.4198 8.1855 4.1761 21 6 10.2711 7.8408 5.2016 22 7 11.0689 6.9423 5.7336 23 14 10.7441 9.6476 5.2368 24 1 9.7108 10.4154 5.9768 25 1 12.0565 9.8026 5.9142 26 1 10.8415 10.1610 3.8468 27 6 5.9818 4.4773 1.9509 28 6 4.5651 4.5925 1.3366 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.0646 -1.2572 -0.9322 35 1 4.3795 -1.2283 -2.1320 36 1 4.7576 -1.1398 -0.3950 37 1 3.0823 1.6197 2.1931 38 1 2.1586 3.1318 2.3128 39 1 3.4027 2.2685 4.4426 40 1 3.5493 3.9917 4.0241 41 1 5.5413 2.1223 2.8209 42 1 5.6861 2.4553 4.5642 43 1 7.1132 3.9058 5.0109 44 1 7.9449 3.7171 3.4485 45 1 9.3168 5.4578 4.9811 46 1 11.9035 7.2172 6.1442 47 1 6.5455 3.7107 1.4192 48 1 6.4960 5.4337 1.8559 49 1 3.9470 5.2312 1.9675 50 1 4.6358 5.0278 0.3398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197093906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:53 Heat of formation + Delta-G solvation = -153.447106 kcal Electronic energy + Delta-G solvation = -31667.921156 eV Core-core repulsion = 27309.734448 eV Total energy + Delta-G solvation = -4358.186708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88201 -40.51897 -39.42153 -38.69629 -37.89617 -36.47266 -35.76305 -33.67052 -33.26598 -32.35300 -30.22051 -28.28071 -27.85803 -27.20128 -26.71712 -25.75211 -24.80531 -22.96107 -21.73560 -21.07900 -20.31148 -19.86075 -18.76182 -18.12912 -17.76424 -17.69720 -17.00575 -16.92486 -16.69529 -16.60076 -16.37844 -16.10591 -16.01116 -15.67080 -15.52715 -15.33669 -14.96842 -14.66679 -14.50932 -14.27267 -14.06083 -13.78557 -13.52156 -13.28552 -13.06281 -13.00994 -12.84475 -12.71839 -12.57942 -12.48082 -12.41812 -12.30674 -12.18190 -12.12986 -11.86945 -11.79873 -11.44342 -11.02819 -10.76055 -10.52173 -10.27094 -9.99353 -9.76820 -9.09498 -8.45215 -5.93563 1.32417 1.39838 1.41463 1.52254 1.62754 2.07258 2.28891 2.63930 2.74765 2.81624 3.21512 3.38954 3.51629 3.66776 3.79880 3.86346 3.96881 4.09831 4.12778 4.23124 4.29052 4.32264 4.41226 4.41866 4.50235 4.51949 4.54136 4.55284 4.60674 4.63363 4.67616 4.74548 4.80270 4.87716 4.90724 4.94324 4.98634 5.10573 5.30188 5.41894 5.54280 5.92590 5.95755 6.06877 6.14013 6.22756 6.51996 6.62155 6.99946 7.14391 7.58434 8.14004 8.71913 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.002181 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.389522 B =12835.794641 C =13056.009756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.046 3.954 4 C 0.081 3.919 5 H 0.115 0.885 6 O -0.391 6.391 7 C 0.027 3.973 8 C 0.506 3.494 9 O -0.567 6.567 10 N -0.595 5.595 11 C 0.094 3.906 12 C -0.126 4.126 13 C 0.067 3.933 14 N -0.547 5.547 15 C 0.065 3.935 16 C 0.440 3.560 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.274 1.274 27 C 0.072 3.928 28 C 0.133 3.867 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.055 0.945 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.000 1.000 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.168 -19.482 -4.472 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C -0.031 4.031 4 C 0.019 3.981 5 H 0.133 0.867 6 O -0.309 6.309 7 C -0.069 4.069 8 C 0.294 3.706 9 O -0.445 6.445 10 N -0.329 5.329 11 C -0.026 4.026 12 C -0.164 4.164 13 C -0.059 4.059 14 N -0.272 5.272 15 C -0.066 4.066 16 C 0.227 3.773 17 O -0.497 6.497 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.200 1.200 27 C -0.058 4.058 28 C 0.010 3.990 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.110 0.890 43 H 0.135 0.865 44 H 0.073 0.927 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.018 0.982 48 H 0.088 0.912 49 H 0.114 0.886 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.293 -18.442 -5.167 28.640 hybrid contribution 1.440 0.366 -0.145 1.492 sum -19.854 -18.076 -5.311 27.371 Atomic orbital electron populations 1.22984 0.78915 1.04202 1.01052 1.87812 1.21832 1.26547 1.95632 1.23094 0.90884 0.86368 1.02799 1.21946 0.93829 0.91968 0.90314 0.86730 1.87980 1.88220 1.22165 1.32545 1.23092 1.01930 0.78562 1.03320 1.20767 0.80551 0.87103 0.82216 1.90718 1.41368 1.71560 1.40822 1.47996 1.51793 1.16912 1.16185 1.22620 0.94523 0.99742 0.85762 1.21901 0.93699 1.04461 0.96349 1.21741 0.96121 0.86883 1.01166 1.57835 1.24253 1.32074 1.13058 1.21738 0.91076 0.92392 1.01390 1.20836 0.82169 0.91782 0.82463 1.90454 1.53048 1.55171 1.51009 1.41952 1.18889 1.08367 1.52147 1.19607 1.04654 0.84801 1.36917 0.90274 1.26030 0.95378 1.04101 0.95938 1.69663 1.12532 1.35534 1.38528 0.85003 0.77690 0.77212 0.78520 1.19538 1.19578 1.19958 1.21524 0.97312 0.99822 0.87145 1.21341 0.93064 0.83796 1.00828 0.92197 0.93944 0.87980 0.88711 0.93102 0.91368 0.88801 0.93219 0.87796 0.88662 0.86312 0.90952 0.94820 0.89023 0.86511 0.92711 0.77129 0.91379 0.98244 0.91245 0.88601 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -5.47 8.83 -144.34 -1.27 -6.74 16 3 C 0.05 0.68 5.18 71.98 0.37 1.06 16 4 C 0.08 1.63 2.07 29.85 0.06 1.70 16 5 H 0.12 1.75 6.78 -2.38 -0.02 1.74 16 6 O -0.39 -9.91 9.88 -125.59 -1.24 -11.15 16 7 C 0.03 0.45 10.71 113.37 1.21 1.66 16 8 C 0.51 13.78 7.06 87.66 0.62 14.40 16 9 O -0.57 -21.59 15.94 15.95 0.25 -21.34 16 10 N -0.60 -13.61 2.18 -817.77 -1.78 -15.39 16 11 C 0.09 1.22 4.54 86.43 0.39 1.62 16 12 C -0.13 -1.82 5.78 30.30 0.18 -1.65 16 13 C 0.07 1.41 5.32 85.87 0.46 1.87 16 14 N -0.55 -17.04 3.60 -916.04 -3.30 -20.34 16 15 C 0.06 2.23 5.44 85.56 0.47 2.70 16 16 C 0.44 20.91 7.37 87.66 0.65 21.55 16 17 O -0.61 -33.23 13.97 -3.05 -0.04 -33.27 16 18 N -0.58 -29.75 5.29 -306.99 -1.62 -31.37 16 19 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.92 -50.21 13.05 21.66 0.28 -49.92 16 23 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.07 2.54 5.01 87.93 0.44 2.98 16 28 C 0.13 3.94 5.52 87.31 0.48 4.42 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.92 5.17 -2.39 -0.01 0.91 16 33 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.07 1.01 6.40 -2.39 -0.02 1.00 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 0.72 8.09 -2.38 -0.02 0.70 16 37 H 0.10 0.89 5.12 -2.39 -0.01 0.88 16 38 H 0.10 0.84 7.55 -2.39 -0.02 0.82 16 39 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 1.36 7.98 -2.39 -0.02 1.34 16 41 H 0.03 0.73 7.32 -2.38 -0.02 0.71 16 42 H 0.09 1.60 7.36 -2.39 -0.02 1.58 16 43 H 0.12 3.37 7.57 -2.39 -0.02 3.35 16 44 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 45 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 46 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 47 H 0.00 -0.01 8.12 -2.38 -0.02 -0.03 16 48 H 0.07 3.05 5.62 -2.39 -0.01 3.03 16 49 H 0.10 2.69 8.11 -2.39 -0.02 2.67 16 50 H 0.07 2.30 7.28 -2.38 -0.02 2.28 16 Total: -1.00 -78.83 392.59 1.38 -77.45 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.23 Total: 31.23 kcal Atomic # 6 Polarization: 27.51 SS G_CDS: 7.85 Total: 35.36 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -6.43 Total: -117.02 kcal Atomic # 8 Polarization: -70.20 SS G_CDS: -2.30 Total: -72.50 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -78.83 1.38 -77.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197093906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.998 kcal (2) G-P(sol) polarization free energy of solvation -78.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds