Wall clock time and date at job start Wed Apr 1 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00257 * 2 1 4 4 C 1.53006 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46595 * 54.65913 * 4 3 2 6 6 O 1.42897 * 109.46920 * 294.66267 * 4 3 2 7 7 C 1.42904 * 114.00106 * 150.00249 * 6 4 3 8 8 C 1.50695 * 109.47105 * 174.65926 * 4 3 2 9 9 O 1.21280 * 119.99842 * 111.91910 * 8 4 3 10 10 N 1.34782 * 119.99808 * 291.91990 * 8 4 3 11 11 C 1.47614 * 118.74910 * 355.85888 * 10 8 4 12 12 C 1.53794 * 111.25191 * 138.35093 * 11 10 8 13 13 C 1.51178 * 109.65790 * 319.84627 * 12 11 10 14 14 N 1.46196 * 109.04163 * 92.49889 * 13 12 11 15 15 C 1.46895 * 111.00102 * 144.77604 * 14 13 12 16 16 C 1.50696 * 109.47477 * 197.08120 * 15 14 13 17 17 O 1.21301 * 119.99805 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00235 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99905 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99931 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99823 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99982 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99907 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47380 * 89.99404 * 23 21 19 25 25 H 1.48499 * 109.47056 * 209.99563 * 23 21 19 26 26 H 1.48505 * 109.47219 * 329.99225 * 23 21 19 27 27 C 1.41441 * 116.34363 * 272.97981 * 14 13 12 28 28 C 1.44887 * 118.74370 * 175.83902 * 10 8 4 29 29 H 1.08996 * 109.47520 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46995 * 300.00511 * 1 2 3 31 31 H 1.09007 * 109.46766 * 60.00274 * 1 2 3 32 32 H 1.08996 * 109.47147 * 59.99748 * 3 2 1 33 33 H 1.08995 * 109.46920 * 299.99591 * 3 2 1 34 34 H 1.08999 * 109.47285 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46626 * 299.99276 * 7 6 4 36 36 H 1.08994 * 109.46928 * 59.99194 * 7 6 4 37 37 H 1.08999 * 109.11473 * 258.78826 * 11 10 8 38 38 H 1.08998 * 109.11124 * 17.91340 * 11 10 8 39 39 H 1.08998 * 109.45128 * 79.97546 * 12 11 10 40 40 H 1.09003 * 109.44473 * 199.88050 * 12 11 10 41 41 H 1.09001 * 109.55563 * 332.63239 * 13 12 11 42 42 H 1.08999 * 109.62390 * 212.40554 * 13 12 11 43 43 H 1.09002 * 109.47214 * 317.08130 * 15 14 13 44 44 H 1.08999 * 109.47442 * 77.07590 * 15 14 13 45 45 H 0.97000 * 119.99864 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00047 * 180.02562 * 22 21 19 47 47 H 1.09007 * 109.38656 * 303.32260 * 27 14 13 48 48 H 1.09001 * 109.38441 * 183.63994 * 27 14 13 49 49 H 1.09001 * 109.43721 * 29.79621 * 28 10 8 50 50 H 1.09004 * 109.43183 * 149.65855 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.8511 0.5631 -0.8374 6 8 3.9655 0.5867 1.2253 7 6 5.1688 -0.1753 1.1092 8 6 4.1481 2.5550 -0.1316 9 8 4.7596 3.0382 0.7977 10 7 4.0164 3.2438 -1.2826 11 6 3.3473 2.5936 -2.4265 12 6 2.4026 3.5694 -3.1480 13 6 1.6716 4.4155 -2.1305 14 7 2.4230 5.6497 -1.9082 15 6 1.5176 6.7819 -1.6716 16 6 2.2686 8.0743 -1.8631 17 8 3.4429 8.0541 -2.1664 18 7 1.6358 9.2526 -1.6963 19 6 2.3190 10.4283 -1.8711 20 1 3.3643 10.4103 -2.1419 21 6 1.6668 11.6430 -1.6987 22 7 0.3950 11.6649 -1.3686 23 14 2.5974 13.2450 -1.9375 24 1 2.4915 13.6724 -3.3557 25 1 2.0143 14.2916 -1.0602 26 1 4.0263 13.0444 -1.5863 27 6 3.4379 5.5980 -0.9243 28 6 4.5366 4.5944 -1.3498 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6887 1.8463 0.8899 33 1 1.6888 1.8463 -0.8900 34 1 5.4281 -0.5953 2.0810 35 1 5.0197 -0.9827 0.3922 36 1 5.9764 0.4711 0.7658 37 1 4.1028 2.2427 -3.1296 38 1 2.7721 1.7409 -2.0659 39 1 2.9822 4.2145 -3.8083 40 1 1.6786 3.0055 -3.7362 41 1 1.5868 3.8664 -1.1927 42 1 0.6760 4.6570 -2.5027 43 1 0.6871 6.7365 -2.3761 44 1 1.1328 6.7328 -0.6529 45 1 0.6969 9.2687 -1.4534 46 1 -0.0604 12.5129 -1.2486 47 1 3.0059 5.2806 0.0248 48 1 3.8783 6.5881 -0.8065 49 1 5.3918 4.6875 -0.6805 50 1 4.8506 4.8117 -2.3708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197093907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:56 Heat of formation + Delta-G solvation = -152.323132 kcal Electronic energy + Delta-G solvation = -31979.224364 eV Core-core repulsion = 27621.086394 eV Total energy + Delta-G solvation = -4358.137969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.94736 -40.51978 -39.30500 -38.76682 -37.95548 -36.46448 -35.76026 -33.72681 -33.26864 -32.36375 -30.35241 -28.23110 -27.68782 -27.26530 -26.84453 -25.76252 -24.75062 -23.13473 -21.70890 -21.08733 -20.23754 -19.85548 -18.89126 -18.18575 -17.76598 -17.54824 -17.28626 -16.94595 -16.65120 -16.53785 -16.32997 -16.12381 -15.91999 -15.81111 -15.54765 -15.36091 -15.07776 -14.65038 -14.57648 -14.29154 -14.08350 -13.71700 -13.48628 -13.36212 -13.05986 -12.99514 -12.77599 -12.71621 -12.55409 -12.44849 -12.39574 -12.34880 -12.15235 -12.13009 -11.85940 -11.82839 -11.53921 -11.43911 -10.68349 -10.46661 -10.27081 -9.99338 -9.75245 -9.09219 -8.45988 -5.94126 1.27136 1.37494 1.41147 1.53590 1.77112 2.07086 2.28404 2.63029 2.65346 2.75957 3.21093 3.36866 3.45552 3.71502 3.76161 3.85317 3.96615 4.04533 4.11929 4.17652 4.26647 4.29895 4.35363 4.40821 4.48063 4.49080 4.51157 4.54495 4.56222 4.59771 4.64702 4.72905 4.77963 4.81946 4.90018 4.90842 4.99235 5.09612 5.30338 5.41717 5.54701 5.89491 5.92358 6.06873 6.13786 6.21319 6.51688 6.61834 6.98627 7.14241 7.58277 8.13956 8.71458 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.002419 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.748175 B =11572.736656 C =12098.205611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.068 3.932 4 C 0.080 3.920 5 H 0.122 0.878 6 O -0.380 6.380 7 C 0.026 3.974 8 C 0.484 3.516 9 O -0.568 6.568 10 N -0.596 5.596 11 C 0.089 3.911 12 C -0.127 4.127 13 C 0.065 3.935 14 N -0.547 5.547 15 C 0.064 3.936 16 C 0.440 3.560 17 O -0.612 6.612 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.275 1.275 27 C 0.073 3.927 28 C 0.132 3.868 29 H 0.104 0.896 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.037 0.963 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.056 0.944 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.001 0.999 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 -26.775 -2.761 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C -0.009 4.009 4 C 0.018 3.982 5 H 0.140 0.860 6 O -0.297 6.297 7 C -0.070 4.070 8 C 0.271 3.729 9 O -0.447 6.447 10 N -0.330 5.330 11 C -0.032 4.032 12 C -0.165 4.165 13 C -0.061 4.061 14 N -0.272 5.272 15 C -0.066 4.066 16 C 0.228 3.772 17 O -0.498 6.498 18 N -0.214 5.214 19 C -0.459 4.459 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.057 4.057 28 C 0.008 3.992 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.055 0.945 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.074 0.926 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.019 0.981 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.899 -26.484 -2.664 26.633 hybrid contribution -0.268 1.502 0.945 1.794 sum -1.167 -24.982 -1.720 25.068 Atomic orbital electron populations 1.23014 0.78810 1.04350 1.01131 1.87859 1.21809 1.26271 1.95603 1.22641 0.89587 0.86335 1.02346 1.22086 0.94694 0.90829 0.90554 0.86032 1.87986 1.43248 1.67684 1.30779 1.23024 0.85244 0.94409 1.04299 1.21715 0.80457 0.88394 0.82291 1.90705 1.43064 1.70830 1.40096 1.48102 1.57548 1.14277 1.13105 1.22625 0.96946 0.96086 0.87517 1.21892 0.99160 0.97608 0.97862 1.21791 0.97163 0.88481 0.98680 1.57813 1.14818 1.04534 1.50046 1.21743 0.94906 0.88293 1.01673 1.20859 0.88164 0.85802 0.82417 1.90463 1.18169 1.87647 1.53478 1.41955 1.12871 1.04732 1.61813 1.19635 0.96099 0.84145 1.46020 0.90345 1.26007 0.96679 1.02193 0.96465 1.69669 1.10122 1.28632 1.47877 0.84959 0.77976 0.77065 0.78539 1.19487 1.19696 1.19941 1.21504 0.93325 1.00164 0.90694 1.21310 0.95196 0.79959 1.02770 0.87804 0.94083 0.91920 0.93595 0.88338 0.88196 0.91307 0.94790 0.88987 0.87610 0.91013 0.86212 0.94483 0.88766 0.86419 0.92567 0.77113 0.91379 0.98129 0.91297 0.91352 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -6.68 10.67 -144.67 -1.54 -8.22 16 3 C 0.07 1.18 5.09 71.98 0.37 1.55 16 4 C 0.08 1.63 1.94 29.85 0.06 1.68 16 5 H 0.12 1.71 7.09 -2.39 -0.02 1.69 16 6 O -0.38 -9.48 9.86 -125.76 -1.24 -10.72 16 7 C 0.03 0.47 10.81 113.37 1.23 1.69 16 8 C 0.48 12.86 6.95 87.65 0.61 13.47 16 9 O -0.57 -20.88 15.93 15.88 0.25 -20.62 16 10 N -0.60 -13.58 2.19 -817.90 -1.79 -15.36 16 11 C 0.09 1.18 5.33 86.43 0.46 1.64 16 12 C -0.13 -1.79 5.77 30.27 0.17 -1.61 16 13 C 0.07 1.28 5.32 85.84 0.46 1.74 16 14 N -0.55 -16.58 3.60 -916.42 -3.30 -19.88 16 15 C 0.06 2.17 5.44 85.56 0.47 2.63 16 16 C 0.44 20.67 7.37 87.66 0.65 21.32 16 17 O -0.61 -33.09 13.97 -3.10 -0.04 -33.13 16 18 N -0.58 -29.49 5.29 -306.98 -1.62 -31.11 16 19 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -49.97 13.05 21.66 0.28 -49.68 16 23 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C 0.07 2.54 5.01 87.90 0.44 2.98 16 28 C 0.13 3.88 5.54 87.28 0.48 4.36 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.24 4.37 -2.39 -0.01 1.23 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 36 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.96 4.00 -2.39 -0.01 0.95 16 39 H 0.07 1.35 7.98 -2.39 -0.02 1.33 16 40 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.04 0.73 6.04 -2.39 -0.01 0.71 16 42 H 0.09 1.50 7.36 -2.39 -0.02 1.49 16 43 H 0.12 3.28 7.57 -2.39 -0.02 3.26 16 44 H 0.06 1.80 8.11 -2.39 -0.02 1.78 16 45 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 46 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 47 H 0.00 0.03 8.12 -2.38 -0.02 0.01 16 48 H 0.07 2.99 5.61 -2.39 -0.01 2.98 16 49 H 0.07 2.26 7.23 -2.39 -0.02 2.25 16 50 H 0.09 2.64 8.11 -2.38 -0.02 2.62 16 Total: -1.00 -78.37 394.37 1.17 -77.20 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.23 Total: 31.47 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 7.92 Total: 34.75 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -6.43 Total: -116.03 kcal Atomic # 8 Polarization: -70.12 SS G_CDS: -2.57 Total: -72.70 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -78.37 1.17 -77.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197093907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.127 kcal (2) G-P(sol) polarization free energy of solvation -78.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds