Wall clock time and date at job start Wed Apr 1 2020 02:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99738 * 2 1 4 4 C 1.52994 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47526 * 55.00070 * 4 3 2 6 6 C 1.53007 * 109.47095 * 295.00334 * 4 3 2 7 7 C 1.53001 * 109.47225 * 175.00526 * 4 3 2 8 8 C 1.50709 * 109.47058 * 184.99813 * 7 4 3 9 9 O 1.21285 * 119.99795 * 359.97438 * 8 7 4 10 10 N 1.34777 * 119.99685 * 179.97438 * 8 7 4 11 11 C 1.46498 * 119.99428 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.28061 * 35.63965 * 11 10 8 13 13 C 1.53996 * 110.30794 * 273.54794 * 11 10 8 14 14 N 1.47906 * 107.06117 * 242.31048 * 13 11 10 15 15 C 1.46900 * 111.00463 * 214.15679 * 14 13 11 16 16 C 1.50696 * 109.47238 * 169.99874 * 15 14 13 17 17 O 1.21291 * 120.00196 * 0.02562 * 16 15 14 18 18 N 1.34771 * 119.99951 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00186 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99512 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00094 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00183 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99845 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47361 * 59.99523 * 23 21 19 25 25 H 1.48498 * 109.47027 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47099 * 299.99374 * 23 21 19 27 27 C 1.48534 * 105.81681 * 334.67510 * 14 13 11 28 28 C 1.54591 * 110.30733 * 157.83730 * 11 10 8 29 29 H 1.09002 * 110.72589 * 22.51242 * 28 11 10 30 30 O 1.42904 * 110.72428 * 259.40899 * 28 11 10 31 31 H 1.09006 * 109.47139 * 59.99762 * 1 2 3 32 32 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47462 * 299.99893 * 1 2 3 34 34 H 1.09002 * 109.46970 * 60.00180 * 3 2 1 35 35 H 1.09000 * 109.47579 * 300.00052 * 3 2 1 36 36 H 1.09000 * 109.46598 * 299.99721 * 6 4 3 37 37 H 1.08992 * 109.46883 * 59.99870 * 6 4 3 38 38 H 1.09004 * 109.46993 * 180.02562 * 6 4 3 39 39 H 1.08998 * 109.47361 * 64.99781 * 7 4 3 40 40 H 1.09001 * 109.46986 * 304.99170 * 7 4 3 41 41 H 0.96998 * 119.99900 * 0.02562 * 10 8 7 42 42 H 1.09003 * 109.91856 * 122.96222 * 13 11 10 43 43 H 1.08997 * 110.08243 * 1.75635 * 13 11 10 44 44 H 1.08996 * 109.46735 * 290.00125 * 15 14 13 45 45 H 1.09001 * 109.46927 * 50.00010 * 15 14 13 46 46 H 0.96993 * 120.00165 * 0.02562 * 18 16 15 47 47 H 0.97006 * 120.00198 * 179.97438 * 22 21 19 48 48 H 1.09004 * 110.66939 * 157.64184 * 27 14 13 49 49 H 1.09002 * 110.66619 * 280.76580 * 27 14 13 50 50 H 0.96700 * 114.00467 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.8507 0.5687 -0.8427 6 6 3.9962 0.5365 1.3064 7 6 4.1571 2.5771 -0.1262 8 6 5.6537 2.4496 -0.2503 9 8 6.1718 1.3531 -0.2389 10 7 6.4161 3.5541 -0.3740 11 6 7.8707 3.4301 -0.4952 12 1 8.1275 2.5408 -1.0708 13 6 8.5201 3.3696 0.8999 14 7 9.4029 4.5503 1.0191 15 6 10.5949 4.2379 1.8189 16 6 11.5806 5.3731 1.7160 17 8 11.3160 6.3469 1.0431 18 7 12.7557 5.3068 2.3726 19 6 13.6522 6.3398 2.2795 20 1 13.4170 7.2065 1.6796 21 6 14.8640 6.2711 2.9560 22 7 15.1504 5.2164 3.6854 23 14 16.0852 7.6790 2.8296 24 1 15.4591 8.9248 3.3404 25 1 17.2899 7.3633 3.6384 26 1 16.4773 7.8682 1.4098 27 6 9.7759 4.9189 -0.3706 28 6 8.4632 4.6928 -1.1618 29 1 7.7908 5.5426 -1.0443 30 8 8.7364 4.4540 -2.5440 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.6885 1.8464 0.8900 35 1 1.6885 1.8465 -0.8900 36 1 3.6808 1.1526 2.1484 37 1 3.5532 -0.4554 1.3959 38 1 5.0828 0.4509 1.3061 39 1 3.9147 3.1645 0.7593 40 1 3.7602 3.0737 -1.0116 41 1 6.0016 4.4310 -0.3827 42 1 9.1067 2.4561 0.9971 43 1 7.7515 3.4012 1.6721 44 1 10.3071 4.0998 2.8611 45 1 11.0540 3.3229 1.4445 46 1 12.9671 4.5282 2.9110 47 1 15.9965 5.1683 4.1574 48 1 10.0813 5.9640 -0.4226 49 1 10.5664 4.2671 -0.7425 50 1 9.1093 5.2157 -3.0086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197359693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:18 Heat of formation + Delta-G solvation = -189.646942 kcal Electronic energy + Delta-G solvation = -30139.523939 eV Core-core repulsion = 25779.767488 eV Total energy + Delta-G solvation = -4359.756451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44793 -40.53814 -39.45707 -38.85258 -36.93269 -36.05593 -35.67319 -35.24282 -33.33055 -31.63992 -29.63751 -28.76061 -28.16609 -27.71156 -26.34153 -25.84259 -22.94594 -22.38753 -21.52541 -21.12934 -20.84663 -19.88303 -18.71085 -18.28877 -17.81196 -17.35143 -17.14451 -16.92405 -16.68805 -16.38281 -16.24808 -16.08615 -15.87531 -15.61032 -15.41920 -15.02486 -14.77483 -14.41034 -14.34137 -14.06154 -13.83087 -13.76301 -13.52310 -13.45926 -13.10423 -13.01111 -12.98921 -12.82412 -12.60087 -12.43537 -12.41718 -12.13545 -12.06963 -11.82609 -11.77105 -11.63895 -11.46915 -11.16714 -10.71625 -10.55402 -10.29714 -10.09164 -10.02042 -9.46465 -8.47175 -5.96323 1.39606 1.42123 1.52976 1.67055 2.00943 2.05705 2.27311 2.63759 2.92858 3.10517 3.19378 3.29593 3.57745 3.68682 3.84328 3.93364 3.99130 4.11131 4.19877 4.24755 4.27578 4.33643 4.42156 4.48561 4.50963 4.51724 4.53374 4.62017 4.63888 4.69430 4.76304 4.79329 4.82766 4.89299 4.97216 5.09607 5.14738 5.34547 5.40116 5.41617 5.53931 5.70742 5.79966 6.02358 6.30598 6.57210 6.57955 6.75795 7.10818 7.29815 7.53056 8.07425 8.69886 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.001743 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.075149 B =16064.886905 C =16732.378080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.066 3.934 4 C -0.074 4.074 5 H 0.060 0.940 6 C -0.145 4.145 7 C -0.126 4.126 8 C 0.511 3.489 9 O -0.576 6.576 10 N -0.707 5.707 11 C 0.150 3.850 12 H 0.081 0.919 13 C 0.032 3.968 14 N -0.496 5.496 15 C 0.045 3.955 16 C 0.441 3.559 17 O -0.610 6.610 18 N -0.571 5.571 19 C -0.334 4.334 20 H 0.083 0.917 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.271 1.271 27 C 0.012 3.988 28 C 0.107 3.893 29 H 0.099 0.901 30 O -0.572 6.572 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.418 0.582 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.098 0.902 49 H 0.030 0.970 50 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.043 -4.938 -7.328 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.010 4.010 4 C -0.093 4.093 5 H 0.079 0.921 6 C -0.203 4.203 7 C -0.165 4.165 8 C 0.300 3.700 9 O -0.456 6.456 10 N -0.360 5.360 11 C 0.044 3.956 12 H 0.099 0.901 13 C -0.097 4.097 14 N -0.222 5.222 15 C -0.087 4.087 16 C 0.228 3.772 17 O -0.496 6.496 18 N -0.208 5.208 19 C -0.463 4.463 20 H 0.101 0.899 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.117 4.117 28 C 0.047 3.953 29 H 0.117 0.883 30 O -0.380 6.380 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.256 0.744 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.116 0.884 49 H 0.048 0.952 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -27.071 -5.443 -7.238 28.546 hybrid contribution 1.600 0.371 -0.056 1.644 sum -25.470 -5.073 -7.294 26.975 Atomic orbital electron populations 1.22897 0.79602 1.03544 1.00949 1.87856 1.21314 1.29152 1.95626 1.22640 0.92271 0.84408 1.01679 1.20780 0.93464 0.95741 0.99329 0.92141 1.21824 1.01381 1.00560 0.96510 1.21660 0.88951 0.98719 1.07175 1.21254 0.90764 0.83503 0.74503 1.90698 1.75972 1.27894 1.51003 1.45912 1.05527 1.10227 1.74347 1.21395 0.81116 0.98537 0.94577 0.90072 1.23357 0.97034 0.91824 0.97495 1.64583 1.14343 1.31672 1.11573 1.22037 0.90336 0.95095 1.01210 1.20527 0.83427 0.89753 0.83449 1.90406 1.78040 1.36116 1.45082 1.41918 1.15141 1.19763 1.43963 1.19663 0.97479 0.99507 1.29672 0.89855 1.26065 0.99340 1.00464 0.95404 1.69674 1.25512 1.29846 1.31113 0.84967 0.77074 0.77685 0.78490 1.19563 1.19727 1.19623 1.23983 0.96463 1.03310 0.87945 1.22846 0.94813 0.96486 0.81132 0.88325 1.86438 1.86271 1.44091 1.21187 0.93018 0.89198 0.93028 0.91553 0.91554 0.91998 0.93432 0.93063 0.85720 0.85750 0.74449 0.93229 0.88672 0.87065 0.91798 0.77129 0.91315 0.88372 0.95150 0.74878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.10 10.24 -148.98 -1.53 -8.63 16 3 C 0.07 0.80 5.32 71.98 0.38 1.18 16 4 C -0.07 -1.18 2.27 -10.79 -0.02 -1.20 16 5 H 0.06 1.28 7.95 -2.39 -0.02 1.27 16 6 C -0.15 -2.80 8.83 71.98 0.64 -2.17 16 7 C -0.13 -1.38 5.18 29.85 0.15 -1.23 16 8 C 0.51 10.05 7.54 87.66 0.66 10.71 16 9 O -0.58 -16.76 13.66 -3.05 -0.04 -16.80 16 10 N -0.71 -12.38 5.03 -438.37 -2.21 -14.58 16 11 C 0.15 3.62 3.06 45.87 0.14 3.76 16 12 H 0.08 2.38 7.58 -2.39 -0.02 2.37 16 13 C 0.03 0.84 6.48 86.45 0.56 1.40 16 14 N -0.50 -15.79 5.26 -887.57 -4.67 -20.46 16 15 C 0.04 1.58 5.52 85.56 0.47 2.05 16 16 C 0.44 20.55 7.49 87.66 0.66 21.20 16 17 O -0.61 -31.66 13.10 -3.06 -0.04 -31.70 16 18 N -0.57 -29.05 5.29 -307.00 -1.62 -30.67 16 19 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 20 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 23 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 C 0.01 0.37 5.03 86.65 0.44 0.80 16 28 C 0.11 2.52 4.14 31.80 0.13 2.65 16 29 H 0.10 1.87 7.74 -2.39 -0.02 1.85 16 30 O -0.57 -13.04 13.41 -148.98 -2.00 -15.04 16 31 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16 38 H 0.05 1.25 5.95 -2.38 -0.01 1.24 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.42 4.60 8.35 -92.71 -0.77 3.83 16 42 H 0.05 1.37 7.57 -2.39 -0.02 1.35 16 43 H 0.10 2.33 7.93 -2.39 -0.02 2.31 16 44 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 45 H 0.06 2.12 7.81 -2.39 -0.02 2.10 16 46 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 47 H 0.28 14.06 8.31 -92.70 -0.77 13.28 16 48 H 0.10 3.69 5.97 -2.38 -0.01 3.68 16 49 H 0.03 1.06 8.02 -2.39 -0.02 1.05 16 50 H 0.40 6.03 9.12 -74.06 -0.68 5.36 16 Total: -1.00 -74.96 405.40 -4.26 -79.22 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -1.20 Total: 40.96 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 6.74 Total: 22.64 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -8.21 Total: -115.03 kcal Atomic # 8 Polarization: -68.57 SS G_CDS: -3.60 Total: -72.17 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -74.96 -4.26 -79.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197359693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.426 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds